Wall clock time and date at job start Tue Mar 31 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35836 * 117.00356 * 2 1 4 4 C 1.38854 * 119.93780 * 179.97438 * 3 2 1 5 5 C 1.37880 * 120.06450 * 179.74749 * 4 3 2 6 6 C 1.39392 * 119.93245 * 0.25129 * 5 4 3 7 7 C 1.48350 * 120.06231 * 179.97438 * 6 5 4 8 8 N 1.30860 * 126.34090 * 359.69422 * 7 6 5 9 9 O 1.21265 * 110.32939 * 179.79942 * 8 7 6 10 10 C 1.34073 * 109.97374 * 0.46914 * 9 8 7 11 11 N 1.37531 * 126.55511 * 179.73033 * 10 9 8 12 12 C 1.46509 * 119.99884 * 354.29995 * 11 10 9 13 13 C 1.50692 * 109.47070 * 89.99918 * 12 11 10 14 14 H 1.08002 * 120.00257 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99866 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99980 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00039 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47454 * 59.99875 * 17 15 13 19 19 H 1.48506 * 109.47282 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47488 * 299.99520 * 17 15 13 21 21 C 1.39837 * 120.00436 * 174.29439 * 11 10 9 22 22 C 1.38897 * 120.07343 * 111.93421 * 21 11 10 23 23 C 1.38107 * 119.93189 * 179.81365 * 22 21 11 24 24 C 1.38286 * 120.06757 * 0.44498 * 23 22 21 25 25 C 1.38292 * 120.14997 * 359.78832 * 24 23 22 26 26 C 1.38110 * 120.06969 * 359.97438 * 25 24 23 27 27 N 1.31985 * 106.89593 * 359.71043 * 10 9 8 28 28 C 1.39394 * 119.87551 * 0.02562 * 6 5 4 29 29 C 1.37876 * 119.93690 * 359.97438 * 28 6 5 30 30 H 1.08997 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47064 * 300.00279 * 1 2 3 32 32 H 1.08998 * 109.46867 * 59.99639 * 1 2 3 33 33 H 1.07995 * 119.97292 * 0.02792 * 4 3 2 34 34 H 1.07994 * 120.03140 * 180.23560 * 5 4 3 35 35 H 1.08999 * 109.47167 * 210.00132 * 12 11 10 36 36 H 1.09004 * 109.46668 * 329.99629 * 12 11 10 37 37 H 0.96998 * 119.99712 * 180.02562 * 16 15 13 38 38 H 1.08007 * 120.03575 * 0.02687 * 22 21 11 39 39 H 1.07995 * 119.97044 * 180.23211 * 23 22 21 40 40 H 1.08000 * 119.92679 * 179.76112 * 24 23 22 41 41 H 1.07995 * 119.96671 * 179.97438 * 25 24 23 42 42 H 1.07993 * 120.03548 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.03019 * 179.97438 * 28 6 5 44 44 H 1.07999 * 119.96607 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 3.4325 1.2813 0.0005 5 6 4.0612 2.5084 -0.0047 6 6 3.3033 3.6783 -0.0053 7 6 3.9769 5.0001 -0.0104 8 7 5.2681 5.2125 -0.0090 9 8 5.4993 6.4029 -0.0182 10 6 4.3496 7.0927 -0.0164 11 7 4.2156 8.4614 -0.0196 12 6 5.4012 9.3138 0.1004 13 6 5.9436 9.6160 -1.2726 14 1 5.4545 9.2132 -2.1472 15 6 7.0650 10.4060 -1.4124 16 7 7.6609 10.8962 -0.3473 17 14 7.7378 10.7801 -3.1143 18 1 6.7018 11.4834 -3.9127 19 1 8.9395 11.6441 -2.9927 20 1 8.1069 9.5106 -3.7908 21 6 2.9479 9.0397 -0.1374 22 6 2.3946 9.7284 0.9344 23 6 1.1440 10.3017 0.8135 24 6 0.4388 10.1827 -0.3700 25 6 0.9846 9.4935 -1.4375 26 6 2.2369 8.9221 -1.3248 27 7 3.3709 6.2072 -0.0113 28 6 1.9114 3.6039 0.0000 29 6 1.2881 2.3740 0.0053 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.0192 0.3747 0.0005 34 1 5.1398 2.5631 -0.0081 35 1 5.1302 10.2454 0.5972 36 1 6.1619 8.7977 0.6862 37 1 8.4496 11.4522 -0.4457 38 1 2.9434 9.8186 1.8603 39 1 0.7148 10.8406 1.6452 40 1 -0.5407 10.6286 -0.4608 41 1 0.4310 9.4020 -2.3603 42 1 2.6624 8.3836 -2.1586 43 1 1.3217 4.5087 0.0000 44 1 0.2097 2.3158 0.0090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009831713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:11 Heat of formation + Delta-G solvation = 86.268268 kcal Electronic energy + Delta-G solvation = -29544.046423 eV Core-core repulsion = 25429.960290 eV Total energy + Delta-G solvation = -4114.086134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.15430 -41.14001 -40.62934 -38.69200 -37.85768 -36.33149 -34.90238 -32.91533 -32.25634 -31.83410 -31.26315 -30.62403 -28.79561 -28.26074 -25.56329 -25.30651 -24.30492 -23.51647 -23.36126 -22.74930 -21.49800 -19.49429 -19.14386 -19.07981 -18.55860 -18.23196 -17.27145 -16.97259 -16.81575 -16.67901 -16.67037 -16.07180 -15.84357 -15.45370 -15.05733 -14.72379 -14.60172 -14.43043 -14.30653 -14.04915 -13.70505 -13.58604 -13.46088 -13.35644 -13.16628 -12.90538 -12.79815 -12.71796 -12.62429 -12.44739 -12.16220 -12.04174 -11.99843 -11.81533 -11.72562 -11.44571 -10.71276 -10.13274 -9.96067 -9.83445 -9.26498 -8.98010 -8.28547 -6.46215 -0.26182 0.25273 0.27374 0.50742 0.69396 1.08593 1.36955 1.38828 1.47045 1.57659 2.27358 2.31490 2.42838 2.74042 2.83921 2.96551 3.00898 3.39564 3.77198 3.85685 4.03516 4.09052 4.17314 4.28829 4.30937 4.40583 4.44025 4.48051 4.54245 4.57801 4.63569 4.72484 4.78160 4.84449 4.90930 4.96145 4.99271 5.12673 5.14059 5.26979 5.45128 5.45510 5.50531 5.56629 5.60189 5.61371 5.83516 5.87063 5.97799 6.32789 6.34001 6.60404 7.23061 7.37301 8.76106 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.002909 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.816589 B = 9622.190873 C =11428.097864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.146 3.854 4 C -0.156 4.156 5 C -0.048 4.048 6 C -0.079 4.079 7 C 0.242 3.758 8 N -0.423 5.423 9 O 0.017 5.983 10 C 0.443 3.557 11 N -0.502 5.502 12 C 0.269 3.731 13 C -0.554 4.554 14 H 0.051 0.949 15 C 0.023 3.977 16 N -0.918 5.918 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.276 1.276 21 C 0.143 3.857 22 C -0.133 4.133 23 C -0.104 4.104 24 C -0.114 4.114 25 C -0.108 4.108 26 C -0.123 4.123 27 N -0.543 5.543 28 C -0.035 4.035 29 C -0.204 4.204 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.134 0.866 35 H 0.043 0.957 36 H 0.020 0.980 37 H 0.272 0.728 38 H 0.120 0.880 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.464 -13.352 1.308 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.099 3.901 4 C -0.174 4.174 5 C -0.068 4.068 6 C -0.081 4.081 7 C -0.029 4.029 8 N -0.150 5.150 9 O -0.024 6.024 10 C 0.136 3.864 11 N -0.223 5.223 12 C 0.150 3.850 13 C -0.593 4.593 14 H 0.070 0.930 15 C -0.178 4.178 16 N -0.556 5.556 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.201 1.201 21 C 0.054 3.946 22 C -0.153 4.153 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.126 4.126 26 C -0.143 4.143 27 N -0.291 5.291 28 C -0.055 4.055 29 C -0.222 4.222 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.173 0.827 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.118 0.882 43 H 0.154 0.846 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.926 -13.948 1.399 23.553 hybrid contribution 1.281 0.825 -0.758 1.702 sum -17.645 -13.123 0.641 22.000 Atomic orbital electron populations 1.23450 0.76002 1.05956 1.02668 1.86062 1.23849 1.26080 1.87841 1.19295 0.92379 0.84864 0.93570 1.20483 0.91985 0.98187 1.06769 1.21022 1.00357 0.90402 0.95016 1.17454 0.93687 0.86211 1.10732 1.23979 0.86568 0.94452 0.97947 1.74748 1.17940 0.93203 1.29083 1.85374 1.33069 1.12734 1.71237 1.24330 0.81368 0.88901 0.91757 1.43388 1.08408 0.96695 1.73789 1.19254 0.79893 0.88791 0.97072 1.21536 1.12610 1.32471 0.92654 0.93044 1.25683 0.96175 0.94868 1.01064 1.69992 1.21018 1.34027 1.30562 0.85546 0.78160 0.78282 0.79387 1.19069 1.19892 1.20117 1.17690 0.83480 0.98425 0.95038 1.21385 0.97015 0.99758 0.97122 1.21345 0.92806 0.98627 0.99464 1.21577 1.01147 0.98183 0.92301 1.21302 0.93656 0.97059 1.00569 1.21281 0.96619 1.00876 0.95561 1.72379 1.26183 0.97240 1.33278 1.21058 0.92093 0.98784 0.93561 1.21403 1.01733 0.90555 1.08503 0.85968 0.91324 0.91387 0.82654 0.84838 0.93895 0.96217 0.91931 0.86175 0.82422 0.81918 0.83159 0.88232 0.84604 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.65 10.49 -91.71 -0.96 -6.62 16 3 C 0.15 3.01 6.69 22.57 0.15 3.16 16 4 C -0.16 -3.48 9.97 22.33 0.22 -3.26 16 5 C -0.05 -1.32 9.68 22.46 0.22 -1.11 16 6 C -0.08 -2.51 5.88 -20.03 -0.12 -2.63 16 7 C 0.24 9.71 7.79 137.30 1.07 10.78 16 8 N -0.42 -18.75 11.83 -57.81 -0.68 -19.43 16 9 O 0.02 0.82 10.85 70.89 0.77 1.59 16 10 C 0.44 20.49 8.32 179.19 1.49 21.98 16 11 N -0.50 -23.02 2.57 -635.19 -1.63 -24.65 16 12 C 0.27 13.95 5.26 85.63 0.45 14.40 16 13 C -0.55 -30.91 9.39 25.60 0.24 -30.67 16 14 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 15 C 0.02 1.28 5.46 84.66 0.46 1.74 16 16 N -0.92 -52.60 13.29 21.45 0.28 -52.32 16 17 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.14 5.66 4.98 38.18 0.19 5.85 16 22 C -0.13 -4.43 9.69 22.40 0.22 -4.22 16 23 C -0.10 -2.57 10.04 22.25 0.22 -2.35 16 24 C -0.11 -2.52 10.04 22.29 0.22 -2.29 16 25 C -0.11 -2.83 10.04 22.25 0.22 -2.61 16 26 C -0.12 -4.41 9.79 22.40 0.22 -4.19 16 27 N -0.54 -22.92 10.88 -311.33 -3.39 -26.31 16 28 C -0.03 -0.92 9.69 22.46 0.22 -0.70 16 29 C -0.20 -4.05 9.02 22.33 0.20 -3.84 16 30 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.48 7.64 -2.38 -0.02 0.46 16 32 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 33 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.13 3.73 7.86 -2.91 -0.02 3.70 16 35 H 0.04 2.27 7.86 -2.39 -0.02 2.25 16 36 H 0.02 1.11 7.80 -2.38 -0.02 1.09 16 37 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 39 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 42 H 0.10 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.14 3.60 7.87 -2.91 -0.02 3.58 16 44 H 0.17 2.14 6.28 -2.91 -0.02 2.12 16 Total: -1.00 -69.78 387.91 4.46 -65.32 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.03 Total: 15.39 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 7.01 Total: 1.28 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -5.42 Total: -122.71 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.19 Total: -5.03 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -69.78 4.46 -65.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009831713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.592 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds