Wall clock time and date at job start Tue Mar 31 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86796 * 120.00414 * 2 1 4 4 H 1.48504 * 109.46737 * 269.99542 * 3 2 1 5 5 H 1.48496 * 109.47132 * 29.99713 * 3 2 1 6 6 H 1.48503 * 109.47170 * 149.99710 * 3 2 1 7 7 C 1.39915 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99607 * 175.56131 * 7 2 1 9 9 C 1.41153 * 119.99702 * 355.56132 * 7 2 1 10 10 C 1.40865 * 120.16115 * 214.77641 * 9 7 2 11 11 C 1.36373 * 119.82879 * 180.02562 * 10 9 7 12 12 C 1.39474 * 120.17053 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83838 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99816 * 35.29010 * 13 12 11 15 15 O 1.21285 * 119.99854 * 355.71093 * 14 13 12 16 16 C 1.50699 * 120.00036 * 175.70870 * 14 13 12 17 17 N 1.46498 * 109.47016 * 179.97438 * 16 14 13 18 18 C 1.39992 * 120.00117 * 179.97438 * 17 16 14 19 19 C 1.38823 * 120.03998 * 0.02562 * 18 17 16 20 20 C 1.38186 * 120.00783 * 180.02562 * 19 18 17 21 21 C 1.38413 * 120.10440 * 359.97192 * 20 19 18 22 22 F 1.35107 * 119.95235 * 180.02562 * 21 20 19 23 23 C 1.38649 * 120.09272 * 0.02562 * 21 20 19 24 24 F 1.35100 * 120.01033 * 179.97438 * 23 21 20 25 25 C 1.38464 * 119.98603 * 359.76846 * 23 21 20 26 26 F 1.35095 * 120.05577 * 180.27408 * 25 23 21 27 27 C 1.39490 * 120.33112 * 0.25705 * 12 11 10 28 28 C 1.36373 * 120.16574 * 359.48123 * 27 12 11 29 29 H 0.96997 * 119.99490 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.08922 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.91520 * 179.97438 * 11 10 9 32 32 H 0.97004 * 120.00377 * 215.29107 * 13 12 11 33 33 H 1.09001 * 109.47067 * 60.00401 * 16 14 13 34 34 H 1.09001 * 109.47133 * 300.00192 * 16 14 13 35 35 H 0.96997 * 120.00216 * 0.02562 * 17 16 14 36 36 H 1.07994 * 119.99617 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.94942 * 180.02562 * 20 19 18 38 38 H 1.07995 * 119.91220 * 179.74509 * 27 12 11 39 39 H 1.08003 * 120.08675 * 180.25943 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4904 2.0462 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4400 0.7001 7 6 2.0082 -1.2118 0.0005 8 1 3.0858 -1.2132 -0.0718 9 6 1.3055 -2.4322 0.0957 10 6 1.8647 -3.5180 0.7975 11 6 1.1801 -4.6942 0.8847 12 6 -0.0705 -4.8239 0.2809 13 7 -0.7632 -6.0281 0.3738 14 6 -0.6815 -6.7675 1.4977 15 8 0.0557 -6.4239 2.3974 16 6 -1.5062 -8.0211 1.6365 17 7 -1.2399 -8.6392 2.9378 18 6 -1.8946 -9.8231 3.2975 19 6 -2.7961 -10.4125 2.4216 20 6 -3.4424 -11.5808 2.7776 21 6 -3.1923 -12.1658 4.0068 22 9 -3.8256 -13.3084 4.3515 23 6 -2.2927 -11.5808 4.8849 24 9 -2.0502 -12.1530 6.0845 25 6 -1.6398 -10.4124 4.5303 26 9 -0.7589 -9.8443 5.3825 27 6 -0.6281 -3.7550 -0.4208 28 6 0.0423 -2.5709 -0.5121 29 1 -0.4849 0.8401 -0.0004 30 1 2.8331 -3.4194 1.2653 31 1 1.6077 -5.5278 1.4221 32 1 -1.3046 -6.3350 -0.3703 33 1 -1.2423 -8.7194 0.8423 34 1 -2.5643 -7.7700 1.5629 35 1 -0.6104 -8.2278 3.5504 36 1 -2.9923 -9.9578 1.4619 37 1 -4.1433 -12.0387 2.0952 38 1 -1.5950 -3.8642 -0.8893 39 1 -0.3926 -1.7428 -1.0521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011041545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:06 Heat of formation + Delta-G solvation = -112.627188 kcal Electronic energy + Delta-G solvation = -28426.002733 eV Core-core repulsion = 23691.027921 eV Total energy + Delta-G solvation = -4734.974812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.098 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.92300 -49.25840 -48.60263 -40.22042 -39.33391 -37.49377 -35.53169 -34.59442 -33.08515 -31.00198 -30.28813 -29.68625 -28.94411 -27.05297 -24.85776 -23.66370 -22.68963 -21.69242 -20.92293 -19.98608 -18.93045 -18.46992 -17.86964 -17.47839 -17.23222 -16.99244 -16.63351 -16.15180 -15.81263 -15.67575 -15.54511 -15.30233 -15.09813 -15.05847 -14.67374 -14.55983 -14.08406 -13.77527 -13.62525 -13.26885 -13.05851 -12.73583 -12.34226 -12.29599 -12.20782 -12.05880 -11.80394 -11.47919 -11.23974 -11.10173 -10.82114 -10.46786 -10.18618 -9.64572 -9.59308 -9.30368 -9.29348 -9.03667 -7.92908 -7.66364 -7.00245 -6.71225 -4.44144 0.40035 0.61932 2.32753 2.55789 2.84960 2.88047 2.98981 3.04754 3.08031 3.18219 3.24325 3.52950 3.90442 3.91218 3.97535 4.14419 4.33384 4.58845 4.64150 4.80727 4.87829 4.96659 5.24499 5.34872 5.45641 5.54586 5.58218 6.06907 6.14510 6.30997 6.55637 6.58633 6.77963 6.95674 7.06993 7.17955 7.20217 7.52649 7.58962 7.70630 7.95281 8.08609 8.20491 8.43117 8.56047 8.83154 8.88259 10.19729 Molecular weight = 350.10amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.001707 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.655519 B =16400.277195 C =16938.297033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.207 4.207 11 C -0.083 4.083 12 C -0.005 4.005 13 N -0.641 5.641 14 C 0.491 3.509 15 O -0.525 6.525 16 C 0.103 3.897 17 N -0.717 5.717 18 C 0.218 3.782 19 C -0.162 4.162 20 C -0.078 4.078 21 C 0.026 3.974 22 F -0.129 7.129 23 C 0.086 3.914 24 F -0.117 7.117 25 C 0.012 3.988 26 F -0.121 7.121 27 C -0.117 4.117 28 C -0.142 4.142 29 H 0.279 0.721 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.398 0.602 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.421 0.579 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.092 0.908 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 -19.109 0.685 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.227 4.227 11 C -0.102 4.102 12 C -0.097 4.097 13 N -0.284 5.284 14 C 0.277 3.723 15 O -0.402 6.402 16 C -0.025 4.025 17 N -0.348 5.348 18 C 0.110 3.890 19 C -0.185 4.185 20 C -0.097 4.097 21 C 0.004 3.996 22 F -0.107 7.107 23 C 0.064 3.936 24 F -0.096 7.096 25 C -0.013 4.013 26 F -0.100 7.100 27 C -0.137 4.137 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.232 0.768 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.261 0.739 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.110 0.890 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.614 -18.606 1.244 20.541 hybrid contribution 0.297 0.610 0.461 0.820 sum -8.317 -17.995 1.704 19.897 Atomic orbital electron populations 1.69751 1.07323 1.28873 1.37692 1.25907 0.94976 1.01288 0.92467 0.86172 0.80264 0.80327 0.79111 1.19451 1.20242 1.18667 1.19530 0.94823 0.90205 1.44370 0.90499 1.17751 0.92264 0.92011 0.88043 1.20813 1.01316 0.94947 1.05592 1.20377 0.92722 0.97841 0.99298 1.17217 0.94384 0.85687 1.12451 1.42833 1.48538 1.21308 1.15726 1.20280 0.83851 0.85293 0.82919 1.90721 1.39005 1.70433 1.40021 1.21176 1.00572 0.94155 0.86592 1.44455 1.47652 1.23574 1.19166 1.17593 0.92860 0.87488 0.91072 1.20491 0.99607 0.97478 1.00917 1.20874 0.99593 0.95122 0.94130 1.17077 0.99457 0.87634 0.95470 1.91526 1.80237 1.46570 1.92408 1.17298 0.99571 0.93480 0.83212 1.91552 1.93069 1.83479 1.41477 1.16660 0.98727 0.95632 0.90325 1.91534 1.65818 1.83770 1.68862 1.20304 0.98333 0.93076 1.01971 1.21205 0.97313 0.95592 1.02132 0.91025 0.88513 0.87534 0.76775 0.88693 0.88564 0.73921 0.83199 0.82943 0.88966 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.42 10.60 55.55 0.59 -19.83 16 2 C 0.07 1.70 5.42 -17.33 -0.09 1.60 16 3 Si 0.92 18.51 29.56 -169.99 -5.03 13.48 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.88 9.02 -37.85 -0.34 -12.22 16 8 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 9 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 10 C -0.21 -5.03 9.74 -39.26 -0.38 -5.42 16 11 C -0.08 -1.86 8.61 -39.79 -0.34 -2.21 16 12 C -0.01 -0.11 6.31 -83.57 -0.53 -0.64 16 13 N -0.64 -9.44 5.30 -9.74 -0.05 -9.49 16 14 C 0.49 7.03 7.73 -10.99 -0.08 6.95 16 15 O -0.53 -9.94 13.09 5.55 0.07 -9.87 16 16 C 0.10 0.90 5.40 -5.20 -0.03 0.87 16 17 N -0.72 -7.50 5.71 -59.72 -0.34 -7.84 16 18 C 0.22 2.04 6.66 -83.63 -0.56 1.48 16 19 C -0.16 -1.05 9.31 -39.38 -0.37 -1.42 16 20 C -0.08 -0.49 10.02 -39.54 -0.40 -0.89 16 21 C 0.03 0.24 7.30 -39.37 -0.29 -0.05 16 22 F -0.13 -1.29 17.18 2.25 0.04 -1.25 16 23 C 0.09 0.93 7.31 -39.35 -0.29 0.64 16 24 F -0.12 -1.43 17.09 2.25 0.04 -1.39 16 25 C 0.01 0.13 7.31 -39.22 -0.29 -0.16 16 26 F -0.12 -1.56 16.55 2.25 0.04 -1.52 16 27 C -0.12 -2.47 9.90 -39.79 -0.39 -2.87 16 28 C -0.14 -3.49 8.62 -39.26 -0.34 -3.83 16 29 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 30 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 31 H 0.11 2.36 6.22 -52.48 -0.33 2.04 16 32 H 0.40 4.14 8.82 -40.82 -0.36 3.78 16 33 H 0.10 0.56 7.95 -51.93 -0.41 0.15 16 34 H 0.10 0.61 7.95 -51.93 -0.41 0.20 16 35 H 0.42 5.34 6.93 -40.82 -0.28 5.05 16 36 H 0.15 0.56 6.73 -52.49 -0.35 0.21 16 37 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.13 3.36 6.13 -52.48 -0.32 3.04 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -30.23 351.67 -7.93 -38.17 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -3.28 Total: 10.35 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -5.31 Total: -16.10 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.20 Total: -37.16 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.11 Total: -4.17 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.23 -7.93 -38.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011041545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.460 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds