Wall clock time and date at job start Tue Mar 31 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.46218 * 126.96081 * 2 1 4 4 C 1.39754 * 134.16950 * 0.02732 * 3 2 1 5 5 C 1.36611 * 119.72839 * 179.97438 * 4 3 2 6 6 C 1.38841 * 120.45966 * 0.02562 * 5 4 3 7 7 C 1.37886 * 120.73036 * 359.97438 * 6 5 4 8 8 Cl 1.73599 * 120.08228 * 180.02562 * 7 6 5 9 9 C 1.39142 * 119.83779 * 0.02562 * 7 6 5 10 10 O 1.34723 * 133.23010 * 180.38550 * 9 7 6 11 11 C 1.34961 * 110.85493 * 180.08394 * 10 9 7 12 12 C 1.46812 * 125.14561 * 179.81438 * 11 10 9 13 13 O 1.21571 * 120.00322 * 179.69551 * 12 11 10 14 14 O 1.34863 * 119.99559 * 359.69309 * 12 11 10 15 15 C 1.45206 * 116.99691 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47021 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00041 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00033 * 180.02562 * 16 15 14 19 19 C 1.46500 * 120.00165 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46948 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00198 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99749 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99981 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99781 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47109 * 90.00314 * 24 22 20 26 26 H 1.48507 * 109.46754 * 210.00053 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99884 * 24 22 20 28 28 H 1.09003 * 109.47064 * 270.01803 * 1 2 3 29 29 H 1.08999 * 109.47712 * 30.02628 * 1 2 3 30 30 H 1.09001 * 109.47095 * 150.02264 * 1 2 3 31 31 H 1.07997 * 120.13377 * 359.96459 * 4 3 2 32 32 H 1.08001 * 119.76751 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.63045 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47122 * 299.99998 * 15 14 12 35 35 H 1.09000 * 109.47070 * 60.00023 * 15 14 12 36 36 H 0.97004 * 119.99472 * 359.97438 * 18 16 15 37 37 H 1.08996 * 109.47197 * 300.00087 * 19 18 16 38 38 H 1.09004 * 109.46923 * 59.99390 * 19 18 16 39 39 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1684 0.0000 4 6 2.1707 2.5492 0.0005 5 6 3.2383 3.4014 0.0008 6 6 4.5350 2.9052 0.0002 7 6 4.7695 1.5464 -0.0003 8 17 6.3977 0.9443 -0.0004 9 6 3.6977 0.6590 -0.0007 10 8 3.6130 -0.6856 0.0055 11 6 2.3242 -1.0858 -0.0001 12 6 1.8731 -2.4829 0.0003 13 8 0.6844 -2.7379 0.0006 14 8 2.7774 -3.4834 0.0002 15 6 2.2595 -4.8400 0.0000 16 6 3.4078 -5.8160 0.0006 17 8 4.5501 -5.4084 0.0017 18 7 3.1654 -7.1418 0.0000 19 6 4.2816 -8.0906 0.0000 20 6 3.7441 -9.4984 -0.0001 21 1 2.6777 -9.6694 -0.0006 22 6 4.6139 -10.5684 -0.0006 23 7 5.9124 -10.3602 -0.0005 24 14 3.9476 -12.3135 -0.0015 25 1 3.7712 -12.7753 -1.4017 26 1 4.9040 -13.2087 0.6982 27 1 2.6384 -12.3439 0.6986 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.1642 2.9408 0.0004 32 1 3.0726 4.4686 0.0016 33 1 5.3692 3.5911 0.0001 34 1 1.6498 -4.9963 0.8899 35 1 1.6500 -4.9961 -0.8901 36 1 2.2517 -7.4677 -0.0004 37 1 4.8915 -7.9340 -0.8896 38 1 4.8910 -7.9346 0.8903 39 1 6.5242 -11.1129 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011123349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:50 Heat of formation + Delta-G solvation = -97.687517 kcal Electronic energy + Delta-G solvation = -26752.757867 eV Core-core repulsion = 22460.136117 eV Total energy + Delta-G solvation = -4292.621750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 351.075 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.05496 -40.57914 -38.79673 -38.52383 -36.86667 -36.66092 -34.30391 -34.24898 -32.42671 -30.97967 -30.70218 -29.42788 -28.12068 -26.70792 -24.82405 -23.39337 -22.65433 -21.66626 -20.60271 -19.97126 -18.93922 -17.68971 -17.58336 -17.23676 -16.92890 -16.66298 -16.33229 -15.69360 -15.38414 -15.11552 -14.94561 -14.65197 -14.34866 -14.10904 -13.61952 -13.43477 -13.31253 -13.16440 -13.01793 -12.84717 -12.65229 -12.49077 -12.00901 -11.96733 -11.83827 -11.80880 -11.30575 -11.03530 -10.96491 -10.95046 -10.83003 -10.35269 -10.20832 -9.44950 -9.25182 -9.21407 -8.79167 -8.65671 -8.00478 -6.20013 -4.27627 -0.11401 0.68842 1.12360 1.64559 1.77596 2.38383 2.46255 3.00116 3.14661 3.22829 3.28943 3.31309 3.71273 3.98376 4.05891 4.22557 4.32241 4.47922 4.57441 4.62638 4.71274 4.90113 5.03272 5.14178 5.16885 5.25847 5.29053 5.31120 5.39013 5.44389 5.58346 5.75977 5.79199 5.93262 6.04910 6.43078 7.20618 7.26920 7.36414 7.45130 7.60134 7.91221 8.47730 8.69890 8.94513 9.38677 10.90086 Molecular weight = 351.08amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.001967 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.840842 B =14231.104347 C =15784.194951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.065 4.065 3 C -0.133 4.133 4 C -0.050 4.050 5 C -0.129 4.129 6 C -0.070 4.070 7 C -0.031 4.031 8 Cl -0.045 7.045 9 C 0.085 3.915 10 O -0.154 6.154 11 C -0.007 4.007 12 C 0.549 3.451 13 O -0.480 6.480 14 O -0.313 6.313 15 C 0.048 3.952 16 C 0.499 3.501 17 O -0.530 6.530 18 N -0.706 5.706 19 C 0.251 3.749 20 C -0.546 4.546 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 30.051 -0.008 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.067 4.067 3 C -0.134 4.134 4 C -0.068 4.068 5 C -0.148 4.148 6 C -0.089 4.089 7 C -0.058 4.058 8 Cl -0.016 7.016 9 C 0.035 3.965 10 O -0.054 6.054 11 C -0.055 4.055 12 C 0.393 3.607 13 O -0.369 6.369 14 O -0.227 6.227 15 C -0.029 4.029 16 C 0.281 3.719 17 O -0.407 6.407 18 N -0.356 5.356 19 C 0.131 3.869 20 C -0.584 4.584 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.521 5.521 24 Si 0.733 3.267 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.491 29.838 -0.001 31.311 hybrid contribution -0.563 -1.301 0.000 1.417 sum -10.055 28.537 -0.001 30.257 Atomic orbital electron populations 1.20538 0.86679 1.04438 1.03680 1.21403 0.97198 0.88786 0.99347 1.19671 0.91132 0.94483 1.08153 1.20456 1.00318 0.89833 0.96193 1.20774 0.91114 1.00611 1.02261 1.21018 0.98689 0.91573 0.97583 1.19810 0.84669 0.91657 1.09696 1.98428 1.18211 1.88094 1.96831 1.19308 0.94314 0.81661 1.01200 1.84264 1.26309 1.19751 1.75085 1.20406 0.81704 0.91658 1.11776 1.19235 0.84054 0.83664 0.73738 1.90914 1.16391 1.83331 1.46308 1.86743 1.37824 1.15311 1.82785 1.23020 0.96833 0.78032 1.05025 1.19824 0.89411 0.83633 0.79020 1.90740 1.22337 1.78342 1.49260 1.46355 1.12206 1.04567 1.72472 1.19188 0.84072 0.85553 0.98087 1.21201 0.93467 0.90131 1.53592 0.91736 1.24963 0.94731 0.99726 0.94616 1.69973 1.01638 1.31913 1.48595 0.86382 0.78733 0.83352 0.78243 1.20429 1.20977 1.19716 0.89787 0.90627 0.88762 0.84338 0.83902 0.83307 0.87976 0.87973 0.77396 0.95218 0.95213 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 9.81 36.01 0.35 -0.39 16 2 C -0.07 -0.69 6.39 -102.26 -0.65 -1.34 16 3 C -0.13 -1.31 6.37 -105.20 -0.67 -1.98 16 4 C -0.05 -0.32 10.06 -39.60 -0.40 -0.72 16 5 C -0.13 -0.69 9.98 -39.95 -0.40 -1.09 16 6 C -0.07 -0.47 9.79 -39.49 -0.39 -0.86 16 7 C -0.03 -0.32 6.33 -39.37 -0.25 -0.57 16 8 Cl -0.04 -0.50 28.96 -51.86 -1.50 -2.00 16 9 C 0.09 1.02 7.20 -38.32 -0.28 0.75 16 10 O -0.15 -2.25 10.60 1.93 0.02 -2.23 16 11 C -0.01 -0.10 7.10 -36.96 -0.26 -0.36 16 12 C 0.55 7.88 7.94 34.20 0.27 8.15 16 13 O -0.48 -6.66 14.41 -19.32 -0.28 -6.94 16 14 O -0.31 -5.22 9.77 -48.44 -0.47 -5.70 16 15 C 0.05 0.72 5.96 36.01 0.21 0.94 16 16 C 0.50 10.06 7.91 -10.99 -0.09 9.98 16 17 O -0.53 -13.27 16.50 -14.11 -0.23 -13.50 16 18 N -0.71 -14.54 5.55 -61.47 -0.34 -14.88 16 19 C 0.25 6.59 5.43 -5.20 -0.03 6.56 16 20 C -0.55 -14.61 9.28 -34.44 -0.32 -14.93 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.88 -25.92 13.29 55.43 0.74 -25.18 16 24 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.83 6.38 -51.93 -0.33 0.50 16 31 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 32 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 33 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -34.52 368.56 -8.53 -43.05 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.01 Total: 0.34 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -2.99 Total: 5.80 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.40 Total: -40.06 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.96 Total: -28.36 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.52 -8.53 -43.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011123349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.634 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds