Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35794 * 117.00035 * 2 1 4 4 C 1.38588 * 119.86108 * 0.02562 * 3 2 1 5 5 C 1.38581 * 120.08442 * 180.02562 * 4 3 2 6 6 N 1.39418 * 120.09281 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00127 * 34.95836 * 6 5 4 8 8 O 1.21289 * 119.99858 * 5.27024 * 7 6 5 9 9 C 1.50701 * 120.00101 * 185.27762 * 7 6 5 10 10 C 1.52998 * 109.46885 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46739 * 299.99283 * 9 7 6 12 12 C 1.52997 * 109.47164 * 59.99646 * 9 7 6 13 13 C 1.40475 * 119.81137 * 359.97438 * 5 4 3 14 14 C 1.47077 * 120.13084 * 179.97438 * 13 5 4 15 15 O 1.21579 * 120.00412 * 355.06733 * 14 13 5 16 16 O 1.34819 * 119.99901 * 175.06638 * 14 13 5 17 17 C 1.34869 * 117.00030 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00062 * 0.02562 * 17 16 14 19 19 C 1.38782 * 120.00246 * 180.02562 * 17 16 14 20 20 N 1.31441 * 119.99499 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00335 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47585 * 59.99626 * 21 19 17 23 23 H 1.48499 * 109.47287 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47286 * 299.99764 * 21 19 17 25 25 C 1.39970 * 119.73185 * 0.02562 * 13 5 4 26 26 C 1.37916 * 119.91076 * 359.97438 * 25 13 5 27 27 O 1.36058 * 119.90530 * 180.02562 * 26 25 13 28 28 C 1.42905 * 117.00158 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47349 * 59.99253 * 1 2 3 30 30 H 1.08996 * 109.46948 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46732 * 299.99126 * 1 2 3 32 32 H 1.07997 * 119.95935 * 359.97438 * 4 3 2 33 33 H 0.96995 * 119.99789 * 214.95205 * 6 5 4 34 34 H 1.09000 * 109.47253 * 59.99764 * 10 9 7 35 35 H 1.09007 * 109.47023 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47565 * 299.99676 * 10 9 7 37 37 H 1.09001 * 109.47182 * 60.00169 * 11 9 7 38 38 H 1.08998 * 109.46801 * 179.97438 * 11 9 7 39 39 H 1.09000 * 109.47224 * 300.00129 * 11 9 7 40 40 H 1.08997 * 109.47271 * 60.00333 * 12 9 7 41 41 H 1.08998 * 109.47259 * 180.02562 * 12 9 7 42 42 H 1.09001 * 109.46913 * 299.99927 * 12 9 7 43 43 H 0.96998 * 119.99698 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03907 * 179.72221 * 25 13 5 45 45 H 1.08995 * 109.46871 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.46451 * 300.00022 * 28 27 26 47 47 H 1.08997 * 109.47038 * 59.99932 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2879 2.3704 0.0005 5 6 1.9122 3.6076 0.0000 6 7 1.1502 4.7751 0.0011 7 6 -0.0184 4.8166 0.6712 8 8 -0.3613 3.8725 1.3511 9 6 -0.8990 6.0358 0.5757 10 6 -2.1549 5.8254 1.4239 11 6 -0.1352 7.2580 1.0889 12 6 -1.3013 6.2612 -0.8832 13 6 3.3150 3.6820 -0.0005 14 6 3.9849 4.9913 -0.0017 15 8 3.3280 6.0103 -0.0927 16 8 5.3275 5.0616 0.0982 17 6 5.8784 6.2927 0.0916 18 1 5.2482 7.1659 0.0093 19 6 7.2551 6.4374 0.1907 20 7 8.0220 5.3747 0.2913 21 14 8.0180 8.1424 0.1823 22 1 7.4915 8.9261 1.3286 23 1 9.4936 8.0251 0.2996 24 1 7.6752 8.8319 -1.0876 25 6 4.0725 2.5050 -0.0011 26 6 3.4395 1.2797 -0.0005 27 8 4.1759 0.1357 -0.0005 28 6 5.5977 0.2793 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2096 2.3105 0.0005 33 1 1.4612 5.5576 -0.4804 34 1 -1.8686 5.6645 2.4632 35 1 -2.7917 6.7075 1.3551 36 1 -2.6990 4.9548 1.0579 37 1 0.7594 7.4076 0.4844 38 1 -0.7720 8.1399 1.0194 39 1 0.1514 7.0973 2.1282 40 1 -1.8455 5.3905 -1.2488 41 1 -1.9379 7.1433 -0.9524 42 1 -0.4067 6.4109 -1.4877 43 1 8.9843 5.4759 0.3602 44 1 5.1513 2.5564 -0.0060 45 1 6.0625 -0.7066 -0.0001 46 1 5.9075 0.8271 -0.8906 47 1 5.9076 0.8271 0.8894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011171114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = -163.588656 kcal Electronic energy + Delta-G solvation = -32486.581943 eV Core-core repulsion = 28022.059530 eV Total energy + Delta-G solvation = -4464.522414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 351.161 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.96638 -39.85891 -39.02310 -38.24051 -36.94926 -35.60154 -35.11823 -33.89145 -32.28644 -30.43355 -29.33214 -27.44692 -27.37191 -27.12632 -26.87868 -25.61686 -23.79323 -22.82266 -21.60268 -20.51110 -19.21995 -18.33231 -17.92441 -17.69858 -16.88451 -16.61926 -16.03301 -15.82749 -15.76402 -15.05506 -15.04228 -14.80785 -14.62336 -14.44209 -14.40833 -14.21869 -13.94868 -13.54566 -13.34263 -12.92620 -12.49599 -12.46588 -12.34075 -12.25874 -12.11812 -12.00345 -11.76687 -11.73108 -11.42904 -11.39332 -11.18281 -11.10857 -11.02748 -11.00391 -10.94089 -10.55654 -10.53845 -9.97834 -9.64947 -9.57030 -9.09672 -8.71069 -8.34943 -7.35493 -6.56606 -4.19081 1.13977 1.48029 2.73940 3.06428 3.10908 3.14704 3.21238 3.35473 3.42967 3.53735 3.82340 4.19227 4.45411 4.54779 4.69982 4.78987 4.98401 5.04551 5.11975 5.16893 5.23989 5.30203 5.38169 5.46501 5.49850 5.51931 5.53059 5.55777 5.65238 5.72219 5.76177 5.78456 5.83138 5.85586 5.93302 6.02247 6.04065 6.16407 6.26030 6.40765 6.59411 6.75720 6.93218 7.18115 7.24489 7.66160 7.74911 7.82870 8.28450 8.57720 8.91966 9.68886 10.60740 Molecular weight = 351.16amu Principal moments of inertia in cm(-1) A = 0.007621 B = 0.004567 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.979378 B = 6129.833096 C = 9520.495984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.134 3.866 4 C -0.192 4.192 5 C 0.202 3.798 6 N -0.650 5.650 7 C 0.521 3.479 8 O -0.533 6.533 9 C -0.083 4.083 10 C -0.126 4.126 11 C -0.145 4.145 12 C -0.142 4.142 13 C -0.119 4.119 14 C 0.443 3.557 15 O -0.562 6.562 16 O -0.200 6.200 17 C -0.375 4.375 18 H 0.099 0.901 19 C 0.043 3.957 20 N -0.857 5.857 21 Si 0.946 3.054 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.107 4.107 26 C 0.073 3.927 27 O -0.310 6.310 28 C 0.024 3.976 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.150 0.850 33 H 0.427 0.573 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.273 0.727 44 H 0.158 0.842 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 -4.355 -2.120 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.087 3.913 4 C -0.213 4.213 5 C 0.106 3.894 6 N -0.302 5.302 7 C 0.309 3.691 8 O -0.409 6.409 9 C -0.086 4.086 10 C -0.183 4.183 11 C -0.203 4.203 12 C -0.199 4.199 13 C -0.123 4.123 14 C 0.293 3.707 15 O -0.462 6.462 16 O -0.106 6.106 17 C -0.451 4.451 18 H 0.116 0.884 19 C -0.163 4.163 20 N -0.493 5.493 21 Si 0.770 3.230 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.194 1.194 25 C -0.126 4.126 26 C 0.027 3.973 27 O -0.224 6.224 28 C -0.071 4.071 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.168 0.832 33 H 0.272 0.728 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.176 0.824 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.286 -5.139 -1.660 15.272 hybrid contribution 0.687 1.486 -0.154 1.644 sum -13.599 -3.653 -1.814 14.197 Atomic orbital electron populations 1.23072 0.78641 1.03572 1.01674 1.86111 1.21012 1.25820 1.88588 1.18142 0.88810 0.84769 0.99591 1.20784 1.00694 0.89533 1.10239 1.17172 0.88341 0.86312 0.97624 1.43869 1.20239 1.14954 1.51095 1.20802 0.81175 0.89002 0.78125 1.90657 1.72892 1.38093 1.39274 1.20787 0.95850 0.93747 0.98248 1.21659 0.95102 1.01651 0.99901 1.21914 1.00554 0.95608 1.02199 1.21884 1.02232 1.02465 0.93344 1.18872 0.90878 0.92368 1.10179 1.20342 0.82934 0.87680 0.79770 1.90403 1.65633 1.36928 1.53270 1.83909 1.18376 1.34181 1.74094 1.21260 0.90497 0.82101 1.51207 0.88375 1.25383 0.95001 0.99878 0.95992 1.69964 1.05443 1.29148 1.44735 0.85700 0.77816 0.80028 0.79431 1.19375 1.20265 1.19351 1.21331 1.01479 0.89334 1.00484 1.17999 0.87990 0.86086 1.05192 1.86117 1.18927 1.27731 1.89605 1.23098 0.78302 1.03523 1.02217 0.92888 0.88395 0.92206 0.83240 0.72790 0.91886 0.91991 0.92058 0.90883 0.91428 0.91987 0.92142 0.91164 0.91761 0.91757 0.82432 0.88482 0.92301 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.74 10.26 -33.82 -0.35 -5.09 16 3 C 0.13 2.32 6.70 -38.95 -0.26 2.06 16 4 C -0.19 -3.30 7.61 -39.33 -0.30 -3.60 16 5 C 0.20 3.83 6.26 -83.44 -0.52 3.31 16 6 N -0.65 -11.30 4.47 -9.67 -0.04 -11.35 16 7 C 0.52 8.32 6.20 -10.98 -0.07 8.25 16 8 O -0.53 -9.60 13.77 5.55 0.08 -9.53 16 9 C -0.08 -1.01 0.87 -155.66 -0.14 -1.15 16 10 C -0.13 -1.35 7.76 37.16 0.29 -1.06 16 11 C -0.15 -1.76 8.37 37.16 0.31 -1.45 16 12 C -0.14 -1.41 8.38 37.16 0.31 -1.09 16 13 C -0.12 -2.49 5.89 -104.82 -0.62 -3.11 16 14 C 0.44 10.82 7.81 34.32 0.27 11.09 16 15 O -0.56 -13.74 13.12 -19.33 -0.25 -13.99 16 16 O -0.20 -5.49 8.99 -21.92 -0.20 -5.69 16 17 C -0.37 -10.53 9.65 30.93 0.30 -10.23 16 18 H 0.10 2.73 6.86 -52.49 -0.36 2.37 16 19 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 20 N -0.86 -23.79 13.67 55.49 0.76 -23.03 16 21 Si 0.95 20.32 29.55 -169.99 -5.02 15.29 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.11 -2.07 8.59 -39.05 -0.34 -2.40 16 26 C 0.07 1.32 6.69 -39.20 -0.26 1.06 16 27 O -0.31 -5.21 10.27 -34.65 -0.36 -5.57 16 28 C 0.02 0.32 9.81 101.05 0.99 1.31 16 29 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 32 H 0.15 2.39 4.73 -52.49 -0.25 2.14 16 33 H 0.43 7.45 5.16 -40.82 -0.21 7.24 16 34 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.07 0.99 7.45 -51.93 -0.39 0.61 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.66 7.69 -51.93 -0.40 0.26 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.16 3.10 5.82 -52.49 -0.31 2.79 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.79 7.65 -51.93 -0.40 0.39 16 47 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -32.65 391.13 -5.06 -37.72 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.43 Total: 10.04 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 0.86 Total: 5.31 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.72 Total: -34.38 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.08 Total: -39.87 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.65 -5.06 -37.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011171114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.873 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds