Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99961 * 2 1 4 4 H 1.48500 * 109.47014 * 239.99789 * 3 2 1 5 5 H 1.48505 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47369 * 119.99725 * 3 2 1 7 7 C 1.37881 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99606 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00120 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46721 * 175.54380 * 9 7 2 11 11 C 1.46901 * 110.99997 * 199.19900 * 10 9 7 12 12 C 1.50698 * 109.46781 * 66.04990 * 11 10 9 13 13 C 1.38658 * 120.78946 * 269.71700 * 12 11 10 14 14 C 1.38201 * 119.16012 * 179.80313 * 13 12 11 15 15 N 1.31870 * 120.76673 * 0.48304 * 14 13 12 16 16 C 1.31869 * 121.72384 * 359.74667 * 15 14 13 17 17 C 1.38204 * 120.76733 * 0.02562 * 16 15 14 18 18 C 1.46905 * 111.00007 * 75.24844 * 10 9 7 19 19 N 1.46501 * 109.47342 * 208.89821 * 18 10 9 20 20 C 1.34518 * 124.45726 * 260.09940 * 19 18 10 21 21 O 1.21447 * 125.71455 * 0.04156 * 20 19 18 22 22 C 1.47819 * 108.57847 * 180.02562 * 20 19 18 23 23 C 1.38563 * 134.29469 * 180.02562 * 22 20 19 24 24 C 1.38614 * 119.71701 * 180.21192 * 23 22 20 25 25 C 1.38220 * 120.45957 * 359.51391 * 24 23 22 26 26 C 1.38615 * 120.45979 * 0.47778 * 25 24 23 27 27 C 1.38566 * 119.72341 * 359.76651 * 26 25 24 28 28 C 1.34517 * 124.45825 * 80.11912 * 19 18 10 29 29 O 1.21448 * 125.71650 * 0.02562 * 28 19 18 30 30 H 0.96999 * 120.00207 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46861 * 55.54866 * 9 7 2 32 32 H 1.08991 * 109.47337 * 295.54410 * 9 7 2 33 33 H 1.08997 * 109.47025 * 186.05024 * 11 10 9 34 34 H 1.08996 * 109.47068 * 306.04798 * 11 10 9 35 35 H 1.07999 * 120.41769 * 0.02562 * 13 12 11 36 36 H 1.08003 * 119.61306 * 180.21154 * 14 13 12 37 37 H 1.07997 * 119.61653 * 180.02562 * 16 15 14 38 38 H 1.07997 * 120.42212 * 179.97438 * 17 16 15 39 39 H 1.09001 * 109.47240 * 88.89506 * 18 10 9 40 40 H 1.09002 * 109.46865 * 328.90177 * 18 10 9 41 41 H 1.07995 * 120.14087 * 359.93379 * 23 22 20 42 42 H 1.08008 * 119.76739 * 179.72866 * 24 23 22 43 43 H 1.08001 * 119.77366 * 180.24600 * 25 24 23 44 44 H 1.08001 * 120.14277 * 179.74742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2020 -3.6136 -0.1065 11 6 1.5294 -4.8379 -0.5611 12 6 1.0402 -4.6472 -1.9737 13 6 -0.2287 -4.1476 -2.2240 14 6 -0.6414 -3.9825 -3.5326 15 7 0.1524 -4.3028 -4.5357 16 6 1.3634 -4.7847 -4.3351 17 6 1.8461 -4.9729 -3.0539 18 6 2.8967 -3.8372 1.1685 19 7 4.2254 -4.3971 0.9091 20 6 4.5345 -5.7023 1.0114 21 8 3.7681 -6.5897 1.3278 22 6 5.9631 -5.8758 0.6738 23 6 6.8165 -6.9655 0.6081 24 6 8.1429 -6.7790 0.2514 25 6 8.6168 -5.5158 -0.0486 26 6 7.7747 -4.4164 0.0127 27 6 6.4475 -4.5869 0.3726 28 6 5.2970 -3.6737 0.5377 29 8 5.3162 -2.4714 0.3672 30 1 -0.4850 0.8400 -0.0004 31 1 0.5662 -2.5233 -0.8471 32 1 0.6852 -2.5921 0.9275 33 1 2.2312 -5.6713 -0.5290 34 1 0.6825 -5.0508 0.0911 35 1 -0.8850 -3.8874 -1.4067 36 1 -1.6271 -3.5906 -3.7359 37 1 1.9851 -5.0354 -5.1819 38 1 2.8386 -5.3683 -2.8961 39 1 2.3216 -4.5338 1.7784 40 1 2.9987 -2.8897 1.6977 41 1 6.4508 -7.9553 0.8382 42 1 8.8098 -7.6273 0.2042 43 1 9.6514 -5.3837 -0.3290 44 1 8.1515 -3.4311 -0.2188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013281649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = 38.671539 kcal Electronic energy + Delta-G solvation = -30761.548699 eV Core-core repulsion = 26645.398616 eV Total energy + Delta-G solvation = -4116.150083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.14048 -39.80810 -38.62655 -38.36347 -36.84124 -35.38587 -32.91660 -32.45677 -31.32746 -31.14427 -30.80309 -27.66184 -26.91263 -25.02494 -24.53960 -23.20639 -22.72979 -22.17985 -21.90383 -20.48281 -19.70773 -17.75500 -17.16489 -16.75421 -16.39773 -16.32779 -16.09134 -15.81157 -15.24233 -15.19275 -14.94599 -14.63357 -14.46974 -14.19618 -14.17287 -13.76539 -13.74070 -13.39195 -13.24652 -12.90558 -12.85613 -12.53716 -12.07289 -11.89193 -11.83379 -11.58342 -11.28129 -11.11265 -10.71430 -10.69422 -10.42811 -10.14763 -9.98998 -9.66739 -9.43322 -9.41462 -9.31986 -9.13446 -9.06141 -8.71178 -8.42654 -7.64375 -6.04156 -4.04243 0.02149 0.77497 1.55642 1.64345 2.01413 2.54387 3.14771 3.37216 3.39767 3.45834 3.46183 3.61616 4.14749 4.34396 4.43541 4.45557 4.62493 4.78716 4.83185 4.84123 5.01556 5.04699 5.12217 5.18202 5.31408 5.35127 5.48800 5.53916 5.55207 5.71551 5.73338 5.78921 5.86376 5.88707 5.94556 5.97773 6.06085 6.16957 6.36262 6.38480 6.75479 6.76358 7.03490 7.09251 7.11504 7.38313 7.73784 7.79929 7.91950 8.06030 8.33640 8.39146 9.06771 9.60644 11.06372 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.008196 B = 0.004334 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.610510 B = 6458.479368 C = 8462.409673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.191 3.809 10 N -0.539 5.539 11 C 0.089 3.911 12 C -0.019 4.019 13 C -0.149 4.149 14 C 0.095 3.905 15 N -0.492 5.492 16 C 0.089 3.911 17 C -0.154 4.154 18 C 0.283 3.717 19 N -0.563 5.563 20 C 0.573 3.427 21 O -0.476 6.476 22 C -0.140 4.140 23 C -0.049 4.049 24 C -0.104 4.104 25 C -0.098 4.098 26 C -0.051 4.051 27 C -0.130 4.130 28 C 0.569 3.431 29 O -0.432 6.432 30 H 0.261 0.739 31 H 0.051 0.949 32 H -0.006 1.006 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.190 -15.163 0.096 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.091 0.909 9 C 0.067 3.933 10 N -0.266 5.266 11 C -0.039 4.039 12 C -0.028 4.028 13 C -0.169 4.169 14 C -0.061 4.061 15 N -0.202 5.202 16 C -0.068 4.068 17 C -0.174 4.174 18 C 0.073 3.927 19 N -0.306 5.306 20 C 0.362 3.638 21 O -0.349 6.349 22 C -0.144 4.144 23 C -0.068 4.068 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.070 4.070 27 C -0.133 4.133 28 C 0.356 3.644 29 O -0.299 6.299 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.012 0.988 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.153 0.847 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.555 -14.525 -0.994 19.225 hybrid contribution 0.142 0.725 1.382 1.567 sum 12.697 -13.800 0.388 18.756 Atomic orbital electron populations 1.69930 1.05994 1.26944 1.51009 1.24923 0.94797 0.99218 0.95277 0.86558 0.79393 0.82634 0.78859 1.20206 1.21493 1.20211 1.21227 0.94193 0.89393 1.49995 0.90912 1.19944 0.89989 0.86469 0.96888 1.61797 1.31940 1.05064 1.27751 1.21100 0.97517 0.93733 0.91522 1.20101 0.93129 0.93984 0.95539 1.22099 0.96872 0.99244 0.98676 1.22625 0.99078 0.96057 0.88362 1.67594 1.05121 1.11191 1.36292 1.22577 0.92408 0.95891 0.95940 1.21878 1.00269 1.01970 0.93329 1.22146 0.78932 0.99873 0.91710 1.46889 1.12737 1.08690 1.62279 1.18394 0.87451 0.82296 0.75653 1.90774 1.56351 1.44413 1.43323 1.20703 0.94667 0.95058 1.03951 1.20765 0.92277 0.98007 0.95727 1.21398 0.94992 0.97856 0.97975 1.21426 1.00168 0.92089 0.97970 1.20824 0.90599 1.00192 0.95347 1.20823 0.95296 0.94488 1.02742 1.18271 0.82942 0.87078 0.76107 1.90876 1.83678 1.12732 1.42652 0.92900 0.93144 0.98793 0.90945 0.93820 0.84742 0.83087 0.83392 0.85655 0.91205 0.86424 0.84327 0.84403 0.84356 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.12 8.51 -34.44 -0.29 -14.41 16 8 H 0.07 2.09 7.29 -52.49 -0.38 1.71 16 9 C 0.19 4.69 4.53 -4.98 -0.02 4.67 16 10 N -0.54 -11.15 4.52 -241.43 -1.09 -12.24 16 11 C 0.09 1.59 4.99 -4.98 -0.02 1.57 16 12 C -0.02 -0.34 4.96 -104.32 -0.52 -0.86 16 13 C -0.15 -2.65 8.01 -39.44 -0.32 -2.96 16 14 C 0.10 1.63 11.18 -17.55 -0.20 1.43 16 15 N -0.49 -8.65 10.36 -13.25 -0.14 -8.79 16 16 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 17 C -0.15 -2.55 9.82 -39.44 -0.39 -2.94 16 18 C 0.28 5.28 5.38 -63.31 -0.34 4.94 16 19 N -0.56 -9.52 2.86 -120.90 -0.35 -9.86 16 20 C 0.57 8.73 7.54 -12.46 -0.09 8.63 16 21 O -0.48 -7.92 17.04 5.41 0.09 -7.83 16 22 C -0.14 -1.73 6.40 -104.83 -0.67 -2.40 16 23 C -0.05 -0.44 10.09 -39.32 -0.40 -0.83 16 24 C -0.10 -0.69 10.03 -39.45 -0.40 -1.08 16 25 C -0.10 -0.68 10.03 -39.45 -0.40 -1.07 16 26 C -0.05 -0.50 10.09 -39.32 -0.40 -0.90 16 27 C -0.13 -1.70 6.41 -104.83 -0.67 -2.37 16 28 C 0.57 9.76 8.02 -12.46 -0.10 9.66 16 29 O -0.43 -8.98 17.29 5.41 0.09 -8.89 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.05 1.31 5.04 -51.93 -0.26 1.05 16 32 H -0.01 -0.15 8.01 -51.93 -0.42 -0.56 16 33 H 0.07 1.24 7.02 -51.93 -0.36 0.88 16 34 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.13 2.34 7.69 -52.49 -0.40 1.94 16 36 H 0.15 2.19 8.06 -52.48 -0.42 1.77 16 37 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.07 1.20 7.49 -51.93 -0.39 0.81 16 40 H 0.12 2.40 7.20 -51.93 -0.37 2.02 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 43 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -33.74 381.41 -10.54 -44.28 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.11 Total: 1.78 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -5.51 Total: 3.87 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.84 Total: -56.24 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.19 Total: -16.72 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.74 -10.54 -44.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013281649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.953 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds