Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86800 * 120.00147 * 2 1 4 4 H 1.48501 * 109.46654 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47132 * 299.99652 * 3 2 1 6 6 H 1.48500 * 109.47207 * 59.99741 * 3 2 1 7 7 C 1.38635 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00374 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.35778 * 117.00091 * 174.96458 * 9 7 2 11 11 C 1.38900 * 119.99872 * 5.34468 * 10 9 7 12 12 C 1.38004 * 120.00317 * 180.02562 * 11 10 9 13 13 C 1.38921 * 119.99715 * 0.02562 * 12 11 10 14 14 N 1.39996 * 119.99927 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99696 * 35.12513 * 14 13 12 16 16 O 1.21290 * 120.00775 * 355.48751 * 15 14 13 17 17 C 1.50700 * 119.99491 * 175.48975 * 15 14 13 18 18 C 1.53002 * 109.47111 * 179.97438 * 17 15 14 19 19 N 1.46498 * 109.47245 * 180.02562 * 18 17 15 20 20 C 1.36830 * 125.06367 * 264.69661 * 19 18 17 21 21 C 1.34237 * 109.93266 * 179.81161 * 20 19 18 22 22 C 1.46492 * 106.99357 * 0.43909 * 21 20 19 23 23 C 1.39631 * 134.02960 * 179.76051 * 22 21 20 24 24 C 1.36624 * 119.76624 * 179.97438 * 23 22 21 25 25 C 1.38832 * 120.52430 * 359.97438 * 24 23 22 26 26 C 1.37752 * 120.66894 * 359.97438 * 25 24 23 27 27 C 1.37693 * 125.06362 * 85.00110 * 19 18 17 28 28 C 1.38918 * 119.99544 * 0.24955 * 13 12 11 29 29 C 1.38004 * 120.00012 * 359.49461 * 28 13 12 30 30 H 0.97005 * 119.99517 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.00086 * 359.97438 * 11 10 9 32 32 H 1.08006 * 119.99940 * 179.97438 * 12 11 10 33 33 H 0.96993 * 119.99439 * 215.12312 * 14 13 12 34 34 H 1.09002 * 109.47081 * 60.00060 * 17 15 14 35 35 H 1.08995 * 109.47542 * 300.00015 * 17 15 14 36 36 H 1.09002 * 109.46941 * 60.00168 * 18 17 15 37 37 H 1.08998 * 109.47300 * 299.99755 * 18 17 15 38 38 H 1.07997 * 125.03602 * 359.97438 * 20 19 18 39 39 H 1.08001 * 126.50467 * 180.14081 * 21 20 19 40 40 H 1.08003 * 120.11859 * 0.02562 * 23 22 21 41 41 H 1.07996 * 119.74027 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.66908 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.10785 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.99919 * 179.74264 * 28 13 12 45 45 H 1.07997 * 119.99965 * 180.25310 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3681 0.0005 10 6 2.0702 -3.5046 -0.1051 11 6 3.4575 -3.4375 -0.0950 12 6 4.2051 -4.5925 -0.2029 13 6 3.5700 -5.8223 -0.3222 14 7 4.3283 -6.9939 -0.4322 15 6 5.4940 -7.1072 0.2347 16 8 5.9267 -6.1650 0.8643 17 6 6.2599 -8.4045 0.1982 18 6 7.5369 -8.2665 1.0297 19 7 8.2817 -9.5275 0.9937 20 6 8.2038 -10.5138 1.9389 21 6 9.0090 -11.5340 1.6032 22 6 9.6635 -11.1668 0.3451 23 6 10.5928 -11.7965 -0.4853 24 6 11.0178 -11.1722 -1.6237 25 6 10.5326 -9.9162 -1.9623 26 6 9.6146 -9.2774 -1.1581 27 6 9.1691 -9.8941 0.0067 28 6 2.1825 -5.8887 -0.3380 29 6 1.4350 -4.7342 -0.2248 30 1 -0.4850 0.8401 -0.0004 31 1 3.9513 -2.4813 -0.0035 32 1 5.2838 -4.5402 -0.1955 33 1 4.0147 -7.7240 -0.9883 34 1 6.5220 -8.6428 -0.8327 35 1 5.6424 -9.2028 0.6098 36 1 7.2751 -8.0280 2.0606 37 1 8.1543 -7.4684 0.6176 38 1 7.5841 -10.4780 2.8226 39 1 9.1513 -12.4496 2.1580 40 1 10.9737 -12.7741 -0.2289 41 1 11.7363 -11.6598 -2.2659 42 1 10.8783 -9.4351 -2.8653 43 1 9.2434 -8.3003 -1.4299 44 1 1.6888 -6.8444 -0.4349 45 1 0.3564 -4.7863 -0.2330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014940823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = 30.774357 kcal Electronic energy + Delta-G solvation = -28175.551753 eV Core-core repulsion = 24124.485134 eV Total energy + Delta-G solvation = -4051.066619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.142 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.61889 -40.26046 -38.76352 -37.39301 -36.61709 -34.10000 -34.05425 -32.23751 -31.41791 -30.26740 -29.60275 -29.01955 -27.79259 -25.42828 -24.56747 -22.87440 -22.40652 -21.80078 -21.42953 -20.37933 -20.13240 -18.20600 -17.79905 -17.48606 -16.77159 -16.47783 -16.43384 -15.78955 -15.67709 -15.18968 -14.60584 -14.50345 -14.25202 -14.13497 -13.89981 -13.64768 -13.58262 -13.47251 -13.10655 -12.94733 -12.84972 -12.79956 -12.57650 -11.93317 -11.80451 -11.67776 -11.59862 -11.58633 -11.54476 -11.09522 -11.07524 -10.79092 -10.44810 -9.99055 -9.82668 -9.76163 -9.23827 -8.75025 -8.44207 -8.26897 -7.92726 -7.00985 -6.48396 -4.06017 0.87925 1.37961 1.97832 2.14889 2.38825 2.46784 2.70276 3.11266 3.12998 3.18568 3.25821 3.67893 3.94650 4.33198 4.35674 4.40216 4.51186 4.52980 4.70502 4.78409 4.88257 5.01448 5.02903 5.06466 5.19411 5.20938 5.30265 5.42265 5.43910 5.57140 5.61188 5.68157 5.68910 5.81490 6.06604 6.10997 6.21944 6.26723 6.36655 6.50719 6.54384 6.65884 6.78705 6.93602 6.96785 7.01520 7.03248 7.25262 7.38790 7.56392 7.71356 7.96692 8.20999 8.97443 9.66059 10.69424 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.001674 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.803490 B =16720.141468 C =17250.586705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.147 3.853 11 C -0.221 4.221 12 C -0.063 4.063 13 C 0.029 3.971 14 N -0.657 5.657 15 C 0.510 3.490 16 O -0.527 6.527 17 C -0.157 4.157 18 C 0.126 3.874 19 N -0.483 5.483 20 C 0.054 3.946 21 C -0.208 4.208 22 C -0.111 4.111 23 C -0.073 4.073 24 C -0.149 4.149 25 C -0.101 4.101 26 C -0.127 4.127 27 C 0.097 3.903 28 C -0.091 4.091 29 C -0.178 4.178 30 H 0.270 0.730 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.403 0.597 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.168 0.832 39 H 0.146 0.854 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.151 -23.138 -1.282 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.079 6.079 10 C 0.093 3.907 11 C -0.241 4.241 12 C -0.083 4.083 13 C -0.064 4.064 14 N -0.301 5.301 15 C 0.296 3.704 16 O -0.404 6.404 17 C -0.198 4.198 18 C 0.004 3.996 19 N -0.166 5.166 20 C -0.071 4.071 21 C -0.233 4.233 22 C -0.115 4.115 23 C -0.092 4.092 24 C -0.168 4.168 25 C -0.121 4.121 26 C -0.148 4.148 27 C -0.009 4.009 28 C -0.112 4.112 29 C -0.198 4.198 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.237 0.763 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.185 0.815 39 H 0.163 0.837 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.846 -21.963 -0.743 27.689 hybrid contribution 0.179 0.428 -0.254 0.529 sum 17.025 -21.535 -0.998 27.470 Atomic orbital electron populations 1.70056 1.05953 1.27617 1.45992 1.25297 0.95864 0.98868 0.96501 0.85639 0.79209 0.80292 0.78272 1.19037 1.20108 1.20111 1.21393 0.91894 0.80767 1.52644 0.88930 1.83974 1.34322 1.11447 1.78138 1.19418 0.90279 0.88147 0.92835 1.21113 0.93581 0.98797 1.10634 1.20838 0.99748 0.90313 0.97374 1.17249 0.89920 0.85227 1.13969 1.43184 1.21663 1.17719 1.47544 1.20341 0.81555 0.89422 0.79114 1.90740 1.67452 1.39929 1.42274 1.22012 0.97344 0.96932 1.03473 1.21488 0.91668 0.83686 1.02753 1.44070 1.36459 1.16600 1.19434 1.21879 1.01856 0.88497 0.94820 1.21673 1.03160 1.00589 0.97868 1.19246 1.00645 0.94609 0.97045 1.20264 0.95896 0.99255 0.93764 1.20627 1.02202 0.96039 0.97923 1.20819 0.96801 0.95264 0.99177 1.20088 1.00699 1.00429 0.93576 1.18291 0.94810 0.95539 0.92226 1.20356 0.91422 0.97486 1.01887 1.19999 0.99525 0.89845 1.10442 0.92035 0.85160 0.85751 0.76291 0.88322 0.88147 0.88062 0.88624 0.81458 0.83667 0.86234 0.86189 0.85840 0.86317 0.86731 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.39 -10.89 9.48 30.88 0.29 -10.60 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.18 -4.97 9.75 0.00 0.00 -4.97 16 10 C 0.15 3.53 6.65 -39.09 -0.26 3.27 16 11 C -0.22 -4.92 9.16 -39.42 -0.36 -5.28 16 12 C -0.06 -1.23 8.69 -39.41 -0.34 -1.57 16 13 C 0.03 0.48 6.30 -83.62 -0.53 -0.04 16 14 N -0.66 -8.18 5.34 -9.82 -0.05 -8.23 16 15 C 0.51 6.29 7.67 -10.99 -0.08 6.20 16 16 O -0.53 -8.63 13.42 5.55 0.07 -8.56 16 17 C -0.16 -1.27 6.03 -27.88 -0.17 -1.44 16 18 C 0.13 1.10 5.29 -4.04 -0.02 1.08 16 19 N -0.48 -4.42 2.78 -114.43 -0.32 -4.73 16 20 C 0.05 0.44 11.27 -16.73 -0.19 0.25 16 21 C -0.21 -1.79 11.08 -37.67 -0.42 -2.21 16 22 C -0.11 -1.12 6.37 -105.14 -0.67 -1.79 16 23 C -0.07 -0.65 10.05 -39.64 -0.40 -1.04 16 24 C -0.15 -1.21 9.97 -39.94 -0.40 -1.61 16 25 C -0.10 -0.85 10.01 -39.54 -0.40 -1.25 16 26 C -0.13 -1.20 10.00 -39.43 -0.39 -1.60 16 27 C 0.10 1.00 6.81 -83.99 -0.57 0.43 16 28 C -0.09 -1.54 9.96 -39.42 -0.39 -1.93 16 29 C -0.18 -3.63 9.99 -39.42 -0.39 -4.03 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.13 2.93 5.63 -52.48 -0.30 2.63 16 32 H 0.12 2.39 6.23 -52.48 -0.33 2.06 16 33 H 0.40 3.53 8.82 -40.82 -0.36 3.17 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -33.92 387.22 -9.97 -43.89 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.46 Total: 7.76 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -5.79 Total: -22.19 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.39 Total: -37.28 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.07 Total: -13.52 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.92 -9.97 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014940823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.668 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds