Wall clock time and date at job start Tue Mar 31 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86804 * 120.00040 * 2 1 4 4 H 1.48493 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46981 * 299.99970 * 3 2 1 6 6 H 1.48494 * 109.46958 * 59.99765 * 3 2 1 7 7 C 1.39863 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00119 * 161.43848 * 7 2 1 9 9 C 1.41132 * 119.99835 * 341.44243 * 7 2 1 10 10 C 1.40887 * 120.15669 * 155.00292 * 9 7 2 11 11 C 1.36342 * 119.83774 * 179.74141 * 10 9 7 12 12 C 1.39565 * 120.16062 * 0.53133 * 11 10 9 13 13 N 1.38856 * 119.84136 * 179.76142 * 12 11 10 14 14 C 1.46503 * 119.99965 * 359.97438 * 13 12 11 15 15 H 1.09000 * 109.46873 * 324.99654 * 14 13 12 16 16 C 1.50696 * 109.47288 * 85.00042 * 14 13 12 17 17 O 1.21283 * 119.99819 * 28.11803 * 16 14 13 18 18 N 1.34779 * 120.00102 * 208.11704 * 16 14 13 19 19 C 1.47016 * 125.64642 * 4.50523 * 18 16 14 20 20 C 1.54313 * 107.27802 * 180.96631 * 19 18 16 21 21 C 1.55164 * 102.86013 * 22.53055 * 20 19 18 22 22 C 1.47424 * 125.64818 * 184.81787 * 18 16 14 23 23 C 1.50704 * 109.46638 * 204.99956 * 14 13 12 24 24 C 1.38236 * 120.00158 * 314.40852 * 23 14 13 25 25 C 1.38235 * 119.99834 * 179.79256 * 24 23 14 26 26 C 1.38234 * 119.99897 * 0.43918 * 25 24 23 27 27 C 1.38239 * 120.00257 * 359.81716 * 26 25 24 28 28 C 1.38232 * 119.99670 * 359.97287 * 27 26 25 29 29 C 1.39560 * 120.31456 * 359.74066 * 12 11 10 30 30 C 1.36336 * 120.16458 * 359.97438 * 29 12 11 31 31 H 0.96999 * 119.99358 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.08207 * 0.02562 * 10 9 7 33 33 H 1.08004 * 119.91979 * 180.24961 * 11 10 9 34 34 H 0.97005 * 119.99883 * 179.97438 * 13 12 11 35 35 H 1.09003 * 109.88696 * 300.51878 * 19 18 16 36 36 H 1.09001 * 109.88286 * 61.68146 * 19 18 16 37 37 H 1.08996 * 110.93428 * 264.11802 * 20 19 18 38 38 H 1.09005 * 110.59045 * 140.78526 * 20 19 18 39 39 H 1.08995 * 111.00470 * 206.22614 * 21 20 19 40 40 H 1.09006 * 111.00541 * 82.37395 * 21 20 19 41 41 H 1.09003 * 110.36679 * 274.67146 * 22 18 16 42 42 H 1.09003 * 110.36791 * 36.88538 * 22 18 16 43 43 H 1.07999 * 119.99732 * 0.02562 * 24 23 14 44 44 H 1.07996 * 120.00178 * 180.27612 * 25 24 23 45 45 H 1.08000 * 120.00260 * 179.83575 * 26 25 24 46 46 H 1.08001 * 120.00282 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99566 * 179.97438 * 28 27 26 48 48 H 1.08004 * 119.92188 * 180.02562 * 29 12 11 49 49 H 1.08003 * 120.08665 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8843 2.3964 1.2124 7 6 2.0084 -1.2113 0.0005 8 1 3.0462 -1.2358 -0.2972 9 6 1.3577 -2.4015 0.3901 10 6 1.8208 -3.6471 -0.0780 11 6 1.1905 -4.7932 0.3067 12 6 0.0824 -4.7340 1.1531 13 7 -0.5575 -5.9051 1.5367 14 6 -0.0695 -7.1988 1.0526 15 1 0.3056 -7.0880 0.0352 16 6 1.0417 -7.6834 1.9477 17 8 1.0718 -7.3479 3.1128 18 7 2.0021 -8.4897 1.4536 19 6 2.1397 -8.8963 0.0475 20 6 3.3611 -9.8352 -0.0406 21 6 3.4978 -10.3615 1.4126 22 6 3.0846 -9.1153 2.2348 23 6 -1.1974 -8.1981 1.0661 24 6 -2.0265 -8.2898 2.1684 25 6 -3.0638 -9.2035 2.1790 26 6 -3.2664 -10.0317 1.0910 27 6 -2.4341 -9.9437 -0.0092 28 6 -1.3995 -9.0271 -0.0215 29 6 -0.3854 -3.5033 1.6160 30 6 0.2385 -2.3494 1.2443 31 1 -0.4849 0.8401 -0.0004 32 1 2.6757 -3.6942 -0.7362 33 1 1.5468 -5.7491 -0.0481 34 1 -1.3277 -5.8666 2.1252 35 1 1.2414 -9.4220 -0.2761 36 1 2.3035 -8.0186 -0.5778 37 1 4.2544 -9.2855 -0.3372 38 1 3.1649 -10.6557 -0.7310 39 1 4.5267 -10.6488 1.6290 40 1 2.8156 -11.1923 1.5931 41 1 3.9263 -8.4297 2.3333 42 1 2.7203 -9.4114 3.2185 43 1 -1.8661 -7.6450 3.0198 44 1 -3.7143 -9.2721 3.0384 45 1 -4.0752 -10.7474 1.1003 46 1 -2.5921 -10.5911 -0.8591 47 1 -0.7490 -8.9586 -0.8810 48 1 -1.2432 -3.4648 2.2711 49 1 -0.1243 -1.3978 1.6037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015499456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:11 Heat of formation + Delta-G solvation = 22.968041 kcal Electronic energy + Delta-G solvation = -30626.711527 eV Core-core repulsion = 26711.139495 eV Total energy + Delta-G solvation = -3915.572032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 350.174 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.47147 -39.02719 -37.93267 -37.15368 -35.07206 -33.26461 -31.88745 -31.18099 -30.99462 -29.57544 -29.18462 -28.48626 -26.58402 -24.33177 -23.49171 -22.64522 -21.93430 -21.34408 -20.75365 -20.28271 -18.99597 -17.47954 -17.33923 -16.93493 -16.46985 -15.96741 -15.74200 -15.26529 -15.00869 -14.95392 -14.17320 -14.13164 -13.73546 -13.68888 -13.52040 -13.44565 -13.04085 -12.85356 -12.72075 -12.56202 -12.34230 -12.29754 -11.95997 -11.73322 -11.58980 -11.48029 -11.39741 -11.21711 -11.09485 -10.96856 -10.92005 -10.84954 -10.51583 -10.00255 -9.70039 -9.32034 -9.23874 -9.04079 -8.82375 -8.58421 -8.52236 -7.48908 -6.66045 -6.42533 -4.03705 1.15880 1.27930 2.80357 2.87867 3.01982 3.10871 3.16333 3.21783 3.36805 3.63918 4.06120 4.19676 4.36592 4.42171 4.62865 4.70931 4.75053 4.75948 4.85127 4.98802 5.01613 5.08908 5.19949 5.27339 5.37703 5.44022 5.50387 5.51834 5.62709 5.71468 5.77487 5.81394 5.83764 5.91729 5.94916 6.21329 6.28554 6.29649 6.32483 6.37745 6.44892 6.81702 6.84379 7.03550 7.18447 7.29190 7.51350 7.60554 7.65614 7.77601 8.15311 8.29883 8.35946 8.46129 8.61910 8.78203 9.06040 9.14414 10.37047 Molecular weight = 350.17amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.002939 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.768088 B = 9523.899257 C =11028.751439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.189 4.189 11 C -0.157 4.157 12 C 0.090 3.910 13 N -0.730 5.730 14 C 0.195 3.805 15 H 0.098 0.902 16 C 0.520 3.480 17 O -0.524 6.524 18 N -0.621 5.621 19 C 0.094 3.906 20 C -0.131 4.131 21 C -0.133 4.133 22 C 0.105 3.895 23 C -0.081 4.081 24 C -0.100 4.100 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.106 4.106 29 C -0.154 4.154 30 C -0.122 4.122 31 H 0.276 0.724 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.391 0.609 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.088 0.912 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 -21.856 -0.671 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.209 4.209 11 C -0.179 4.179 12 C -0.006 4.006 13 N -0.365 5.365 14 C 0.084 3.916 15 H 0.115 0.885 16 C 0.306 3.694 17 O -0.398 6.398 18 N -0.358 5.358 19 C -0.029 4.029 20 C -0.169 4.169 21 C -0.171 4.171 22 C -0.018 4.018 23 C -0.083 4.083 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.124 4.124 29 C -0.176 4.176 30 C -0.142 4.142 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.226 0.774 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.107 0.893 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.283 -21.486 -0.111 21.525 hybrid contribution 0.135 0.813 0.120 0.833 sum -1.148 -20.673 0.009 20.705 Atomic orbital electron populations 1.69870 1.07374 1.28582 1.37417 1.25802 0.94647 1.00909 0.92654 0.86375 0.81029 0.81590 0.78330 1.18624 1.20264 1.19935 1.19390 0.98186 0.91436 1.40729 0.90882 1.17494 0.92251 0.91979 0.90710 1.20511 1.02920 0.92602 1.04859 1.19788 0.98125 0.96802 1.03183 1.17301 0.96390 0.84900 1.02009 1.43624 1.35236 1.00553 1.57056 1.19281 0.90073 0.84614 0.97667 0.88476 1.21437 0.82038 0.76845 0.89047 1.90663 1.75954 1.55215 1.17930 1.48582 1.28813 1.49174 1.09240 1.22128 0.98820 0.98672 0.83262 1.22628 0.97966 0.98944 0.97323 1.22779 1.02158 0.97253 0.94879 1.22181 0.90219 0.93632 0.95783 1.19671 0.96551 0.96963 0.95070 1.21080 0.94662 0.98238 0.97897 1.21142 0.97812 0.96028 0.98642 1.21171 0.99429 0.99298 0.93859 1.21091 0.95460 0.98790 0.98452 1.21017 0.98207 0.95634 0.97546 1.20004 1.01618 0.91637 1.04303 1.20906 0.98172 0.96346 0.98769 0.91334 0.89113 0.90093 0.77404 0.91338 0.91080 0.90292 0.90017 0.89905 0.90736 0.91544 0.90767 0.85590 0.85913 0.86100 0.85864 0.85791 0.89348 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.53 11.01 55.54 0.61 -20.91 16 2 C 0.08 1.96 5.12 -17.34 -0.09 1.87 16 3 Si 0.90 19.42 29.60 -169.99 -5.03 14.39 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.47 -12.81 9.03 -37.88 -0.34 -13.16 16 8 H 0.07 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.08 2.16 5.57 -106.79 -0.59 1.56 16 10 C -0.19 -4.75 9.74 -39.26 -0.38 -5.14 16 11 C -0.16 -3.62 9.07 -39.77 -0.36 -3.98 16 12 C 0.09 2.05 6.64 -83.69 -0.56 1.49 16 13 N -0.73 -13.81 4.82 -54.29 -0.26 -14.07 16 14 C 0.20 3.13 1.86 -70.23 -0.13 2.99 16 15 H 0.10 1.52 5.31 -51.93 -0.28 1.24 16 16 C 0.52 8.93 6.76 -10.99 -0.07 8.85 16 17 O -0.52 -10.99 16.95 5.55 0.09 -10.89 16 18 N -0.62 -8.51 3.33 -170.53 -0.57 -9.07 16 19 C 0.09 0.95 6.06 -3.07 -0.02 0.94 16 20 C -0.13 -0.97 6.95 -24.90 -0.17 -1.15 16 21 C -0.13 -1.04 7.08 -24.58 -0.17 -1.21 16 22 C 0.10 1.23 6.89 -2.53 -0.02 1.21 16 23 C -0.08 -1.10 4.93 -104.62 -0.52 -1.62 16 24 C -0.10 -1.32 8.94 -39.58 -0.35 -1.67 16 25 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 28 C -0.11 -1.17 9.03 -39.58 -0.36 -1.53 16 29 C -0.15 -3.73 9.82 -39.77 -0.39 -4.12 16 30 C -0.12 -3.27 8.64 -39.26 -0.34 -3.61 16 31 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 32 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 33 H 0.08 1.65 6.14 -52.48 -0.32 1.33 16 34 H 0.39 6.97 7.20 -40.82 -0.29 6.68 16 35 H 0.07 0.60 6.65 -51.93 -0.35 0.26 16 36 H 0.07 0.75 7.98 -51.93 -0.41 0.34 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.13 1.74 7.27 -52.49 -0.38 1.36 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.12 1.14 7.22 -52.49 -0.38 0.76 16 48 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 49 H 0.12 3.28 6.19 -52.48 -0.33 2.96 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -32.59 398.54 -12.15 -44.73 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -6.93 Total: 12.86 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -6.06 Total: -23.04 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.22 Total: -44.06 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.59 -12.15 -44.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015499456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.703 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds