Wall clock time and date at job start Tue Mar 31 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99826 * 2 1 4 4 H 1.48503 * 109.47436 * 269.99877 * 3 2 1 5 5 H 1.48497 * 109.47109 * 30.00353 * 3 2 1 6 6 H 1.48500 * 109.47049 * 150.00043 * 3 2 1 7 7 C 1.37872 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00658 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00009 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47095 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99584 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00321 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99508 * 180.02562 * 11 10 9 14 14 S 1.81007 * 109.46709 * 180.02562 * 13 11 10 15 15 C 1.76197 * 99.99746 * 180.02562 * 14 13 11 16 16 N 1.31280 * 125.82209 * 0.14931 * 15 14 13 17 17 C 1.34376 * 109.35864 * 180.30882 * 16 15 14 18 18 C 1.34402 * 108.40097 * 359.73023 * 17 16 15 19 19 N 1.36373 * 125.82324 * 180.02562 * 15 14 13 20 20 C 1.40244 * 126.53159 * 359.95113 * 19 15 14 21 21 C 1.38826 * 120.05126 * 129.71575 * 20 19 15 22 22 C 1.38111 * 119.94729 * 180.02562 * 21 20 19 23 23 C 1.38391 * 120.05242 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 119.94535 * 179.97438 * 23 22 21 25 25 C 1.38384 * 120.10265 * 0.25969 * 23 22 21 26 26 C 1.38112 * 120.05270 * 359.48319 * 25 23 22 27 27 H 0.96999 * 120.00180 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46861 * 60.00224 * 9 7 2 29 29 H 1.09000 * 109.47143 * 300.00260 * 9 7 2 30 30 H 0.96997 * 119.99754 * 0.02562 * 10 9 7 31 31 H 1.08997 * 109.47430 * 59.99978 * 13 11 10 32 32 H 1.09000 * 109.47067 * 299.99712 * 13 11 10 33 33 H 1.07994 * 125.80405 * 179.73136 * 17 16 15 34 34 H 1.07993 * 126.52575 * 179.97438 * 18 17 16 35 35 H 1.07999 * 120.02601 * 0.02562 * 21 20 19 36 36 H 1.07992 * 119.97537 * 180.02562 * 22 21 20 37 37 H 1.08002 * 119.96777 * 179.74773 * 25 23 22 38 38 H 1.07997 * 120.02549 * 180.27855 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5615 -5.1050 -0.0020 13 6 2.7332 -6.0288 -0.0005 14 16 1.8281 -7.5963 -0.0021 15 6 3.1779 -8.7289 -0.0004 16 7 4.4507 -8.4073 0.0044 17 6 5.1932 -9.5273 -0.0026 18 6 4.3646 -10.5855 -0.0060 19 7 3.0786 -10.0890 -0.0013 20 6 1.8939 -10.8395 -0.0029 21 6 1.7185 -11.8596 -0.9280 22 6 0.5507 -12.5971 -0.9279 23 6 -0.4443 -12.3195 -0.0070 24 17 -1.9112 -13.2477 -0.0098 25 6 -0.2740 -11.2992 0.9123 26 6 0.8942 -10.5625 0.9196 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 3.1567 -3.4354 -0.0002 31 1 3.3592 -5.9712 0.8900 32 1 3.3605 -5.9709 -0.8900 33 1 6.2722 -9.5700 -0.0050 34 1 4.6516 -11.6266 -0.0120 35 1 2.4945 -12.0764 -1.6471 36 1 0.4139 -13.3910 -1.6471 37 1 -1.0536 -11.0817 1.6274 38 1 1.0284 -9.7693 1.6402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016116582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:43 Heat of formation + Delta-G solvation = 47.423321 kcal Electronic energy + Delta-G solvation = -24002.643689 eV Core-core repulsion = 20191.360039 eV Total energy + Delta-G solvation = -3811.283650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 351.055 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36212 -39.65960 -38.85135 -37.00431 -34.30630 -34.26406 -32.43292 -31.81085 -30.40618 -29.71505 -29.36876 -26.83344 -23.90704 -23.67808 -22.70558 -21.68150 -21.36553 -19.92873 -19.14738 -17.45633 -17.04187 -16.50143 -16.25437 -15.81346 -15.32678 -15.29683 -15.05948 -14.93019 -14.43399 -14.20330 -14.17187 -14.07050 -13.92458 -13.49030 -12.93193 -12.81170 -12.65395 -12.26338 -12.06968 -12.00312 -11.67215 -11.35893 -11.01352 -10.90551 -10.65827 -10.54799 -10.36404 -10.31794 -9.69577 -9.61735 -9.44250 -9.32357 -8.98366 -8.78448 -8.00549 -7.49870 -6.19388 -4.26681 0.27603 0.64663 1.05395 1.59925 1.64511 2.05668 2.45828 2.77296 2.95873 3.15607 3.23540 3.29740 3.32134 3.95832 4.16704 4.24041 4.33510 4.40206 4.60171 4.67997 4.95291 5.01160 5.16615 5.20486 5.21579 5.29549 5.32449 5.38864 5.51329 5.53413 5.62366 5.90111 5.99384 6.37839 6.73248 7.21900 7.29452 7.45633 7.57644 7.60234 7.92099 8.48377 8.68984 8.94342 9.39676 10.90742 Molecular weight = 351.05amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002037 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.481091 B =13744.886487 C =15397.146229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.702 5.702 11 C 0.515 3.485 12 O -0.543 6.543 13 C -0.139 4.139 14 S 0.063 5.937 15 C 0.190 3.810 16 N -0.485 5.485 17 C -0.010 4.010 18 C -0.049 4.049 19 N -0.406 5.406 20 C 0.123 3.877 21 C -0.100 4.100 22 C -0.095 4.095 23 C -0.031 4.031 24 Cl -0.060 7.060 25 C -0.088 4.088 26 C -0.095 4.095 27 H 0.266 0.734 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.394 0.606 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -29.126 0.093 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.350 5.350 11 C 0.297 3.703 12 O -0.423 6.423 13 C -0.291 4.291 14 S 0.293 5.707 15 C -0.179 4.179 16 N -0.207 5.207 17 C -0.158 4.158 18 C -0.181 4.181 19 N -0.089 5.089 20 C 0.032 3.968 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.058 4.058 24 Cl -0.031 7.031 25 C -0.107 4.107 26 C -0.115 4.115 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.227 0.773 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.194 0.806 34 H 0.197 0.803 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.335 -28.612 0.104 28.806 hybrid contribution 2.080 0.290 -0.048 2.101 sum 5.415 -28.322 0.055 28.835 Atomic orbital electron populations 1.69970 1.06111 1.27399 1.48727 1.24950 0.94935 0.99493 0.94623 0.86393 0.79619 0.82528 0.78257 1.20425 1.20984 1.19709 1.21211 0.93344 0.90314 1.53449 0.91759 1.19192 0.88201 0.81653 0.98020 1.46384 1.11572 1.05463 1.71581 1.19528 0.88484 0.83965 0.78284 1.90705 1.16182 1.84323 1.51071 1.23768 1.02439 0.94045 1.08891 1.86288 0.98180 0.93727 1.92509 1.26052 0.98826 0.85172 1.07864 1.70874 0.99232 1.29425 1.21171 1.22367 0.99874 0.87571 1.05982 1.22877 0.81823 1.00823 1.12571 1.42944 1.04935 1.05001 1.56043 1.17781 0.86530 0.94982 0.97512 1.21013 0.98202 0.95292 0.97452 1.20938 0.91858 1.00278 0.98340 1.21061 0.89571 0.96178 0.98951 1.98397 1.34458 1.72246 1.98034 1.21007 0.97641 0.93685 0.98395 1.21173 0.92489 1.00159 0.97711 0.92382 0.95232 0.95234 0.77260 0.86202 0.86243 0.80598 0.80347 0.84193 0.83839 0.83506 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 10 N -0.70 -14.48 5.55 -61.47 -0.34 -14.83 16 11 C 0.52 10.10 7.85 -10.98 -0.09 10.01 16 12 O -0.54 -12.70 15.86 5.56 0.09 -12.61 16 13 C -0.14 -2.09 5.68 36.01 0.20 -1.89 16 14 S 0.06 0.92 19.78 -107.50 -2.13 -1.20 16 15 C 0.19 2.55 7.81 -88.50 -0.69 1.85 16 16 N -0.49 -6.63 10.60 -13.38 -0.14 -6.77 16 17 C -0.01 -0.10 11.84 -17.79 -0.21 -0.31 16 18 C -0.05 -0.45 11.32 -16.20 -0.18 -0.64 16 19 N -0.41 -4.52 2.91 -60.73 -0.18 -4.69 16 20 C 0.12 1.20 5.86 -83.57 -0.49 0.71 16 21 C -0.10 -0.76 9.70 -39.41 -0.38 -1.14 16 22 C -0.09 -0.65 9.82 -39.57 -0.39 -1.04 16 23 C -0.03 -0.24 6.32 -39.47 -0.25 -0.49 16 24 Cl -0.06 -0.45 28.95 -51.86 -1.50 -1.95 16 25 C -0.09 -0.71 9.82 -39.57 -0.39 -1.10 16 26 C -0.10 -0.90 8.87 -39.41 -0.35 -1.25 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 31 H 0.12 1.62 8.14 -51.92 -0.42 1.20 16 32 H 0.12 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.18 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 1.42 7.58 -52.49 -0.40 1.02 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -33.16 367.51 -10.68 -43.84 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.08 Total: 4.13 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.66 Total: -2.05 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.08 Total: -51.39 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.13 Total: -1.20 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.16 -10.68 -43.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016116582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.261 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds