Wall clock time and date at job start Tue Mar 31 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99912 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99770 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00111 * 3 2 1 7 7 C 1.40050 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.39613 * 119.99695 * 0.28244 * 7 2 1 10 10 N 1.31488 * 125.09603 * 179.72634 * 9 7 2 11 11 C 1.30954 * 117.23115 * 179.97438 * 10 9 7 12 12 C 1.47972 * 122.61005 * 179.97438 * 11 10 9 13 13 C 1.39594 * 120.14142 * 144.74920 * 12 11 10 14 14 C 1.37950 * 119.85143 * 179.69874 * 13 12 11 15 15 C 1.38377 * 120.14372 * 0.60019 * 14 13 12 16 16 C 1.38391 * 120.29225 * 359.67671 * 15 14 13 17 17 C 1.37942 * 120.14340 * 0.02562 * 16 15 14 18 18 C 1.38824 * 114.77844 * 359.97438 * 11 10 9 19 19 N 1.37936 * 125.99869 * 179.97438 * 18 11 10 20 20 C 1.34774 * 119.99993 * 180.02562 * 19 18 11 21 21 O 1.21564 * 120.00311 * 359.97438 * 20 19 18 22 22 C 1.47774 * 120.00181 * 180.02562 * 20 19 18 23 23 C 1.39624 * 120.14445 * 359.72211 * 22 20 19 24 24 C 1.37948 * 119.84801 * 179.74251 * 23 22 20 25 25 C 1.38373 * 120.14435 * 0.51300 * 24 23 22 26 26 C 1.38365 * 120.30128 * 359.76068 * 25 24 23 27 27 C 1.37938 * 120.15129 * 359.97438 * 26 25 24 28 28 S 1.76034 * 125.10119 * 359.41398 * 9 7 2 29 29 H 0.96996 * 120.00421 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.07907 * 359.97438 * 13 12 11 31 31 H 1.08003 * 119.92509 * 180.31800 * 14 13 12 32 32 H 1.07999 * 119.85563 * 179.69688 * 15 14 13 33 33 H 1.07998 * 119.92779 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.07204 * 180.02562 * 17 16 15 35 35 H 0.97004 * 119.99809 * 0.02562 * 19 18 11 36 36 H 1.08005 * 120.07653 * 0.02562 * 23 22 20 37 37 H 1.07996 * 119.92692 * 180.25095 * 24 23 22 38 38 H 1.07995 * 119.84531 * 179.73901 * 25 24 23 39 39 H 1.08004 * 119.92005 * 179.97438 * 26 25 24 40 40 H 1.08008 * 120.07626 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0085 -1.2128 0.0005 8 1 3.0886 -1.2128 0.0001 9 6 1.3105 -2.4219 -0.0049 10 7 1.8642 -3.6145 -0.0101 11 6 1.0604 -4.6483 -0.0142 12 6 1.5549 -6.0430 -0.0208 13 6 0.8605 -7.0362 0.6719 14 6 1.3235 -8.3356 0.6567 15 6 2.4803 -8.6530 -0.0331 16 6 3.1767 -7.6720 -0.7171 17 6 2.7211 -6.3699 -0.7149 18 6 -0.2918 -4.3340 -0.0119 19 7 -1.3342 -5.2374 -0.0158 20 6 -2.6078 -4.7967 -0.0135 21 8 -2.8381 -3.6031 -0.0075 22 6 -3.7246 -5.7645 -0.0171 23 6 -3.4637 -7.1361 -0.0288 24 6 -4.5108 -8.0342 -0.0267 25 6 -5.8173 -7.5783 -0.0239 26 6 -6.0828 -6.2203 -0.0180 27 6 -5.0452 -5.3115 -0.0145 28 16 -0.4429 -2.5785 0.0021 29 1 -0.4850 0.8400 -0.0004 30 1 -0.0397 -6.7889 1.2150 31 1 0.7843 -9.1060 1.1880 32 1 2.8413 -9.6709 -0.0379 33 1 4.0787 -7.9263 -1.2538 34 1 3.2652 -5.6053 -1.2494 35 1 -1.1505 -6.1899 -0.0203 36 1 -2.4444 -7.4932 -0.0348 37 1 -4.3105 -9.0954 -0.0317 38 1 -6.6334 -8.2856 -0.0265 39 1 -7.1049 -5.8713 -0.0162 40 1 -5.2538 -4.2518 -0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019898554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:18 Heat of formation + Delta-G solvation = 42.728042 kcal Electronic energy + Delta-G solvation = -26705.085297 eV Core-core repulsion = 22961.456805 eV Total energy + Delta-G solvation = -3743.628492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 350.083 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.06848 -38.97070 -38.05312 -37.00264 -34.58270 -33.77141 -31.39664 -30.99713 -30.83625 -30.54267 -28.27818 -26.03624 -23.99361 -22.99711 -22.45521 -22.09595 -21.33575 -20.37125 -19.22083 -18.03186 -17.49853 -16.48489 -16.22246 -15.93060 -15.33197 -15.18141 -14.84848 -14.70373 -14.41032 -14.11491 -14.01567 -13.66589 -13.46327 -13.11923 -12.87384 -12.84909 -12.71469 -12.54495 -12.12007 -11.79056 -11.70469 -11.41277 -11.17729 -11.04445 -10.83954 -10.71175 -10.52152 -10.26326 -9.79338 -9.54127 -9.18284 -9.10083 -9.01850 -8.63421 -8.56932 -7.61375 -7.18193 -7.07808 -6.91742 -4.61090 0.82777 1.27370 1.53156 1.74461 2.43846 2.92718 2.93873 3.00877 3.11553 3.24667 3.61529 3.75704 3.85566 3.98837 4.04865 4.40057 4.72558 4.80244 4.83808 5.09337 5.16076 5.22869 5.26454 5.28414 5.30260 5.42894 5.53476 5.72076 5.80385 5.88243 5.91383 6.24677 6.29376 6.31469 6.33018 6.35897 6.59492 6.66532 6.79018 6.81656 6.83091 7.00099 7.15536 7.33042 7.50970 7.85215 7.95032 8.31201 8.36015 8.70933 9.70322 9.81875 Molecular weight = 350.08amu Principal moments of inertia in cm(-1) A = 0.008401 B = 0.004183 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.242435 B = 6692.300211 C = 9920.286276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.052 3.948 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.367 4.367 8 H 0.102 0.898 9 C 0.168 3.832 10 N -0.579 5.579 11 C 0.103 3.897 12 C 0.021 3.979 13 C -0.137 4.137 14 C -0.119 4.119 15 C -0.140 4.140 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.187 4.187 19 N -0.597 5.597 20 C 0.521 3.479 21 O -0.511 6.511 22 C -0.116 4.116 23 C -0.093 4.093 24 C -0.127 4.127 25 C -0.104 4.104 26 C -0.128 4.128 27 C -0.062 4.062 28 S 0.213 5.787 29 H 0.301 0.699 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.397 0.603 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -12.515 -0.253 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.410 4.410 8 H 0.120 0.880 9 C -0.086 4.086 10 N -0.300 5.300 11 C -0.038 4.038 12 C 0.018 3.982 13 C -0.156 4.156 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.138 4.138 17 C -0.115 4.115 18 C -0.406 4.406 19 N -0.241 5.241 20 C 0.308 3.692 21 O -0.388 6.388 22 C -0.119 4.119 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.122 4.122 26 C -0.146 4.146 27 C -0.081 4.081 28 S 0.471 5.529 29 H 0.114 0.886 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.236 0.764 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.277 -10.765 -0.234 12.996 hybrid contribution 0.691 -0.854 0.011 1.099 sum -6.587 -11.619 -0.224 13.358 Atomic orbital electron populations 1.68583 1.07620 1.30998 1.33855 1.26188 0.95066 1.02756 0.92950 0.85684 0.79943 0.78122 0.79605 1.18932 1.19721 1.18056 1.18904 0.95800 0.87389 1.38874 0.87998 1.23902 0.94192 0.93720 0.96753 1.66818 1.35211 0.96672 1.31282 1.18548 0.86467 0.92159 1.06656 1.18483 0.93850 0.91014 0.94823 1.21192 1.00862 0.92893 1.00699 1.20927 0.96965 0.95867 0.99931 1.21041 0.96303 0.98924 0.99569 1.21077 0.99722 0.93192 0.99777 1.21334 0.95598 0.95959 0.98631 1.24495 0.89332 0.99591 1.27217 1.42065 1.03805 1.08687 1.69542 1.18307 0.82660 0.88642 0.79569 1.90755 1.82977 1.15720 1.49364 1.19996 0.94103 0.93200 1.04593 1.21365 0.99544 0.92279 0.98034 1.21072 0.92561 0.99667 1.01155 1.21325 0.96773 0.95789 0.98314 1.21150 0.99192 0.93135 1.01114 1.21330 0.90882 1.00951 0.94976 1.86436 1.05576 0.88463 1.72440 0.88562 0.86588 0.86484 0.86737 0.86461 0.85454 0.76444 0.85875 0.85517 0.85784 0.85433 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.24 10.60 55.55 0.59 -18.65 16 2 C 0.05 1.23 5.50 -17.30 -0.10 1.14 16 3 Si 0.94 17.66 29.56 -169.99 -5.03 12.64 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 7 C -0.37 -9.52 9.42 -38.39 -0.36 -9.88 16 8 H 0.10 2.54 7.85 -52.49 -0.41 2.13 16 9 C 0.17 4.59 7.10 -17.19 -0.12 4.47 16 10 N -0.58 -15.44 10.39 -9.32 -0.10 -15.53 16 11 C 0.10 2.51 6.43 -84.04 -0.54 1.97 16 12 C 0.02 0.42 5.75 -104.90 -0.60 -0.18 16 13 C -0.14 -2.30 8.27 -39.18 -0.32 -2.62 16 14 C -0.12 -1.63 10.03 -39.64 -0.40 -2.03 16 15 C -0.14 -1.86 10.04 -39.47 -0.40 -2.26 16 16 C -0.12 -1.77 10.03 -39.63 -0.40 -2.17 16 17 C -0.10 -1.77 9.66 -39.18 -0.38 -2.15 16 18 C -0.19 -4.50 7.10 -14.59 -0.10 -4.61 16 19 N -0.60 -11.97 4.88 -10.89 -0.05 -12.03 16 20 C 0.52 10.41 7.73 -12.36 -0.10 10.31 16 21 O -0.51 -12.02 13.91 5.31 0.07 -11.94 16 22 C -0.12 -1.79 5.87 -104.97 -0.62 -2.41 16 23 C -0.09 -1.16 9.54 -39.17 -0.37 -1.54 16 24 C -0.13 -1.27 10.03 -39.64 -0.40 -1.67 16 25 C -0.10 -0.98 10.04 -39.49 -0.40 -1.38 16 26 C -0.13 -1.36 10.03 -39.64 -0.40 -1.76 16 27 C -0.06 -0.86 9.60 -39.18 -0.38 -1.24 16 28 S 0.21 5.64 17.47 -107.50 -1.88 3.77 16 29 H 0.30 6.68 8.30 -40.82 -0.34 6.34 16 30 H 0.12 1.88 6.28 -52.49 -0.33 1.55 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 32 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.13 2.45 8.05 -52.49 -0.42 2.03 16 35 H 0.40 6.71 3.82 -40.82 -0.16 6.55 16 36 H 0.12 1.37 6.41 -52.48 -0.34 1.03 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.14 1.96 7.65 -52.48 -0.40 1.56 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -31.35 357.00 -11.11 -42.47 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -3.73 Total: 11.91 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -6.37 Total: -18.00 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.44 Total: -46.22 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.88 Total: 3.77 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.35 -11.11 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019898554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.194 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds