Wall clock time and date at job start Tue Mar 31 2020 05:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47477 * 269.99865 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00232 * 3 2 1 6 6 H 1.48510 * 109.47026 * 149.99971 * 3 2 1 7 7 C 1.37878 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00207 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99694 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47092 * 176.35518 * 9 7 2 11 11 C 1.46900 * 110.99752 * 58.90830 * 10 9 7 12 12 C 1.50702 * 109.47406 * 71.16494 * 11 10 9 13 13 C 1.38236 * 119.99972 * 263.72348 * 12 11 10 14 14 C 1.38234 * 119.99488 * 179.76563 * 13 12 11 15 15 C 1.38234 * 120.00234 * 0.49941 * 14 13 12 16 16 C 1.38227 * 119.99936 * 359.75297 * 15 14 13 17 17 C 1.38233 * 120.00155 * 359.97438 * 16 15 14 18 18 C 1.46894 * 110.99934 * 294.95520 * 10 9 7 19 19 N 1.46498 * 109.47390 * 278.95493 * 18 10 9 20 20 C 1.34530 * 124.45727 * 269.70064 * 19 18 10 21 21 O 1.21442 * 125.71209 * 0.03637 * 20 19 18 22 22 C 1.47816 * 108.57938 * 179.90412 * 20 19 18 23 23 C 1.38561 * 134.30031 * 180.10293 * 22 20 19 24 24 C 1.38609 * 119.71986 * 180.27371 * 23 22 20 25 25 C 1.38223 * 120.46257 * 0.02562 * 24 23 22 26 26 C 1.38611 * 120.46035 * 359.96056 * 25 24 23 27 27 C 1.38571 * 119.71630 * 0.04208 * 26 25 24 28 28 C 1.34525 * 124.46328 * 89.99946 * 19 18 10 29 29 O 1.21446 * 125.70633 * 359.93977 * 28 19 18 30 30 H 0.97009 * 119.99483 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47320 * 56.35489 * 9 7 2 32 32 H 1.09003 * 109.47236 * 296.35321 * 9 7 2 33 33 H 1.08999 * 109.47094 * 191.16528 * 11 10 9 34 34 H 1.08998 * 109.47588 * 311.16481 * 11 10 9 35 35 H 1.08001 * 120.00040 * 359.97438 * 13 12 11 36 36 H 1.08004 * 119.99237 * 180.22895 * 14 13 12 37 37 H 1.08006 * 119.99537 * 179.72259 * 15 14 13 38 38 H 1.08006 * 119.99739 * 179.97438 * 16 15 14 39 39 H 1.08001 * 120.00280 * 179.97438 * 17 16 15 40 40 H 1.09001 * 109.47507 * 38.95595 * 18 10 9 41 41 H 1.09002 * 109.47247 * 158.95140 * 18 10 9 42 42 H 1.08004 * 120.14233 * 0.29020 * 23 22 20 43 43 H 1.08001 * 119.76956 * 179.97438 * 24 23 22 44 44 H 1.08006 * 119.77680 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.14426 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5763 0.0897 11 6 3.5093 -3.3821 -1.0358 12 6 4.2043 -2.9532 -2.3024 13 6 3.5982 -2.0447 -3.1498 14 6 4.2380 -1.6476 -4.3090 15 6 5.4792 -2.1670 -4.6261 16 6 6.0829 -3.0794 -3.7813 17 6 5.4457 -3.4722 -2.6192 18 6 3.6306 -3.1848 1.3743 19 7 4.5758 -2.7564 2.4083 20 6 5.7089 -3.4103 2.7218 21 8 6.1045 -4.4332 2.2002 22 6 6.3934 -2.6738 3.8053 23 6 7.5692 -2.8652 4.5129 24 6 7.9315 -1.9628 5.5007 25 6 7.1279 -0.8746 5.7845 26 6 5.9491 -0.6700 5.0847 27 6 5.5741 -1.5639 4.0945 28 6 4.4222 -1.6605 3.1732 29 8 3.4928 -0.8809 3.1162 30 1 -0.4850 0.8402 0.0004 31 1 3.8745 -0.6245 0.8567 32 1 3.8752 -0.7381 -0.9197 33 1 3.7164 -4.4353 -0.8465 34 1 2.4345 -3.2370 -1.1443 35 1 2.6264 -1.6425 -2.9044 36 1 3.7660 -0.9350 -4.9692 37 1 5.9770 -1.8601 -5.5342 38 1 7.0526 -3.4855 -4.0293 39 1 5.9172 -4.1855 -1.9594 40 1 2.6240 -2.8692 1.6490 41 1 3.6587 -4.2706 1.2836 42 1 8.2009 -3.7139 4.2955 43 1 8.8476 -2.1115 6.0530 44 1 7.4207 -0.1786 6.5568 45 1 5.3253 0.1823 5.3104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020230644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:25 Heat of formation + Delta-G solvation = 30.617937 kcal Electronic energy + Delta-G solvation = -30788.014562 eV Core-core repulsion = 26736.941160 eV Total energy + Delta-G solvation = -4051.073402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.02923 -39.01404 -38.45452 -38.26610 -36.59878 -35.25327 -32.47402 -31.93876 -31.24255 -30.62602 -30.41175 -27.89914 -26.35490 -24.91204 -24.28653 -22.93530 -22.07288 -22.02902 -21.30438 -19.99374 -19.42801 -17.63551 -17.27655 -16.85124 -16.47465 -16.27944 -16.01492 -15.13690 -14.94419 -14.73734 -14.61328 -14.50354 -14.28802 -14.15098 -14.08546 -13.87354 -13.60945 -12.96084 -12.80702 -12.59300 -12.46708 -12.40254 -12.16237 -11.78286 -11.71437 -11.29406 -11.25545 -11.04468 -10.55635 -10.49020 -10.48065 -10.29650 -9.95867 -9.87021 -9.57787 -9.54676 -9.33911 -9.29230 -8.57267 -8.44344 -8.29463 -7.46488 -6.10458 -4.09825 0.12337 0.85899 1.78137 1.86981 2.12317 2.65687 3.26943 3.30909 3.37820 3.45518 3.54261 3.72026 4.19513 4.43650 4.44886 4.52281 4.70140 4.91172 4.93685 5.10138 5.22721 5.24843 5.29067 5.31129 5.43033 5.50669 5.61778 5.63566 5.80724 5.83868 5.87280 5.96840 5.98652 6.01391 6.09304 6.11753 6.33138 6.44736 6.50046 6.59671 6.80638 6.89146 6.96456 7.00676 7.10427 7.19828 7.46912 7.49611 7.54276 7.78344 7.85625 8.07354 8.39138 8.86784 9.53924 11.01866 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.009034 B = 0.004410 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.803729 B = 6348.084304 C = 8275.209821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.085 3.915 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.150 3.850 10 N -0.544 5.544 11 C 0.098 3.902 12 C -0.060 4.060 13 C -0.096 4.096 14 C -0.129 4.129 15 C -0.130 4.130 16 C -0.133 4.133 17 C -0.103 4.103 18 C 0.278 3.722 19 N -0.559 5.559 20 C 0.578 3.422 21 O -0.471 6.471 22 C -0.138 4.138 23 C -0.050 4.050 24 C -0.104 4.104 25 C -0.100 4.100 26 C -0.052 4.052 27 C -0.131 4.131 28 C 0.561 3.439 29 O -0.428 6.428 30 H 0.263 0.737 31 H 0.033 0.967 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.186 -5.057 6.433 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.119 4.119 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.093 0.907 9 C 0.024 3.976 10 N -0.268 5.268 11 C -0.029 4.029 12 C -0.061 4.061 13 C -0.115 4.115 14 C -0.147 4.147 15 C -0.148 4.148 16 C -0.151 4.151 17 C -0.121 4.121 18 C 0.069 3.931 19 N -0.302 5.302 20 C 0.367 3.633 21 O -0.343 6.343 22 C -0.141 4.141 23 C -0.069 4.069 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.070 4.070 27 C -0.134 4.134 28 C 0.347 3.653 29 O -0.296 6.296 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.151 0.849 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.134 -5.077 6.025 17.062 hybrid contribution -0.419 1.161 -0.034 1.235 sum 14.716 -3.916 5.991 16.364 Atomic orbital electron populations 1.69909 1.06262 1.26966 1.50198 1.24790 0.94495 0.98894 0.93696 0.86882 0.80846 0.84033 0.78242 1.20417 1.21288 1.18862 1.21428 0.90011 0.94511 1.52432 0.90696 1.20349 0.95038 0.84771 0.97457 1.62025 1.59754 1.04858 1.00161 1.20937 0.98906 0.95467 0.87606 1.19775 0.94559 0.96435 0.95321 1.21370 1.00827 0.95848 0.93418 1.21120 0.95593 1.00368 0.97603 1.21023 0.95919 0.98293 0.99581 1.21008 0.99690 0.98964 0.95410 1.21009 0.94653 1.00143 0.96342 1.22130 0.90474 0.97407 0.83121 1.46698 1.23421 1.25420 1.34647 1.18279 0.80141 0.83387 0.81517 1.90748 1.67044 1.21924 1.54560 1.20753 0.97188 0.97301 0.98885 1.20758 0.93856 0.98975 0.93312 1.21385 0.99892 0.94050 0.96902 1.21406 0.93687 0.97644 0.99083 1.20822 0.96013 0.97692 0.92508 1.20820 0.96591 0.97351 0.98687 1.18374 0.85767 0.80662 0.80466 1.90937 1.32610 1.40366 1.65696 0.92718 0.94855 0.95351 0.91502 0.91045 0.84910 0.86631 0.86965 0.86877 0.86482 0.88360 0.89130 0.84321 0.84447 0.84412 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.31 16 3 Si 0.87 22.25 27.54 -169.99 -4.68 17.56 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.75 6.44 56.52 0.36 -6.38 16 7 C -0.55 -14.56 7.70 -34.44 -0.27 -14.83 16 8 H 0.08 2.12 6.36 -52.49 -0.33 1.78 16 9 C 0.15 3.60 3.91 -4.97 -0.02 3.58 16 10 N -0.54 -11.18 4.76 -241.43 -1.15 -12.33 16 11 C 0.10 1.84 4.91 -4.97 -0.02 1.81 16 12 C -0.06 -1.10 4.86 -104.62 -0.51 -1.60 16 13 C -0.10 -1.78 8.57 -39.58 -0.34 -2.12 16 14 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 15 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 16 C -0.13 -1.96 10.05 -39.59 -0.40 -2.35 16 17 C -0.10 -1.69 9.73 -39.58 -0.38 -2.07 16 18 C 0.28 5.34 5.41 -63.32 -0.34 5.00 16 19 N -0.56 -10.22 2.84 -120.91 -0.34 -10.57 16 20 C 0.58 9.66 8.02 -12.45 -0.10 9.56 16 21 O -0.47 -8.53 17.67 5.42 0.10 -8.43 16 22 C -0.14 -1.89 6.40 -104.83 -0.67 -2.57 16 23 C -0.05 -0.51 10.09 -39.33 -0.40 -0.90 16 24 C -0.10 -0.80 10.03 -39.45 -0.40 -1.19 16 25 C -0.10 -0.81 10.03 -39.45 -0.40 -1.20 16 26 C -0.05 -0.58 10.09 -39.32 -0.40 -0.97 16 27 C -0.13 -1.91 6.41 -104.83 -0.67 -2.58 16 28 C 0.56 10.46 7.27 -12.46 -0.09 10.37 16 29 O -0.43 -9.57 16.31 5.41 0.09 -9.48 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.03 0.86 4.63 -51.93 -0.24 0.62 16 32 H 0.03 0.71 6.32 -51.93 -0.33 0.38 16 33 H 0.07 1.10 7.64 -51.93 -0.40 0.70 16 34 H 0.07 1.46 5.94 -51.93 -0.31 1.16 16 35 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 36 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 37 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.10 2.11 6.39 -51.93 -0.33 1.78 16 41 H 0.09 1.54 7.38 -51.93 -0.38 1.15 16 42 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -33.20 378.27 -11.11 -44.31 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.30 Total: 3.84 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -6.29 Total: -4.55 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.72 Total: -48.96 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.18 Total: -17.91 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.68 Total: 17.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.20 -11.11 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020230644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.932 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds