Wall clock time and date at job start Tue Mar 31 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39321 * 119.46234 * 2 1 4 4 C 1.36255 * 120.95284 * 180.27895 * 3 2 1 5 5 C 1.40229 * 119.50664 * 0.02562 * 4 3 2 6 6 C 1.40757 * 122.04466 * 180.02562 * 5 4 3 7 7 C 1.50696 * 120.77197 * 359.95680 * 6 5 4 8 8 N 1.31643 * 118.46020 * 179.97438 * 6 5 4 9 9 C 1.33144 * 121.56579 * 359.97438 * 8 6 5 10 10 N 1.38686 * 118.66835 * 180.02562 * 9 8 6 11 11 C 1.36985 * 120.00550 * 359.97438 * 10 9 8 12 12 N 1.31914 * 118.69922 * 359.72812 * 11 10 9 13 13 C 1.32282 * 122.34152 * 179.74892 * 12 11 10 14 14 C 1.50701 * 120.24673 * 180.29421 * 13 12 11 15 15 C 1.40672 * 119.50504 * 0.51614 * 13 12 11 16 16 C 1.40613 * 121.16256 * 179.73046 * 15 13 12 17 17 H 1.08006 * 119.99847 * 326.29922 * 16 15 13 18 18 C 1.39896 * 120.00633 * 146.28920 * 16 15 13 19 19 N 1.30963 * 119.99915 * 336.74078 * 18 16 15 20 20 Si 1.86797 * 120.00182 * 156.72561 * 18 16 15 21 21 H 1.48504 * 109.46735 * 95.00224 * 20 18 16 22 22 H 1.48496 * 109.47502 * 215.00594 * 20 18 16 23 23 H 1.48504 * 109.47193 * 335.00923 * 20 18 16 24 24 C 1.47450 * 117.68686 * 359.75373 * 15 13 12 25 25 O 1.21756 * 121.09410 * 180.02562 * 24 15 13 26 26 N 1.35158 * 117.81381 * 359.97438 * 24 15 13 27 27 H 0.96997 * 119.97207 * 180.02562 * 26 24 15 28 28 N 1.31810 * 122.65944 * 359.97438 * 9 8 6 29 29 C 1.33872 * 120.21017 * 0.02562 * 28 9 8 30 30 C 1.36243 * 119.46190 * 180.28103 * 2 1 3 31 31 H 1.09004 * 109.46760 * 269.71798 * 1 2 3 32 32 H 1.09003 * 109.47670 * 29.71874 * 1 2 3 33 33 H 1.08999 * 109.47380 * 149.72709 * 1 2 3 34 34 H 1.07994 * 119.52218 * 0.26226 * 3 2 1 35 35 H 1.08002 * 120.24596 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.47220 * 270.02817 * 7 6 5 37 37 H 1.09005 * 109.46669 * 30.02413 * 7 6 5 38 38 H 1.09002 * 109.47134 * 150.01997 * 7 6 5 39 39 H 0.97004 * 120.00045 * 179.97438 * 10 9 8 40 40 H 1.08998 * 109.46661 * 270.22386 * 14 13 12 41 41 H 1.08994 * 109.47312 * 30.22537 * 14 13 12 42 42 H 1.09001 * 109.47070 * 150.23107 * 14 13 12 43 43 H 0.96998 * 120.00106 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.19975 * 359.69891 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1922 1.2130 0.0000 4 6 3.5543 1.2485 -0.0057 5 6 4.2764 0.0465 -0.0122 6 6 5.6838 0.0207 -0.0177 7 6 6.4783 1.3012 -0.0178 8 7 6.2898 -1.1479 -0.0231 9 6 5.6036 -2.2889 -0.0229 10 7 6.3036 -3.4862 -0.0283 11 6 7.6734 -3.4789 -0.0341 12 7 8.3007 -2.3184 -0.0400 13 6 9.6203 -2.2273 -0.0410 14 6 10.2880 -0.8763 -0.0411 15 6 10.3958 -3.4010 -0.0466 16 6 11.8008 -3.3448 -0.0535 17 1 12.3067 -2.5449 -0.5737 18 6 12.5434 -4.3248 0.6137 19 7 12.0001 -5.0053 1.5919 20 14 14.3099 -4.6630 0.1092 21 1 15.2299 -3.8813 0.9740 22 1 14.5993 -6.1116 0.2606 23 1 14.5048 -4.2647 -1.3081 24 6 9.6841 -4.6924 -0.0456 25 8 10.2937 -5.7463 -0.0498 26 7 8.3328 -4.6677 -0.0388 27 1 7.8329 -5.4990 -0.0376 28 7 4.2861 -2.3266 -0.0169 29 6 3.5797 -1.1894 -0.0111 30 6 2.1770 -1.1862 -0.0058 31 1 -0.3633 -0.0051 1.0277 32 1 -0.3634 0.8925 -0.5095 33 1 -0.3634 -0.8875 -0.5181 34 1 1.6357 2.1386 0.0043 35 1 4.0738 2.1953 -0.0060 36 1 6.6654 1.6126 -1.0455 37 1 5.9157 2.0779 0.5004 38 1 7.4282 1.1394 0.4917 39 1 5.8231 -4.3288 -0.0279 40 1 10.4446 -0.5486 -1.0688 41 1 9.6534 -0.1573 0.4768 42 1 11.2491 -0.9460 0.4684 43 1 12.5151 -5.6846 2.0548 44 1 1.6315 -2.1183 -0.0055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020673263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:05 Heat of formation + Delta-G solvation = 93.537978 kcal Electronic energy + Delta-G solvation = -30118.049924 eV Core-core repulsion = 26036.571780 eV Total energy + Delta-G solvation = -4081.478144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.144 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.16246 -39.79397 -38.16830 -36.57329 -35.25038 -34.55393 -33.74790 -32.76140 -32.14895 -30.14221 -29.75398 -28.83157 -27.66712 -26.96240 -25.04733 -23.63367 -22.73570 -21.63493 -21.55693 -20.82114 -18.54552 -18.14086 -17.85900 -16.84617 -16.55832 -16.24802 -15.46463 -15.33540 -15.13492 -14.96371 -14.37466 -14.35865 -14.13138 -13.76338 -13.64976 -13.17169 -13.13277 -13.05538 -12.62138 -12.40232 -12.20124 -12.10595 -12.07842 -11.89695 -11.66659 -11.58509 -11.30413 -11.25421 -11.22847 -10.72863 -10.52108 -10.46820 -10.43343 -9.75306 -9.40782 -9.04366 -8.80437 -8.63319 -8.61792 -7.95227 -7.86724 -7.13683 -6.67138 -4.18837 0.47085 1.00918 2.05552 2.31879 2.81846 3.00812 3.06452 3.10940 3.18260 3.59409 3.85505 4.16971 4.33223 4.36034 4.51973 4.56767 4.67808 4.78373 4.87763 5.06466 5.22330 5.34237 5.38762 5.41672 5.48286 5.60276 5.68234 5.71684 5.82866 5.87676 5.99321 6.04579 6.14012 6.23534 6.42239 6.48650 6.71256 6.76128 6.80184 6.87585 6.90183 6.93177 7.09472 7.44742 7.47598 7.60807 7.90688 7.96913 8.25119 8.50852 8.56685 8.72017 9.42002 9.73565 9.97864 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.002514 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.654821 B =11136.552607 C =12103.183873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.045 4.045 3 C -0.155 4.155 4 C -0.051 4.051 5 C -0.216 4.216 6 C 0.244 3.756 7 C -0.107 4.107 8 N -0.471 5.471 9 C 0.577 3.423 10 N -0.598 5.598 11 C 0.389 3.611 12 N -0.419 5.419 13 C -0.076 4.076 14 C -0.044 4.044 15 C -0.007 4.007 16 C -0.392 4.392 17 H 0.096 0.904 18 C 0.075 3.925 19 N -0.730 5.730 20 Si 0.914 3.086 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.257 1.257 24 C 0.530 3.470 25 O -0.533 6.533 26 N -0.642 5.642 27 H 0.385 0.615 28 N -0.586 5.586 29 C 0.213 3.787 30 C -0.126 4.126 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.419 0.581 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.287 0.713 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 11.112 -1.630 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.174 4.174 4 C -0.072 4.072 5 C -0.223 4.223 6 C 0.080 3.920 7 C -0.164 4.164 8 N -0.188 5.188 9 C 0.220 3.780 10 N -0.229 5.229 11 C 0.044 3.956 12 N -0.141 5.141 13 C -0.202 4.202 14 C -0.101 4.101 15 C -0.017 4.017 16 C -0.420 4.420 17 H 0.114 0.886 18 C -0.151 4.151 19 N -0.350 5.350 20 Si 0.737 3.263 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.181 1.181 24 C 0.325 3.675 25 O -0.410 6.410 26 N -0.291 5.291 27 H 0.220 0.780 28 N -0.313 5.313 29 C 0.082 3.918 30 C -0.146 4.146 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.256 0.744 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.599 10.208 -1.439 17.872 hybrid contribution 0.129 -1.329 -0.155 1.344 sum -14.470 8.879 -1.594 17.052 Atomic orbital electron populations 1.20863 0.91014 1.02928 1.02525 1.19653 0.96136 0.92800 0.96188 1.20651 0.94250 0.97315 1.05212 1.20884 0.94006 0.96660 0.95619 1.19291 0.95574 0.95465 1.11938 1.22163 0.89244 0.94476 0.86086 1.20803 1.00666 0.91216 1.03718 1.68492 1.38250 0.96301 1.15777 1.18923 0.84355 0.85837 0.88898 1.40285 1.02775 1.05492 1.74373 1.17518 0.82004 0.82692 1.13365 1.67014 1.11621 1.19098 1.16393 1.20297 0.86274 0.94316 1.19265 1.19888 0.98556 0.92400 0.99292 1.20181 0.94662 0.88938 0.97900 1.19293 0.90274 1.08016 1.24460 0.88621 1.25995 1.01539 0.94127 0.93436 1.69768 1.38336 1.14449 1.12430 0.86201 0.80856 0.78661 0.80570 1.19406 1.19842 1.18111 1.19245 0.78902 0.91777 0.77618 1.90729 1.65270 1.33303 1.51679 1.44039 1.08907 1.07339 1.68783 0.77984 1.68054 1.05811 1.30195 1.27211 1.18463 0.93794 0.86928 0.92583 1.20397 0.91185 0.98201 1.04800 0.90892 0.91346 0.91345 0.85955 0.85149 0.89490 0.90459 0.88936 0.74366 0.94505 0.93611 0.92282 0.90187 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.98 36.00 0.36 -0.44 16 2 C -0.04 -0.45 5.85 -104.94 -0.61 -1.07 16 3 C -0.16 -1.49 9.59 -39.89 -0.38 -1.87 16 4 C -0.05 -0.55 9.33 -39.55 -0.37 -0.92 16 5 C -0.22 -3.08 5.74 -106.81 -0.61 -3.70 16 6 C 0.24 3.77 6.90 -81.72 -0.56 3.21 16 7 C -0.11 -1.21 9.79 36.00 0.35 -0.86 16 8 N -0.47 -8.97 7.39 -9.69 -0.07 -9.04 16 9 C 0.58 10.94 8.36 -322.43 -2.70 8.24 16 10 N -0.60 -11.05 5.48 -14.59 -0.08 -11.13 16 11 C 0.39 8.45 8.42 -320.98 -2.70 5.74 16 12 N -0.42 -9.75 7.27 -9.34 -0.07 -9.82 16 13 C -0.08 -1.84 6.89 -81.48 -0.56 -2.41 16 14 C -0.04 -0.90 9.67 36.01 0.35 -0.55 16 15 C -0.01 -0.19 5.57 -104.33 -0.58 -0.77 16 16 C -0.39 -10.02 7.86 -38.07 -0.30 -10.32 16 17 H 0.10 2.27 7.36 -52.48 -0.39 1.88 16 18 C 0.08 1.88 4.54 -17.30 -0.08 1.80 16 19 N -0.73 -19.29 11.22 55.55 0.62 -18.67 16 20 Si 0.91 18.69 29.62 -169.99 -5.03 13.65 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C 0.53 13.81 7.50 -12.34 -0.09 13.72 16 25 O -0.53 -15.06 15.01 5.14 0.08 -14.99 16 26 N -0.64 -14.05 5.30 -13.71 -0.07 -14.13 16 27 H 0.39 7.14 8.80 -40.82 -0.36 6.78 16 28 N -0.59 -10.27 10.46 -11.88 -0.12 -10.40 16 29 C 0.21 3.33 6.62 -84.82 -0.56 2.77 16 30 C -0.13 -1.60 9.61 -39.54 -0.38 -1.98 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.01 6.52 -52.49 -0.34 0.67 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.63 6.56 -51.93 -0.34 0.29 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.42 6.41 8.80 -40.82 -0.36 6.05 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.20 7.00 -51.93 -0.36 0.84 16 43 H 0.29 6.97 8.30 -40.82 -0.34 6.64 16 44 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -32.94 371.59 -13.67 -46.61 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.08 Total: 11.70 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: -9.44 Total: 10.61 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: 0.21 Total: -73.18 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.08 Total: -14.99 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.94 -13.67 -46.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020673263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.146 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds