Wall clock time and date at job start Tue Mar 31 2020 05:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.51179 * 2 1 4 4 C 1.53101 * 109.50810 * 239.90678 * 2 1 3 5 5 N 1.47011 * 109.25758 * 183.17576 * 4 2 1 6 6 C 1.46897 * 111.00128 * 182.39808 * 5 4 2 7 7 C 1.50697 * 109.47577 * 170.00115 * 6 5 4 8 8 O 1.21296 * 120.00090 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00055 * 179.97438 * 7 6 5 10 10 C 1.39939 * 119.99790 * 174.26049 * 9 7 6 11 11 C 1.38688 * 120.11617 * 335.23783 * 10 9 7 12 12 C 1.38214 * 120.02019 * 180.30306 * 11 10 9 13 13 C 1.38394 * 120.24881 * 359.67260 * 12 11 10 14 14 C 1.38084 * 120.22875 * 0.02562 * 13 12 11 15 15 C 1.38989 * 119.97764 * 0.02562 * 14 13 12 16 16 S 1.76203 * 120.12141 * 180.02562 * 15 14 13 17 17 C 1.76198 * 100.00101 * 354.38870 * 16 15 14 18 18 H 1.07998 * 120.00051 * 5.02619 * 17 16 15 19 19 C 1.38692 * 119.99479 * 185.03436 * 17 16 15 20 20 N 1.31650 * 120.00530 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99531 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47396 * 59.99657 * 21 19 17 23 23 H 1.48495 * 109.47132 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47101 * 299.99415 * 21 19 17 25 25 C 1.47010 * 110.75745 * 58.61687 * 5 4 2 26 26 C 1.53100 * 109.25660 * 301.38874 * 25 5 4 27 27 H 1.08999 * 109.50631 * 176.78109 * 26 25 5 28 28 C 1.53003 * 109.53855 * 296.88432 * 26 25 5 29 29 O 1.43009 * 109.26141 * 56.84175 * 26 25 5 30 30 H 1.09000 * 109.47335 * 180.08701 * 1 2 3 31 31 H 1.08998 * 109.47552 * 300.09563 * 1 2 3 32 32 H 1.09010 * 109.46925 * 60.09122 * 1 2 3 33 33 H 1.09002 * 109.50540 * 63.24481 * 4 2 1 34 34 H 1.08997 * 109.54307 * 303.13214 * 4 2 1 35 35 H 1.08999 * 109.47503 * 49.99651 * 6 5 4 36 36 H 1.09004 * 109.46866 * 290.00034 * 6 5 4 37 37 H 0.96992 * 120.00293 * 354.25313 * 9 7 6 38 38 H 1.08002 * 119.98892 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.87414 * 179.69678 * 12 11 10 40 40 H 1.08005 * 119.88543 * 180.02562 * 13 12 11 41 41 H 1.08005 * 120.00819 * 180.02562 * 14 13 12 42 42 H 0.96996 * 119.99869 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.50085 * 61.31618 * 25 5 4 44 44 H 1.08994 * 109.51082 * 181.44553 * 25 5 4 45 45 H 1.09005 * 109.46756 * 179.80689 * 28 26 25 46 46 H 1.09002 * 109.47155 * 299.80351 * 28 26 25 47 47 H 1.09000 * 109.47152 * 59.80844 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7236 -1.2486 5 7 3.5093 -0.7872 -1.2051 6 6 4.0446 -1.4252 -2.4152 7 6 5.5415 -1.2548 -2.4527 8 8 6.1068 -0.6600 -1.5594 9 7 6.2521 -1.7634 -3.4788 10 6 7.6236 -1.5032 -3.5768 11 6 8.1613 -0.3709 -2.9835 12 6 9.5152 -0.1126 -3.0869 13 6 10.3405 -0.9841 -3.7757 14 6 9.8171 -2.1179 -4.3651 15 6 8.4569 -2.3863 -4.2679 16 16 7.7851 -3.8322 -5.0181 17 6 9.2130 -4.4330 -5.8576 18 1 10.1649 -3.9406 -5.7242 19 6 9.1143 -5.5382 -6.6897 20 7 7.9540 -6.1386 -6.8520 21 14 10.6279 -6.1747 -7.5803 22 1 11.6596 -6.5650 -6.5862 23 1 10.2593 -7.3564 -8.4004 24 1 11.1683 -5.1089 -8.4620 25 6 3.9648 -1.4870 0.0049 26 6 3.4342 -0.7558 1.2409 27 1 3.7215 -1.3030 2.1388 28 6 4.0228 0.6555 1.2926 29 8 2.0083 -0.6760 1.1660 30 1 -0.3634 -1.0277 0.0016 31 1 -0.3634 0.5153 0.8891 32 1 -0.3633 0.5125 -0.8909 33 1 1.7267 -0.1793 -2.1391 34 1 1.6337 -1.7342 -1.2769 35 1 3.6038 -0.9598 -3.2967 36 1 3.8000 -2.4874 -2.4045 37 1 5.8130 -2.3097 -4.1492 38 1 7.5211 0.3117 -2.4443 39 1 9.9305 0.7724 -2.6281 40 1 11.3977 -0.7768 -3.8525 41 1 10.4646 -2.7958 -4.9015 42 1 7.8852 -6.9117 -7.4337 43 1 3.5880 -2.5098 -0.0026 44 1 5.0544 -1.5000 0.0294 45 1 3.6417 1.1762 2.1711 46 1 5.1096 0.5941 1.3498 47 1 3.7365 1.2017 0.3938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021762993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:11 Heat of formation + Delta-G solvation = -41.964262 kcal Electronic energy + Delta-G solvation = -28534.933895 eV Core-core repulsion = 24616.157044 eV Total energy + Delta-G solvation = -3918.776851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.57945 -39.69100 -37.80716 -35.66525 -34.37893 -33.53714 -32.78791 -30.78834 -30.34245 -29.45786 -27.53472 -27.02203 -25.91435 -23.83068 -22.91187 -22.40445 -21.73777 -19.95283 -19.62267 -18.41440 -17.13887 -16.90160 -16.58878 -16.34371 -15.99415 -15.69803 -15.20503 -15.11356 -14.84763 -14.58592 -14.29305 -13.97340 -13.72073 -13.49441 -13.09095 -12.97668 -12.96265 -12.73322 -12.56716 -12.29828 -12.16118 -12.00251 -11.73681 -11.70280 -11.47138 -11.34599 -11.23341 -11.16212 -11.11619 -10.46896 -10.41002 -10.13459 -9.92746 -9.76358 -9.59085 -9.26428 -8.81276 -8.69478 -8.52477 -7.66936 -6.56485 -6.55228 -4.27410 1.83358 2.06938 2.85811 2.95435 3.09378 3.10478 3.13614 3.31641 3.54983 3.79286 3.95253 4.44047 4.53445 4.66490 4.70669 4.87221 4.89576 4.91295 4.97982 5.07569 5.12818 5.16564 5.22088 5.26309 5.32389 5.36892 5.57190 5.63110 5.65663 5.69109 5.74225 5.83680 5.87189 5.89274 5.96477 6.16133 6.20782 6.27393 6.54968 6.62007 6.74490 6.83888 6.89594 7.07757 7.10345 7.20574 7.42293 7.66958 7.76105 8.09829 8.37222 8.92564 10.51186 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.002458 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.403728 B =11387.044456 C =12609.969081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.023 3.977 5 N -0.515 5.515 6 C 0.035 3.965 7 C 0.512 3.488 8 O -0.510 6.510 9 N -0.657 5.657 10 C 0.128 3.872 11 C -0.111 4.111 12 C -0.146 4.146 13 C -0.118 4.118 14 C -0.128 4.128 15 C -0.107 4.107 16 S 0.029 5.971 17 C -0.545 4.545 18 H 0.095 0.905 19 C 0.078 3.922 20 N -0.866 5.866 21 Si 0.924 3.076 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.270 1.270 25 C 0.017 3.983 26 C 0.094 3.906 27 H 0.103 0.897 28 C -0.171 4.171 29 O -0.381 6.381 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.274 0.726 43 H 0.038 0.962 44 H 0.108 0.892 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.197 10.840 10.083 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.088 0.912 4 C -0.105 4.105 5 N -0.240 5.240 6 C -0.096 4.096 7 C 0.299 3.701 8 O -0.385 6.385 9 N -0.302 5.302 10 C 0.026 3.974 11 C -0.133 4.133 12 C -0.169 4.169 13 C -0.139 4.139 14 C -0.154 4.154 15 C -0.224 4.224 16 S 0.283 5.717 17 C -0.692 4.692 18 H 0.112 0.888 19 C -0.133 4.133 20 N -0.500 5.500 21 Si 0.750 3.250 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.111 4.111 26 C 0.036 3.964 27 H 0.121 0.879 28 C -0.228 4.228 29 O -0.300 6.300 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.155 0.845 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.156 0.844 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.117 10.800 10.686 19.433 hybrid contribution 1.885 -1.049 -1.345 2.542 sum -10.232 9.750 9.341 16.942 Atomic orbital electron populations 1.21748 0.92921 1.02912 1.02600 1.22112 0.94498 0.96144 0.84295 0.91177 1.22870 0.87436 1.00460 0.99734 1.61846 1.08169 1.52789 1.01157 1.21981 0.92678 0.99679 0.95245 1.20446 0.89147 0.79125 0.81415 1.90612 1.71278 1.40466 1.36171 1.43424 1.07682 1.51891 1.27214 1.17184 0.82005 0.95183 1.03078 1.21086 0.95709 0.95861 1.00637 1.20764 0.93465 1.00196 1.02513 1.20968 0.98954 0.95239 0.98757 1.21282 0.94135 0.98365 1.01619 1.22449 0.96450 1.00523 1.03020 1.83048 1.18401 1.16400 1.53853 1.23218 0.95889 1.17826 1.32276 0.88784 1.25086 0.97531 0.95314 0.95325 1.69981 1.23865 1.20229 1.35909 0.86105 0.81129 0.78432 0.79373 1.19481 1.20581 1.19468 1.23012 1.03398 0.95018 0.89697 1.22230 0.80152 0.96775 0.97256 0.87889 1.22226 1.01841 0.96556 1.02172 1.88015 1.21228 1.78098 1.42668 0.91915 0.91599 0.90974 0.89576 0.93766 0.87366 0.91339 0.75209 0.84506 0.87025 0.87131 0.84447 0.91622 0.94402 0.87415 0.92895 0.91240 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.57 37.15 0.36 -0.67 16 2 C 0.09 0.82 3.03 -26.68 -0.08 0.74 16 3 H 0.07 0.67 6.49 -51.93 -0.34 0.34 16 4 C 0.02 0.22 4.93 -3.71 -0.02 0.20 16 5 N -0.51 -5.87 3.83 -235.76 -0.90 -6.78 16 6 C 0.04 0.40 5.45 -4.98 -0.03 0.37 16 7 C 0.51 7.66 7.34 -10.99 -0.08 7.58 16 8 O -0.51 -8.79 11.52 5.54 0.06 -8.73 16 9 N -0.66 -10.81 5.16 -9.70 -0.05 -10.86 16 10 C 0.13 2.47 6.44 -83.44 -0.54 1.93 16 11 C -0.11 -2.04 8.72 -39.42 -0.34 -2.38 16 12 C -0.15 -2.50 10.04 -39.53 -0.40 -2.90 16 13 C -0.12 -2.11 10.03 -39.58 -0.40 -2.51 16 14 C -0.13 -2.66 9.26 -39.36 -0.36 -3.02 16 15 C -0.11 -2.31 6.12 -38.76 -0.24 -2.55 16 16 S 0.03 0.70 20.37 -107.50 -2.19 -1.49 16 17 C -0.55 -14.25 9.08 30.90 0.28 -13.97 16 18 H 0.09 2.36 4.81 -52.49 -0.25 2.11 16 19 C 0.08 2.02 5.49 -17.46 -0.10 1.93 16 20 N -0.87 -23.57 13.22 55.48 0.73 -22.84 16 21 Si 0.92 20.00 29.55 -169.99 -5.02 14.97 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.02 0.20 4.71 -3.71 -0.02 0.18 16 26 C 0.09 1.02 3.92 -26.68 -0.10 0.92 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 C -0.17 -1.82 8.89 37.16 0.33 -1.49 16 29 O -0.38 -4.34 10.28 -35.23 -0.36 -4.71 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.11 0.99 8.04 -51.93 -0.42 0.57 16 36 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.41 6.33 7.66 -40.82 -0.31 6.02 16 38 H 0.14 2.47 5.79 -52.49 -0.30 2.17 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.14 2.94 4.93 -52.48 -0.26 2.68 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 1.51 5.88 -51.93 -0.31 1.20 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.82 6.13 -51.93 -0.32 0.50 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -29.84 383.77 -10.39 -40.23 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.71 Total: 10.05 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -1.74 Total: -15.64 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.22 Total: -40.47 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.30 Total: -13.43 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.19 Total: -1.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.84 -10.39 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021762993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.732 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds