Wall clock time and date at job start Tue Mar 31 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48500 * 109.47173 * 270.00226 * 3 2 1 5 5 H 1.48502 * 109.46988 * 30.00268 * 3 2 1 6 6 H 1.48497 * 109.47159 * 149.99860 * 3 2 1 7 7 C 1.38632 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00232 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.35778 * 117.00377 * 185.40473 * 9 7 2 11 11 C 1.38910 * 119.99704 * 186.16898 * 10 9 7 12 12 C 1.37992 * 120.00086 * 180.25312 * 11 10 9 13 13 C 1.38944 * 119.99759 * 359.46952 * 12 11 10 14 14 N 1.39911 * 120.00558 * 180.29849 * 13 12 11 15 15 C 1.34778 * 119.99773 * 33.69646 * 14 13 12 16 16 O 1.21570 * 120.00461 * 5.22019 * 15 14 13 17 17 C 1.47745 * 119.99731 * 185.22207 * 15 14 13 18 18 C 1.39643 * 120.15158 * 0.02562 * 17 15 14 19 19 C 1.37900 * 119.89081 * 180.02562 * 18 17 15 20 20 C 1.38402 * 120.19652 * 359.97438 * 19 18 17 21 21 C 1.38378 * 120.30527 * 0.02562 * 20 19 18 22 22 Cl 1.73608 * 119.94438 * 180.02562 * 21 20 19 23 23 C 1.38268 * 120.10858 * 359.71673 * 21 20 19 24 24 Cl 1.73598 * 120.09993 * 180.27839 * 23 21 20 25 25 C 1.38940 * 119.98905 * 0.27343 * 13 12 11 26 26 C 1.37988 * 120.00162 * 0.02562 * 25 13 12 27 27 H 0.97003 * 119.99487 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99793 * 0.02562 * 11 10 9 29 29 H 1.08001 * 120.00208 * 179.74437 * 12 11 10 30 30 H 0.96997 * 119.99857 * 213.69295 * 14 13 12 31 31 H 1.07997 * 120.05815 * 0.02562 * 18 17 15 32 32 H 1.08002 * 119.90197 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.84646 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.00157 * 180.02562 * 25 13 12 35 35 H 1.08001 * 120.00148 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0696 -3.5042 0.1129 11 6 1.4549 -4.7439 -0.0087 12 6 2.2007 -5.8987 0.1117 13 6 3.5684 -5.8213 0.3436 14 7 4.3258 -6.9919 0.4596 15 6 3.9982 -8.0809 -0.2638 16 8 3.1050 -8.0183 -1.0862 17 6 4.7245 -9.3508 -0.0574 18 6 5.7506 -9.4265 0.8867 19 6 6.4254 -10.6143 1.0746 20 6 6.0882 -11.7317 0.3307 21 6 5.0727 -11.6658 -0.6070 22 17 4.6571 -13.0733 -1.5345 23 6 4.3843 -10.4826 -0.8020 24 17 3.1056 -10.4023 -1.9734 25 6 4.1840 -4.5811 0.4599 26 6 3.4369 -3.4266 0.3456 27 1 -0.4849 0.8401 0.0004 28 1 0.3925 -4.8040 -0.1939 29 1 1.7220 -6.8626 0.0213 30 1 5.0867 -7.0197 1.0605 31 1 6.0154 -8.5562 1.4688 32 1 7.2187 -10.6732 1.8051 33 1 6.6206 -12.6590 0.4822 34 1 5.2472 -4.5207 0.6398 35 1 3.9153 -2.4626 0.4364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:24 Heat of formation + Delta-G solvation = -5.677435 kcal Electronic energy + Delta-G solvation = -24214.384907 eV Core-core repulsion = 20230.629084 eV Total energy + Delta-G solvation = -3983.755824 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 351.022 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72016 -39.36107 -38.48219 -36.93874 -36.70989 -36.41645 -34.14227 -32.28388 -31.67510 -31.11313 -30.25254 -27.95238 -25.47596 -24.47417 -23.21037 -22.34615 -21.61059 -20.34082 -18.72470 -17.98617 -17.34033 -16.81036 -16.60317 -16.02823 -15.56601 -15.29119 -14.68842 -14.59356 -14.49781 -14.19485 -14.04467 -13.61222 -13.42829 -12.85495 -12.63258 -12.54960 -12.38041 -12.11091 -11.88012 -11.79652 -11.66674 -11.55288 -11.53351 -11.09323 -11.02442 -10.77001 -10.46907 -9.71379 -9.54701 -9.48988 -9.32580 -9.17432 -8.72687 -8.23846 -6.95985 -6.46586 -4.04387 0.17071 0.45713 1.45553 1.90150 2.06624 2.17516 2.60104 3.06339 3.11868 3.12569 3.17234 3.34583 3.95255 4.14719 4.23364 4.39797 4.55588 4.61263 4.72698 4.97079 5.09145 5.28602 5.36208 5.41581 5.51851 5.62730 5.74289 5.93768 6.08780 6.17662 6.23195 6.76484 6.80437 6.93250 7.11246 7.18940 7.37677 7.60029 7.73515 7.97686 8.22765 8.98654 9.68835 10.71253 Molecular weight = 351.02amu Principal moments of inertia in cm(-1) A = 0.029011 B = 0.002037 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.927868 B =13744.820430 C =14450.220471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.148 3.852 11 C -0.177 4.177 12 C -0.064 4.064 13 C 0.035 3.965 14 N -0.651 5.651 15 C 0.543 3.457 16 O -0.495 6.495 17 C -0.111 4.111 18 C -0.073 4.073 19 C -0.111 4.111 20 C -0.078 4.078 21 C -0.043 4.043 22 Cl -0.044 7.044 23 C 0.015 3.985 24 Cl -0.005 7.005 25 C -0.088 4.088 26 C -0.219 4.219 27 H 0.270 0.730 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.399 0.601 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.111 0.889 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.130 -23.092 3.195 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.094 3.906 11 C -0.197 4.197 12 C -0.084 4.084 13 C -0.057 4.057 14 N -0.297 5.297 15 C 0.329 3.671 16 O -0.369 6.369 17 C -0.115 4.115 18 C -0.092 4.092 19 C -0.130 4.130 20 C -0.097 4.097 21 C -0.071 4.071 22 Cl -0.015 7.015 23 C -0.014 4.014 24 Cl 0.025 6.975 25 C -0.108 4.108 26 C -0.239 4.239 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.235 0.765 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.129 0.871 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.863 -22.958 2.380 26.924 hybrid contribution 0.896 0.655 0.190 1.126 sum 14.759 -22.302 2.570 26.867 Atomic orbital electron populations 1.70048 1.05961 1.27716 1.45797 1.25300 0.95855 0.98873 0.96552 0.85708 0.78867 0.80080 0.78742 1.19860 1.20262 1.19213 1.21309 0.91764 0.80860 1.52805 0.89075 1.84004 1.34194 1.11436 1.78179 1.19435 0.90391 0.88051 0.92759 1.20120 1.00146 0.89530 1.09880 1.20600 0.91553 0.97970 0.98316 1.17169 0.90688 0.84263 1.13603 1.43061 1.32172 1.11055 1.43395 1.17948 0.84282 0.83192 0.81681 1.90911 1.29908 1.83685 1.32446 1.19814 0.99102 0.93730 0.98857 1.21454 0.93286 0.98938 0.95530 1.21166 1.00281 0.91766 0.99743 1.21249 0.94895 1.00165 0.93439 1.20739 0.99274 0.88440 0.98630 1.98405 1.92856 1.38234 1.72000 1.20897 0.93398 0.92558 0.94565 1.98459 1.46504 1.98238 1.54296 1.20456 0.98270 0.90739 1.01336 1.20972 0.94215 0.98358 1.10352 0.91973 0.86063 0.85708 0.76507 0.84004 0.83671 0.83607 0.87136 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.79 9.44 30.88 0.29 -10.49 16 8 H 0.09 2.30 5.29 -52.49 -0.28 2.03 16 9 O -0.17 -4.96 9.75 0.00 0.00 -4.96 16 10 C 0.15 3.55 6.65 -39.08 -0.26 3.29 16 11 C -0.18 -3.85 9.98 -39.42 -0.39 -4.24 16 12 C -0.06 -1.25 8.64 -39.41 -0.34 -1.59 16 13 C 0.03 0.60 6.27 -83.65 -0.52 0.07 16 14 N -0.65 -8.54 5.28 -10.70 -0.06 -8.60 16 15 C 0.54 7.66 7.50 -12.37 -0.09 7.56 16 16 O -0.49 -8.75 11.67 5.30 0.06 -8.69 16 17 C -0.11 -1.20 5.88 -104.95 -0.62 -1.82 16 18 C -0.07 -0.51 9.54 -39.18 -0.37 -0.88 16 19 C -0.11 -0.59 10.03 -39.64 -0.40 -0.98 16 20 C -0.08 -0.49 9.82 -39.47 -0.39 -0.88 16 21 C -0.04 -0.39 6.32 -39.52 -0.25 -0.64 16 22 Cl -0.04 -0.39 27.95 -51.86 -1.45 -1.84 16 23 C 0.01 0.17 6.36 -39.03 -0.25 -0.08 16 24 Cl 0.00 -0.06 25.02 -51.86 -1.30 -1.36 16 25 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16 26 C -0.22 -4.60 9.12 -39.42 -0.36 -4.96 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 29 H 0.13 2.35 6.43 -52.49 -0.34 2.01 16 30 H 0.40 3.61 6.87 -40.82 -0.28 3.33 16 31 H 0.14 0.61 6.42 -52.49 -0.34 0.28 16 32 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 33 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.13 2.73 5.71 -52.49 -0.30 2.43 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -33.04 336.49 -8.74 -41.78 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -2.36 Total: 4.33 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -4.44 Total: -16.61 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.70 Total: -32.95 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.06 Total: -13.65 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -2.75 Total: -3.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.04 -8.74 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.099 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds