Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46652 * 2 1 4 4 C 1.50700 * 109.47200 * 239.99874 * 2 1 3 5 5 O 1.21274 * 119.99748 * 249.24814 * 4 2 1 6 6 N 1.34781 * 119.99775 * 69.25295 * 4 2 1 7 7 C 1.39240 * 119.99482 * 185.12133 * 6 4 2 8 8 C 1.39483 * 119.82848 * 214.43020 * 7 6 4 9 9 C 1.36373 * 120.16603 * 179.71922 * 8 7 6 10 10 C 1.40878 * 119.82804 * 0.57591 * 9 8 7 11 11 C 1.41151 * 120.16513 * 179.67793 * 10 9 8 12 12 H 1.08000 * 119.99716 * 210.39229 * 11 10 9 13 13 C 1.39906 * 120.00076 * 30.38733 * 11 10 9 14 14 N 1.30875 * 119.99938 * 9.01286 * 13 11 10 15 15 Si 1.86797 * 120.00277 * 189.00804 * 13 11 10 16 16 H 1.48506 * 109.47045 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47390 * 120.00269 * 15 13 11 18 18 H 1.48499 * 109.47123 * 240.00764 * 15 13 11 19 19 C 1.40866 * 119.67069 * 359.69891 * 10 9 8 20 20 C 1.36378 * 119.82976 * 0.02562 * 19 10 9 21 21 N 1.46897 * 109.47165 * 119.99576 * 2 1 3 22 22 C 1.47166 * 110.99842 * 49.01798 * 21 2 1 23 23 C 1.52902 * 108.49250 * 165.28293 * 22 21 2 24 24 C 1.50719 * 109.87417 * 50.44258 * 23 22 21 25 25 C 1.38822 * 118.38706 * 163.35273 * 24 23 22 26 26 C 1.38030 * 120.31424 * 179.75957 * 25 24 23 27 27 C 1.38256 * 119.82605 * 359.91915 * 26 25 24 28 28 C 1.38010 * 119.87631 * 0.07842 * 27 26 25 29 29 C 1.37695 * 121.76240 * 343.06228 * 24 23 22 30 30 C 1.46631 * 111.00239 * 286.03608 * 21 2 1 31 31 H 1.08993 * 109.47571 * 299.99754 * 1 2 3 32 32 H 1.09001 * 109.47472 * 60.00501 * 1 2 3 33 33 H 1.09002 * 109.46652 * 180.02562 * 1 2 3 34 34 H 0.97002 * 120.00229 * 5.12207 * 6 4 2 35 35 H 1.07994 * 119.91887 * 0.02562 * 8 7 6 36 36 H 1.08005 * 120.08657 * 180.25716 * 9 8 7 37 37 H 0.96994 * 120.00248 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.08883 * 179.97438 * 19 10 9 39 39 H 1.07997 * 119.91566 * 180.02562 * 20 19 10 40 40 H 1.08996 * 109.63171 * 45.58254 * 22 21 2 41 41 H 1.08993 * 109.79963 * 285.08202 * 22 21 2 42 42 H 1.08994 * 109.38945 * 170.54465 * 23 22 21 43 43 H 1.08999 * 109.39043 * 290.34539 * 23 22 21 44 44 H 1.08004 * 119.85309 * 359.68762 * 25 24 23 45 45 H 1.07998 * 120.08410 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.06436 * 180.02562 * 27 26 25 47 47 H 1.08002 * 119.81546 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.27260 * 296.16789 * 30 21 2 49 49 H 1.08999 * 109.27466 * 55.67287 * 30 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5853 -1.7848 -1.1270 6 7 1.8671 -0.1517 -2.4458 7 6 2.2342 -0.8542 -3.5906 8 6 2.7526 -0.1684 -4.6890 9 6 3.1197 -0.8502 -5.8116 10 6 2.9628 -2.2492 -5.8645 11 6 3.3341 -2.9612 -7.0254 12 1 2.8122 -3.8682 -7.2925 13 6 4.3780 -2.4919 -7.8299 14 7 5.1246 -1.4984 -7.4196 15 14 4.7064 -3.2833 -9.4898 16 1 3.7287 -4.3775 -9.7185 17 1 4.5671 -2.2639 -10.5605 18 1 6.0839 -3.8375 -9.5101 19 6 2.4332 -2.9340 -4.7532 20 6 2.0758 -2.2392 -3.6355 21 7 2.0197 -0.6924 1.1995 22 6 1.3459 -1.9894 1.3717 23 6 2.1333 -2.8133 2.3910 24 6 2.3840 -1.9922 3.6297 25 6 2.7643 -2.6497 4.7917 26 6 3.0088 -1.9363 5.9477 27 6 2.8760 -0.5601 5.9476 28 6 2.4980 0.0940 4.7926 29 6 2.2510 -0.6216 3.6300 30 6 1.8383 0.1363 2.3955 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.4926 0.7397 -2.5230 35 1 2.8682 0.9045 -4.6486 36 1 3.5248 -0.3184 -6.6599 37 1 5.8485 -1.1732 -7.9772 38 1 2.3096 -4.0064 -4.7866 39 1 1.6700 -2.7629 -2.7825 40 1 1.3174 -2.5167 0.4181 41 1 0.3300 -1.8325 1.7339 42 1 1.5620 -3.7029 2.6560 43 1 3.0870 -3.1121 1.9557 44 1 2.8682 -3.7247 4.7917 45 1 3.3040 -2.4516 6.8497 46 1 3.0668 0.0020 6.8499 47 1 2.3941 1.1690 4.7937 48 1 2.4471 1.0360 2.3055 49 1 0.7892 0.4191 2.4816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025410375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = 19.926647 kcal Electronic energy + Delta-G solvation = -29818.545520 eV Core-core repulsion = 25902.841604 eV Total energy + Delta-G solvation = -3915.703917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 350.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.63091 -39.56708 -37.82934 -36.73290 -34.39351 -33.59340 -32.87267 -32.31860 -29.95024 -29.52080 -29.20873 -28.67049 -25.77607 -24.95418 -23.93538 -22.88309 -22.33433 -21.46096 -20.66231 -19.63568 -19.03901 -17.37597 -17.19990 -16.70482 -16.42981 -15.74538 -15.43843 -15.16088 -15.04234 -14.77031 -14.56498 -14.33844 -13.92536 -13.73652 -13.52739 -13.23612 -13.15487 -12.91936 -12.63192 -12.43035 -12.18147 -12.16304 -12.12188 -11.97837 -11.76708 -11.58907 -11.36196 -11.31557 -11.14194 -10.98620 -10.87960 -10.72794 -10.64488 -9.90227 -9.50854 -9.35230 -9.12342 -8.98242 -8.86313 -8.70219 -8.30283 -7.54243 -6.89975 -6.67262 -4.30818 1.19631 1.23593 2.56920 3.01675 3.08428 3.09979 3.14747 3.29310 3.47849 3.59981 3.96207 4.00316 4.49185 4.62198 4.67910 4.78291 4.81924 4.86649 4.90761 5.02997 5.08159 5.15707 5.22284 5.28117 5.34253 5.42816 5.49914 5.58929 5.62601 5.69547 5.80321 5.84948 5.90596 5.96615 6.13891 6.19950 6.31059 6.33571 6.40199 6.46786 6.78145 6.80401 6.90074 6.93406 6.99580 7.07044 7.21137 7.29701 7.60998 7.74398 7.90195 8.05299 8.29002 8.30956 8.61888 8.80766 8.91243 9.01369 10.25834 Molecular weight = 350.17amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.001959 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.086830 B =14290.978947 C =14767.564703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.064 3.936 3 H 0.103 0.897 4 C 0.506 3.494 5 O -0.511 6.511 6 N -0.653 5.653 7 C 0.004 3.996 8 C -0.118 4.118 9 C -0.144 4.144 10 C 0.103 3.897 11 C -0.459 4.459 12 H 0.077 0.923 13 C 0.071 3.929 14 N -0.803 5.803 15 Si 0.911 3.089 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.275 1.275 19 C -0.209 4.209 20 C -0.079 4.079 21 N -0.507 5.507 22 C 0.051 3.949 23 C -0.076 4.076 24 C -0.061 4.061 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.127 4.127 28 C -0.116 4.116 29 C -0.077 4.077 30 C 0.092 3.908 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.393 0.607 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.278 0.722 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.087 0.913 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 5.465 20.503 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.048 4.048 3 H 0.121 0.879 4 C 0.292 3.708 5 O -0.386 6.386 6 N -0.297 5.297 7 C -0.088 4.088 8 C -0.138 4.138 9 C -0.164 4.164 10 C 0.101 3.899 11 C -0.490 4.490 12 H 0.095 0.905 13 C -0.145 4.145 14 N -0.430 5.430 15 Si 0.736 3.264 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.229 4.229 20 C -0.099 4.099 21 N -0.231 5.231 22 C -0.076 4.076 23 C -0.114 4.114 24 C -0.062 4.062 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.145 4.145 28 C -0.135 4.135 29 C -0.077 4.077 30 C -0.035 4.035 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.226 0.774 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.105 0.895 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.793 4.720 20.455 22.064 hybrid contribution -0.569 0.438 -0.537 0.897 sum -7.362 5.158 19.918 21.853 Atomic orbital electron populations 1.22401 0.95198 1.03451 1.03015 1.21610 0.94138 0.98792 0.90256 0.87931 1.20208 0.79978 0.86828 0.83831 1.90673 1.40641 1.21617 1.85655 1.42992 1.62679 1.19174 1.04815 1.17164 1.12515 0.91724 0.87401 1.20255 1.01438 0.97525 0.94588 1.20952 1.03461 0.94380 0.97610 1.17685 0.88840 0.91766 0.91623 1.19560 1.14508 1.08833 1.06064 0.90477 1.25898 0.95019 0.94367 0.99235 1.69810 1.14496 1.22375 1.36310 0.86209 0.78914 0.79874 0.81376 1.18516 1.19868 1.20029 1.20713 1.10429 0.97860 0.93940 1.20199 1.00176 0.92321 0.97246 1.62104 1.56953 1.03418 1.00596 1.22273 0.94266 0.90190 1.00891 1.20561 1.01954 0.96842 0.92008 1.19696 0.98016 0.93239 0.95206 1.21170 1.00353 0.99924 0.92580 1.21069 1.00498 0.94365 0.98062 1.21002 1.00877 0.94658 0.97995 1.20994 1.00308 0.99647 0.92515 1.19493 1.00421 0.93261 0.94547 1.20988 0.99498 0.95705 0.87334 0.91684 0.91061 0.91418 0.77366 0.89161 0.85943 0.91064 0.88692 0.88261 0.88292 0.94759 0.90543 0.89217 0.86121 0.86273 0.86248 0.86207 0.89471 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.38 37.16 0.31 -1.44 16 2 C 0.06 0.78 2.70 -68.87 -0.19 0.59 16 3 H 0.10 1.04 8.02 -51.93 -0.42 0.62 16 4 C 0.51 8.53 6.56 -10.98 -0.07 8.46 16 5 O -0.51 -10.76 12.21 5.56 0.07 -10.69 16 6 N -0.65 -11.11 5.31 -9.74 -0.05 -11.16 16 7 C 0.00 0.09 6.26 -83.57 -0.52 -0.43 16 8 C -0.12 -2.67 9.90 -39.79 -0.39 -3.07 16 9 C -0.14 -3.69 8.59 -39.26 -0.34 -4.03 16 10 C 0.10 2.77 5.54 -106.80 -0.59 2.18 16 11 C -0.46 -12.25 9.04 -37.85 -0.34 -12.59 16 12 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 13 C 0.07 1.79 5.27 -17.34 -0.09 1.70 16 14 N -0.80 -20.98 10.85 55.55 0.60 -20.38 16 15 Si 0.91 18.87 29.57 -169.99 -5.03 13.84 16 16 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 20 C -0.08 -1.88 8.57 -39.79 -0.34 -2.22 16 21 N -0.51 -6.49 4.36 -229.59 -1.00 -7.49 16 22 C 0.05 0.65 3.85 -3.73 -0.01 0.63 16 23 C -0.08 -0.91 5.95 -27.92 -0.17 -1.08 16 24 C -0.06 -0.71 5.77 -104.59 -0.60 -1.31 16 25 C -0.12 -1.25 9.66 -39.44 -0.38 -1.63 16 26 C -0.12 -1.12 10.05 -39.65 -0.40 -1.51 16 27 C -0.13 -1.13 10.05 -39.66 -0.40 -1.53 16 28 C -0.12 -1.11 9.65 -39.48 -0.38 -1.49 16 29 C -0.08 -0.85 5.79 -104.67 -0.61 -1.46 16 30 C 0.09 0.95 5.08 -5.16 -0.03 0.93 16 31 H 0.06 0.52 6.77 -51.93 -0.35 0.17 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.73 6.62 -51.93 -0.34 0.38 16 34 H 0.39 5.18 8.82 -40.82 -0.36 4.82 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.12 3.23 6.27 -52.48 -0.33 2.90 16 37 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 38 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.10 2.28 6.49 -52.49 -0.34 1.94 16 40 H 0.10 1.48 5.97 -51.93 -0.31 1.17 16 41 H 0.03 0.39 7.12 -51.93 -0.37 0.02 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.09 0.82 8.13 -51.93 -0.42 0.39 16 49 H 0.05 0.44 6.64 -51.93 -0.34 0.10 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -31.11 389.78 -12.40 -43.51 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.94 Total: 11.45 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -5.92 Total: -24.97 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: -0.45 Total: -39.02 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.11 -12.40 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025410375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.438 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds