Wall clock time and date at job start Tue Mar 31 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48500 * 109.46663 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47251 * 300.00223 * 3 2 1 6 6 H 1.48494 * 109.47145 * 60.00364 * 3 2 1 7 7 C 1.38810 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99868 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.76194 * 100.00072 * 174.37640 * 9 7 2 11 11 C 1.39110 * 120.19336 * 351.55175 * 10 9 7 12 12 C 1.37912 * 120.05553 * 180.02562 * 11 10 9 13 13 C 1.38658 * 120.43896 * 359.97438 * 12 11 10 14 14 C 1.37799 * 120.38527 * 359.97438 * 13 12 11 15 15 C 1.39689 * 119.93593 * 0.02607 * 14 13 12 16 16 C 1.47400 * 120.21553 * 179.97438 * 15 14 13 17 17 O 1.21626 * 120.00208 * 179.97438 * 16 15 14 18 18 N 1.34776 * 119.99890 * 359.97438 * 16 15 14 19 19 C 1.39948 * 119.99932 * 185.45241 * 18 16 15 20 20 C 1.38893 * 120.04154 * 214.21872 * 19 18 16 21 21 C 1.38108 * 119.97723 * 179.79095 * 20 19 18 22 22 C 1.38470 * 120.05475 * 0.46186 * 21 20 19 23 23 F 1.35101 * 119.95224 * 179.76980 * 22 21 20 24 24 C 1.38565 * 120.08477 * 359.78834 * 22 21 20 25 25 Cl 1.73599 * 119.98485 * 179.97438 * 24 22 21 26 26 C 1.38224 * 120.02373 * 359.97438 * 24 22 21 27 27 H 0.97001 * 120.00140 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.96927 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.77716 * 179.70104 * 12 11 10 30 30 H 1.07999 * 119.80271 * 179.97438 * 13 12 11 31 31 H 1.07998 * 120.02970 * 180.02562 * 14 13 12 32 32 H 0.96994 * 120.00249 * 5.44501 * 18 16 15 33 33 H 1.08003 * 120.01139 * 0.02562 * 20 19 18 34 34 H 1.07993 * 119.97204 * 180.21143 * 21 20 19 35 35 H 1.08004 * 120.02651 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0095 -1.2022 -0.0005 8 1 3.0895 -1.2022 -0.0010 9 16 1.1286 -2.7280 -0.0005 10 6 2.4710 -3.8564 -0.1713 11 6 3.7526 -3.3842 -0.4353 12 6 4.8012 -4.2700 -0.5690 13 6 4.5888 -5.6343 -0.4415 14 6 3.3270 -6.1218 -0.1791 15 6 2.2534 -5.2388 -0.0407 16 6 0.9009 -5.7536 0.2395 17 8 -0.0309 -4.9813 0.3597 18 7 0.6969 -7.0801 0.3625 19 6 -0.6025 -7.5771 0.5145 20 6 -0.8307 -8.6969 1.3039 21 6 -2.1141 -9.1836 1.4565 22 6 -3.1724 -8.5620 0.8155 23 9 -4.4264 -9.0426 0.9624 24 6 -2.9468 -7.4478 0.0231 25 17 -4.2754 -6.6708 -0.7799 26 6 -1.6643 -6.9549 -0.1280 27 1 -0.4850 0.8400 -0.0004 28 1 3.9265 -2.3229 -0.5356 29 1 5.7934 -3.8987 -0.7787 30 1 5.4174 -6.3187 -0.5486 31 1 3.1682 -7.1854 -0.0805 32 1 1.4506 -7.6904 0.3455 33 1 -0.0053 -9.1845 1.8013 34 1 -2.2920 -10.0522 2.0731 35 1 -1.4885 -6.0862 -0.7453 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029490301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:46 Heat of formation + Delta-G solvation = -26.188843 kcal Electronic energy + Delta-G solvation = -24514.778449 eV Core-core repulsion = 20544.549679 eV Total energy + Delta-G solvation = -3970.228769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 351.024 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.97960 -40.52330 -38.75359 -37.50245 -36.56448 -34.53337 -32.84877 -31.21100 -30.97840 -30.40975 -28.86585 -25.92340 -24.15363 -23.38712 -22.39007 -21.88549 -20.34351 -18.65968 -17.95885 -17.54454 -17.13828 -16.54813 -15.91383 -15.75004 -15.28049 -15.05369 -14.77313 -14.62720 -14.17003 -13.93003 -13.80463 -13.48928 -13.33013 -13.09442 -13.04079 -12.91811 -12.21327 -11.81493 -11.72220 -11.53189 -11.33343 -11.27638 -11.02400 -11.00252 -10.42491 -10.18945 -9.96374 -9.82934 -9.60109 -9.04712 -8.84997 -8.51969 -8.22600 -8.11949 -6.66483 -6.55504 -4.27002 0.77857 0.95439 1.39014 1.89620 1.96006 3.03484 3.04882 3.06614 3.12619 3.15709 3.32585 3.48943 3.97653 4.02077 4.33162 4.48667 4.81264 4.86291 4.92230 5.01631 5.13823 5.15595 5.27900 5.49181 5.51297 5.77236 5.79628 5.93254 5.98275 6.08856 6.23304 6.25194 6.46375 6.69169 6.75960 6.89734 7.01478 7.34345 7.46716 7.50622 8.07170 8.42357 8.90968 10.47754 Molecular weight = 351.02amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.003255 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.920617 B = 8601.320048 C =10694.982332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.084 3.916 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.596 4.596 8 H 0.093 0.907 9 S 0.192 5.808 10 C -0.056 4.056 11 C -0.150 4.150 12 C -0.073 4.073 13 C -0.185 4.185 14 C -0.059 4.059 15 C -0.183 4.183 16 C 0.550 3.450 17 O -0.486 6.486 18 N -0.679 5.679 19 C 0.170 3.830 20 C -0.122 4.122 21 C -0.121 4.121 22 C 0.080 3.920 23 F -0.132 7.132 24 C -0.049 4.049 25 Cl -0.046 7.046 26 C -0.088 4.088 27 H 0.276 0.724 28 H 0.140 0.860 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.410 0.590 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -17.736 0.492 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.127 4.127 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.743 4.743 8 H 0.110 0.890 9 S 0.458 5.542 10 C -0.177 4.177 11 C -0.175 4.175 12 C -0.096 4.096 13 C -0.210 4.210 14 C -0.079 4.079 15 C -0.198 4.198 16 C 0.342 3.658 17 O -0.361 6.361 18 N -0.326 5.326 19 C 0.074 3.926 20 C -0.143 4.143 21 C -0.140 4.140 22 C 0.059 3.941 23 F -0.110 7.110 24 C -0.077 4.077 25 Cl -0.017 7.017 26 C -0.109 4.109 27 H 0.086 0.914 28 H 0.157 0.843 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.247 0.753 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.957 -16.766 0.610 16.805 hybrid contribution 2.059 0.880 -0.156 2.245 sum 1.103 -15.887 0.454 15.931 Atomic orbital electron populations 1.69973 1.06262 1.28557 1.43883 1.25120 0.94993 0.99751 0.92886 0.86075 0.79949 0.81125 0.78278 1.19088 1.20147 1.20141 1.24081 0.97072 0.93857 1.59279 0.88961 1.84700 1.02264 0.93171 1.74035 1.23092 1.00942 0.96860 0.96787 1.21450 0.91724 1.00962 1.03389 1.21122 0.98198 0.93377 0.96900 1.20641 0.96422 0.95351 1.08549 1.20877 0.92620 0.97343 0.97069 1.18868 0.91990 0.92860 1.16106 1.18518 0.89632 0.80804 0.76874 1.90834 1.43338 1.54739 1.47230 1.43541 1.06150 1.08495 1.74372 1.17564 0.85412 0.94340 0.95310 1.20840 0.97121 0.97677 0.98668 1.20825 0.90948 1.01315 1.00947 1.17328 0.80424 0.95085 1.01225 1.91515 1.37853 1.87249 1.94392 1.20782 0.90794 0.95792 1.00372 1.98395 1.45374 1.79966 1.77995 1.21056 0.89096 1.01242 0.99514 0.91403 0.84258 0.86850 0.86885 0.87112 0.75278 0.84115 0.83625 0.82382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.99 13.22 55.49 0.73 -23.26 16 2 C 0.08 2.23 5.49 -17.46 -0.10 2.14 16 3 Si 0.92 20.11 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.60 -15.83 8.98 30.94 0.28 -15.55 16 8 H 0.09 2.32 5.03 -52.49 -0.26 2.06 16 9 S 0.19 4.91 18.56 -107.50 -2.00 2.91 16 10 C -0.06 -1.21 6.14 -38.39 -0.24 -1.44 16 11 C -0.15 -2.94 9.20 -39.38 -0.36 -3.31 16 12 C -0.07 -1.16 10.03 -39.55 -0.40 -1.55 16 13 C -0.19 -2.57 10.02 -39.59 -0.40 -2.97 16 14 C -0.06 -0.83 9.53 -39.20 -0.37 -1.20 16 15 C -0.18 -3.28 5.89 -104.75 -0.62 -3.90 16 16 C 0.55 9.66 7.47 -12.53 -0.09 9.57 16 17 O -0.49 -10.40 11.54 5.25 0.06 -10.34 16 18 N -0.68 -8.65 5.28 -10.83 -0.06 -8.71 16 19 C 0.17 2.17 6.26 -83.69 -0.52 1.64 16 20 C -0.12 -1.18 9.96 -39.39 -0.39 -1.57 16 21 C -0.12 -1.18 10.02 -39.54 -0.40 -1.57 16 22 C 0.08 0.99 7.27 -39.38 -0.29 0.71 16 23 F -0.13 -1.67 16.83 2.25 0.04 -1.63 16 24 C -0.05 -0.69 6.32 -39.47 -0.25 -0.94 16 25 Cl -0.05 -0.66 28.61 -51.86 -1.48 -2.14 16 26 C -0.09 -1.30 8.43 -39.36 -0.33 -1.63 16 27 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.14 2.87 5.09 -52.48 -0.27 2.60 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.11 1.08 6.42 -52.49 -0.34 0.74 16 32 H 0.41 3.71 6.87 -40.82 -0.28 3.43 16 33 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 34 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.16 2.68 6.50 -52.48 -0.34 2.34 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -30.59 336.39 -9.45 -40.04 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -2.32 Total: 4.56 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -4.47 Total: -21.58 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.68 Total: -31.97 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.06 Total: -10.34 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -2.00 Total: 2.91 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.48 Total: -2.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.59 -9.45 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029490301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.847 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds