Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38263 * 119.99075 * 2 1 4 4 C 1.38218 * 120.02450 * 179.72722 * 3 2 1 5 5 C 1.38237 * 120.01346 * 0.55242 * 4 3 2 6 6 S 1.76202 * 120.00737 * 179.75120 * 5 4 3 7 7 O 1.42102 * 106.40273 * 2.59461 * 6 5 4 8 8 O 1.42103 * 106.39933 * 229.67978 * 6 5 4 9 9 N 1.65596 * 107.22024 * 116.13691 * 6 5 4 10 10 C 1.38856 * 119.99903 * 296.77808 * 9 6 5 11 11 C 1.39567 * 119.84184 * 133.27886 * 10 9 6 12 12 C 1.36339 * 120.16150 * 180.25202 * 11 10 9 13 13 C 1.40888 * 119.83569 * 359.50600 * 12 11 10 14 14 C 1.41138 * 120.15425 * 180.24872 * 13 12 11 15 15 H 1.07998 * 120.00132 * 28.44031 * 14 13 12 16 16 C 1.39863 * 119.99891 * 208.43595 * 14 13 12 17 17 N 1.30909 * 120.00039 * 13.53822 * 16 14 13 18 18 Si 1.86801 * 120.00303 * 193.53857 * 16 14 13 19 19 H 1.48505 * 109.46831 * 59.99796 * 18 16 14 20 20 H 1.48494 * 109.47175 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46733 * 300.00263 * 18 16 14 22 22 C 1.40882 * 119.68776 * 0.46963 * 13 12 11 23 23 C 1.36341 * 119.83932 * 359.78051 * 22 13 12 24 24 C 1.38333 * 119.98673 * 359.47136 * 5 4 3 25 25 Cl 1.73591 * 120.01501 * 180.27511 * 24 5 4 26 26 C 1.38193 * 119.99426 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47179 * 269.97161 * 1 2 3 28 28 H 1.08993 * 109.47476 * 29.97584 * 1 2 3 29 29 H 1.09000 * 109.46995 * 149.97317 * 1 2 3 30 30 H 1.08006 * 119.98704 * 0.02752 * 3 2 1 31 31 H 1.08000 * 119.99598 * 180.30050 * 4 3 2 32 32 H 0.96999 * 119.99797 * 116.77625 * 9 6 5 33 33 H 1.08004 * 119.91755 * 359.97438 * 11 10 9 34 34 H 1.07997 * 120.08057 * 179.74543 * 12 11 10 35 35 H 0.97001 * 119.99788 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.08211 * 179.75618 * 22 13 12 37 37 H 1.07998 * 119.92438 * 179.97438 * 23 22 13 38 38 H 1.07997 * 120.00890 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1983 0.0057 5 6 4.2725 0.0018 -0.0001 6 16 6.0346 0.0030 0.0005 7 8 6.4348 1.3648 0.0693 8 8 6.4368 -0.8735 -1.0432 9 7 6.5248 -0.7006 1.4171 10 6 6.2120 -0.1060 2.6323 11 6 5.6959 -0.8808 3.6721 12 6 5.3817 -0.3028 4.8663 13 6 5.5888 1.0783 5.0526 14 6 5.2708 1.6826 6.2878 15 1 5.3144 1.1045 7.1989 16 6 4.8994 3.0303 6.3318 17 7 4.5890 3.6602 5.2269 18 14 4.8461 3.9316 7.9671 19 1 6.1950 3.9108 8.5879 20 1 4.4251 5.3380 7.7437 21 1 3.8753 3.2622 8.8698 22 6 6.1106 1.8540 3.9986 23 6 6.4155 1.2635 2.8082 24 6 3.5816 -1.1967 -0.0006 25 17 4.4501 -2.6997 -0.0007 26 6 2.1979 -1.1969 -0.0005 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 1.6578 2.1327 0.0004 31 1 4.1197 2.1340 0.0106 32 1 7.0305 -1.5281 1.3980 33 1 5.5409 -1.9400 3.5290 34 1 4.9786 -0.9028 5.6687 35 1 4.3310 4.5947 5.2576 36 1 6.2682 2.9139 4.1332 37 1 6.8151 1.8570 1.9992 38 1 1.6580 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029967306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = -37.339160 kcal Electronic energy + Delta-G solvation = -26281.600982 eV Core-core repulsion = 22434.349004 eV Total energy + Delta-G solvation = -3847.251978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 351.048 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -39.46249 -38.07599 -36.96017 -36.50643 -35.50787 -34.80403 -33.03817 -32.83041 -30.88744 -29.58636 -28.74815 -27.46242 -24.76407 -22.99468 -22.04852 -21.26548 -20.92580 -19.20811 -17.82105 -17.40602 -17.15777 -16.67196 -15.87201 -15.76975 -15.25183 -14.66214 -14.40361 -14.18048 -14.06116 -13.93040 -13.54762 -12.99984 -12.81810 -12.60369 -12.46650 -12.32496 -12.24686 -11.75540 -11.70917 -11.65436 -11.50454 -11.44188 -11.42330 -11.23327 -11.15160 -10.82384 -10.62761 -10.53460 -10.17791 -9.80208 -9.33415 -9.19388 -8.95167 -8.84793 -7.65583 -7.18608 -6.83514 -4.42070 0.57319 0.84347 1.13977 1.90543 2.65376 3.00226 3.02581 3.04420 3.11968 3.21493 3.47288 3.86520 4.01641 4.49533 4.53625 4.59680 4.83371 4.98524 5.18971 5.36640 5.37921 5.46107 5.55268 5.67814 5.79906 5.88172 6.01392 6.13037 6.18640 6.28531 6.36296 6.66631 6.90624 6.96427 7.10708 7.13181 7.40560 7.54009 7.83559 7.95652 8.05575 8.17735 8.53525 8.78064 8.86673 10.10565 Molecular weight = 351.05amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.004037 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.048933 B = 6934.987666 C = 7823.335281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.025 4.025 3 C -0.137 4.137 4 C 0.004 3.996 5 C -0.665 4.665 6 S 2.675 3.325 7 O -0.951 6.951 8 O -0.965 6.965 9 N -1.024 6.024 10 C -0.010 4.010 11 C -0.085 4.085 12 C -0.215 4.215 13 C 0.112 3.888 14 C -0.455 4.455 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.791 5.791 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.147 4.147 23 C -0.117 4.117 24 C 0.063 3.937 25 Cl -0.050 7.050 26 C -0.136 4.136 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.283 0.717 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 -5.513 -8.571 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.026 4.026 3 C -0.156 4.156 4 C -0.015 4.015 5 C -0.750 4.750 6 S 2.766 3.234 7 O -0.941 6.941 8 O -0.955 6.955 9 N -0.777 5.777 10 C -0.106 4.106 11 C -0.107 4.107 12 C -0.236 4.236 13 C 0.109 3.891 14 C -0.484 4.484 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.416 5.416 18 Si 0.736 3.264 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.168 4.168 23 C -0.138 4.138 24 C 0.035 3.965 25 Cl -0.021 7.021 26 C -0.156 4.156 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.170 0.830 32 H 0.248 0.752 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.952 -4.955 -9.428 12.201 hybrid contribution -0.636 -0.259 1.101 1.298 sum -6.588 -5.214 -8.327 11.829 Atomic orbital electron populations 1.20919 0.90094 1.03351 1.03320 1.20130 0.96570 0.92571 0.93332 1.21262 0.94211 0.98152 1.01936 1.20995 0.94603 0.96558 0.89385 1.30939 1.28757 0.97378 1.17935 1.02951 0.73514 0.74158 0.72770 1.93545 1.79961 1.34519 1.86094 1.93571 1.81268 1.66344 1.54308 1.52288 1.66562 1.39008 1.19862 1.16789 1.15111 0.92569 0.86157 1.20304 0.98955 0.97377 0.94027 1.20665 1.10023 0.96010 0.96899 1.17732 0.87479 0.90876 0.93063 1.19560 1.39677 0.94746 0.94466 0.90306 1.25934 0.92618 0.97685 0.98211 1.69824 1.31241 1.11737 1.28792 0.86317 0.79848 0.78334 0.81950 1.18747 1.20268 1.19024 1.20993 1.02434 1.00391 0.92942 1.21164 1.00726 0.93007 0.98891 1.20351 0.92758 0.86118 0.97257 1.98414 1.75911 1.31467 1.96295 1.20945 0.91716 0.98937 1.03960 0.90003 0.90748 0.90986 0.84504 0.83004 0.75241 0.88955 0.88604 0.90625 0.85964 0.85843 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.03 -0.31 5.88 -104.63 -0.62 -0.93 16 3 C -0.14 -1.83 9.70 -39.58 -0.38 -2.21 16 4 C 0.00 0.06 9.55 -39.59 -0.38 -0.32 16 5 C -0.67 -11.32 5.80 -39.55 -0.23 -11.55 16 6 S 2.68 48.52 4.96 -107.50 -0.53 47.98 16 7 O -0.95 -19.21 14.00 -57.17 -0.80 -20.01 16 8 O -0.96 -18.11 16.61 -57.17 -0.95 -19.06 16 9 N -1.02 -18.29 5.41 32.51 0.18 -18.11 16 10 C -0.01 -0.22 6.16 -83.69 -0.52 -0.73 16 11 C -0.08 -1.78 9.90 -39.77 -0.39 -2.17 16 12 C -0.22 -4.96 9.74 -39.26 -0.38 -5.34 16 13 C 0.11 2.83 5.55 -106.79 -0.59 2.23 16 14 C -0.45 -11.44 9.04 -37.87 -0.34 -11.78 16 15 H 0.08 1.89 7.88 -52.49 -0.41 1.48 16 16 C 0.07 1.77 5.20 -17.34 -0.09 1.68 16 17 N -0.79 -19.55 10.95 55.54 0.61 -18.94 16 18 Si 0.91 17.88 29.58 -169.99 -5.03 12.85 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 C -0.15 -3.69 8.60 -39.26 -0.34 -4.03 16 23 C -0.12 -2.70 9.12 -39.77 -0.36 -3.06 16 24 C 0.06 0.99 6.30 -39.50 -0.25 0.74 16 25 Cl -0.05 -0.74 26.46 -51.86 -1.37 -2.11 16 26 C -0.14 -1.81 9.49 -39.55 -0.38 -2.18 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.15 2.33 7.34 -52.49 -0.39 1.95 16 32 H 0.41 6.27 8.95 -34.46 -0.31 5.97 16 33 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.28 6.38 8.30 -40.82 -0.34 6.05 16 36 H 0.12 3.17 6.27 -52.49 -0.33 2.84 16 37 H 0.12 2.82 5.68 -52.49 -0.30 2.52 16 38 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -29.29 350.27 -11.33 -40.62 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -3.82 Total: 11.82 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: -4.89 Total: -40.32 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.78 Total: -37.05 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -1.75 Total: -39.07 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 48.52 SS G_CDS: -0.53 Total: 47.98 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.37 Total: -2.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.29 -11.33 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029967306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.285 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds