Wall clock time and date at job start Tue Mar 31 2020 04:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86798 * 119.99852 * 2 1 4 4 H 1.48506 * 109.47490 * 270.27578 * 3 2 1 5 5 H 1.48497 * 109.47211 * 30.27363 * 3 2 1 6 6 H 1.48500 * 109.47246 * 150.27386 * 3 2 1 7 7 C 1.38929 * 120.00177 * 180.27556 * 2 1 3 8 8 H 1.08001 * 120.00111 * 160.12833 * 7 2 1 9 9 N 1.37068 * 119.99887 * 340.13156 * 7 2 1 10 10 C 1.39977 * 119.71320 * 317.35335 * 9 7 2 11 11 C 1.39064 * 129.84107 * 0.66720 * 10 9 7 12 12 C 1.33063 * 115.58521 * 179.62296 * 11 10 9 13 13 S 1.70429 * 111.30878 * 359.74203 * 12 11 10 14 14 C 1.38466 * 118.11383 * 179.78271 * 10 9 7 15 15 C 1.41899 * 119.26246 * 0.51468 * 14 10 9 16 16 O 1.21801 * 120.20880 * 179.74557 * 15 14 10 17 17 N 1.34654 * 119.58854 * 359.72009 * 15 14 10 18 18 C 1.40295 * 119.61666 * 179.97438 * 17 15 14 19 19 C 1.38778 * 120.05391 * 270.02821 * 18 17 15 20 20 C 1.38137 * 119.98450 * 180.02562 * 19 18 17 21 21 C 1.38487 * 120.08251 * 359.97438 * 20 19 18 22 22 F 1.35094 * 119.94612 * 180.02562 * 21 20 19 23 23 C 1.38454 * 120.10174 * 0.02897 * 21 20 19 24 24 C 1.38312 * 120.01893 * 359.67650 * 23 21 20 25 25 F 1.35099 * 120.04282 * 180.32288 * 24 23 21 26 26 C 1.34231 * 119.71894 * 137.63380 * 9 7 2 27 27 O 1.21588 * 119.14916 * 359.97438 * 26 9 7 28 28 H 0.97002 * 120.00010 * 359.72513 * 1 2 3 29 29 H 1.07996 * 122.20657 * 359.35039 * 11 10 9 30 30 H 1.08003 * 124.34016 * 179.75487 * 12 11 10 31 31 H 1.08004 * 120.00831 * 359.97357 * 19 18 17 32 32 H 1.07997 * 119.95684 * 179.97438 * 20 19 18 33 33 H 1.08007 * 119.98770 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4896 2.0499 -1.4001 5 1 1.4482 2.6510 0.7058 6 1 3.5483 1.4386 0.6942 7 6 2.0086 -1.2031 -0.0058 8 1 3.0404 -1.2294 -0.3238 9 7 1.3845 -2.3568 0.3921 10 6 0.5596 -2.3448 1.5229 11 6 0.2255 -1.2945 2.3709 12 6 -0.5993 -1.6017 3.3689 13 16 -1.0371 -3.2483 3.3259 14 6 -0.0581 -3.5277 1.8925 15 6 0.1732 -4.6997 1.1268 16 8 -0.3577 -5.7505 1.4391 17 7 0.9828 -4.6429 0.0523 18 6 1.2124 -5.8014 -0.7049 19 6 2.2676 -6.6437 -0.3840 20 6 2.4927 -7.7837 -1.1309 21 6 1.6660 -8.0879 -2.1995 22 9 1.8883 -9.2038 -2.9277 23 6 0.6123 -7.2500 -2.5228 24 6 0.3794 -6.1106 -1.7741 25 9 -0.6526 -5.2962 -2.0850 26 6 1.5740 -3.4896 -0.3027 27 8 2.2996 -3.4717 -1.2781 28 1 -0.4850 0.8400 0.0040 29 1 0.6135 -0.2963 2.2314 30 1 -0.9469 -0.8979 4.1107 31 1 2.9133 -6.4074 0.4489 32 1 3.3143 -8.4387 -0.8810 33 1 -0.0310 -7.4888 -3.3569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032096146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:24 Heat of formation + Delta-G solvation = -55.336082 kcal Electronic energy + Delta-G solvation = -28526.467796 eV Core-core repulsion = 24088.524300 eV Total energy + Delta-G solvation = -4437.943496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 350.032 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.05876 -48.84045 -41.69413 -38.96831 -38.05720 -37.31163 -34.69852 -34.15343 -32.63084 -30.95535 -30.01273 -28.50093 -25.65528 -24.70444 -23.28768 -22.80839 -22.62386 -20.46587 -19.59366 -18.62856 -18.21063 -17.41541 -17.25723 -16.41340 -16.01339 -15.90813 -15.89165 -15.55044 -15.20084 -15.05962 -14.52102 -14.39985 -14.19643 -14.04729 -13.67417 -13.56471 -13.33734 -13.13303 -12.64903 -12.35052 -12.01347 -11.98113 -11.75234 -11.60911 -11.37791 -11.15386 -10.70618 -10.42844 -10.07196 -9.81534 -9.57984 -9.46053 -9.10535 -8.96962 -8.67626 -8.24951 -7.25579 -6.76924 -4.65381 0.84327 1.00368 1.03758 1.93254 2.50614 2.76960 2.90537 2.96448 3.01754 3.02143 3.10665 3.30224 3.76275 3.82835 4.09207 4.21960 4.35647 4.55276 4.65229 4.80956 5.14172 5.25279 5.28535 5.57434 5.70379 5.72626 5.82274 5.93275 6.08228 6.19291 6.39177 6.53542 6.63846 6.78230 6.97452 7.07704 7.72855 7.90857 8.21900 8.44003 8.64638 9.15992 10.15503 Molecular weight = 350.03amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004520 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.676490 B = 6192.838344 C = 7548.349161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.052 3.948 3 Si 0.931 3.069 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.343 4.343 8 H 0.113 0.887 9 N -0.337 5.337 10 C 0.252 3.748 11 C -0.102 4.102 12 C -0.216 4.216 13 S 0.212 5.788 14 C -0.396 4.396 15 C 0.592 3.408 16 O -0.540 6.540 17 N -0.513 5.513 18 C 0.113 3.887 19 C -0.039 4.039 20 C -0.156 4.156 21 C 0.134 3.866 22 F -0.131 7.131 23 C -0.188 4.188 24 C 0.155 3.845 25 F -0.119 7.119 26 C 0.663 3.337 27 O -0.545 6.545 28 H 0.282 0.718 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -6.135 3.626 7.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.159 4.159 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.470 4.470 8 H 0.130 0.870 9 N -0.043 5.043 10 C 0.133 3.867 11 C -0.136 4.136 12 C -0.354 4.354 13 S 0.474 5.526 14 C -0.518 4.518 15 C 0.391 3.609 16 O -0.419 6.419 17 N -0.256 5.256 18 C 0.022 3.978 19 C -0.058 4.058 20 C -0.176 4.176 21 C 0.114 3.886 22 F -0.110 7.110 23 C -0.208 4.208 24 C 0.134 3.866 25 F -0.097 7.097 26 C 0.369 3.631 27 O -0.420 6.420 28 H 0.093 0.907 29 H 0.166 0.834 30 H 0.185 0.815 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.087 -7.409 3.979 8.410 hybrid contribution 0.839 1.994 -1.347 2.548 sum 0.926 -5.415 2.632 6.091 Atomic orbital electron populations 1.70009 1.06374 1.29462 1.40775 1.25648 0.95426 1.00722 0.94130 0.85865 0.79835 0.79416 0.79480 1.19404 1.19942 1.18403 1.19650 0.96949 0.81367 1.49024 0.86983 1.40512 1.38025 1.07707 1.18041 1.18345 0.90553 0.91915 0.85910 1.19374 1.00612 1.00098 0.93548 1.24906 1.04493 1.02095 1.03954 1.82364 1.46888 1.01160 1.22147 1.22867 1.20502 0.97007 1.11470 1.15847 0.78004 0.88288 0.78791 1.90792 1.50152 1.31524 1.69398 1.43818 1.45568 1.08501 1.27676 1.17331 0.97383 0.89259 0.93819 1.20948 0.94646 0.91747 0.98504 1.20981 1.01551 0.99063 0.95978 1.17239 0.95615 0.83998 0.91706 1.91519 1.94115 1.49207 1.76118 1.20856 1.01120 0.95182 1.03604 1.17427 0.86019 0.89171 0.94009 1.91567 1.55138 1.71058 1.91921 1.16269 0.83364 0.80002 0.83417 1.90877 1.40821 1.83581 1.26715 0.90719 0.83420 0.81518 0.83600 0.83332 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.28 11.17 55.49 0.62 -19.66 16 2 C 0.05 1.22 3.60 -17.48 -0.06 1.15 16 3 Si 0.93 17.75 29.59 -169.99 -5.03 12.72 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.34 -8.58 8.60 -14.95 -0.13 -8.71 16 8 H 0.11 2.81 7.81 -52.49 -0.41 2.40 16 9 N -0.34 -8.43 2.72 -64.22 -0.17 -8.60 16 10 C 0.25 5.74 5.93 -83.75 -0.50 5.25 16 11 C -0.10 -2.03 8.12 -41.07 -0.33 -2.36 16 12 C -0.22 -3.52 10.86 28.93 0.31 -3.21 16 13 S 0.21 3.62 23.08 -107.50 -2.48 1.14 16 14 C -0.40 -8.64 6.48 -38.10 -0.25 -8.88 16 15 C 0.59 13.55 7.42 -14.91 -0.11 13.44 16 16 O -0.54 -12.66 17.06 5.10 0.09 -12.58 16 17 N -0.51 -11.66 2.43 -67.40 -0.16 -11.82 16 18 C 0.11 2.26 3.71 -83.49 -0.31 1.95 16 19 C -0.04 -0.63 9.96 -39.42 -0.39 -1.02 16 20 C -0.16 -2.04 10.02 -39.53 -0.40 -2.44 16 21 C 0.13 1.83 7.30 -39.41 -0.29 1.54 16 22 F -0.13 -1.66 17.26 2.25 0.04 -1.62 16 23 C -0.19 -2.80 10.00 -39.47 -0.39 -3.19 16 24 C 0.15 2.92 7.31 -39.26 -0.29 2.64 16 25 F -0.12 -2.47 17.08 2.25 0.04 -2.43 16 26 C 0.66 16.60 8.03 -87.77 -0.70 15.90 16 27 O -0.55 -14.52 16.02 5.29 0.08 -14.44 16 28 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 29 H 0.15 2.98 6.10 -52.49 -0.32 2.66 16 30 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 31 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 32 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -30.01 319.52 -7.56 -37.57 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -1.56 Total: 2.87 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: -3.84 Total: 12.04 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.28 Total: -40.09 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.17 Total: -27.02 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.48 Total: 1.14 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.01 -7.56 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032096146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.765 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds