Wall clock time and date at job start Tue Mar 31 2020 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37805 * 119.69825 * 2 1 4 4 N 1.32567 * 122.46941 * 0.02562 * 3 2 1 5 5 C 1.32036 * 120.51281 * 179.97438 * 4 3 2 6 6 C 1.50697 * 118.59573 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.46778 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46655 * 299.97347 * 6 5 4 9 9 C 1.52996 * 109.47226 * 59.97689 * 6 5 4 10 10 N 1.31749 * 122.80628 * 359.97438 * 5 4 3 11 11 C 1.33426 * 121.10850 * 359.97438 * 10 5 4 12 12 S 1.76201 * 120.98589 * 179.97438 * 11 10 5 13 13 C 1.76190 * 100.00172 * 0.02562 * 12 11 10 14 14 H 1.08001 * 120.00343 * 0.02562 * 13 12 11 15 15 C 1.38874 * 120.00011 * 179.97438 * 13 12 11 16 16 N 1.31496 * 120.00032 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00047 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47063 * 89.99474 * 17 15 13 19 19 H 1.48501 * 109.47371 * 209.99625 * 17 15 13 20 20 H 1.48495 * 109.46979 * 329.99687 * 17 15 13 21 21 C 1.40314 * 118.01954 * 0.02562 * 11 10 5 22 22 C 1.46647 * 122.69774 * 180.26136 * 21 11 10 23 23 O 1.21647 * 120.96932 * 359.97438 * 22 21 11 24 24 N 1.35217 * 118.06224 * 180.18245 * 22 21 11 25 25 C 1.46506 * 119.42411 * 179.82296 * 24 22 21 26 26 C 1.34243 * 121.14549 * 359.54378 * 24 22 21 27 27 O 1.21559 * 118.54508 * 180.27806 * 26 24 22 28 28 H 1.09001 * 109.47513 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47353 * 300.02737 * 1 2 3 30 30 H 1.09001 * 109.47012 * 60.02334 * 1 2 3 31 31 H 1.08995 * 109.47408 * 59.99963 * 7 6 5 32 32 H 1.08999 * 109.46656 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47071 * 299.99443 * 7 6 5 34 34 H 1.08997 * 109.47013 * 60.00572 * 8 6 5 35 35 H 1.09008 * 109.46273 * 180.02562 * 8 6 5 36 36 H 1.08995 * 109.47587 * 300.00071 * 8 6 5 37 37 H 1.08999 * 109.47053 * 60.00353 * 9 6 5 38 38 H 1.08999 * 109.46728 * 179.97438 * 9 6 5 39 39 H 1.08997 * 109.46859 * 299.99679 * 9 6 5 40 40 H 0.97001 * 119.99898 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47060 * 179.73088 * 25 24 22 42 42 H 1.09004 * 109.47073 * 299.72576 * 25 24 22 43 43 H 1.09000 * 109.47212 * 59.72659 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1478 1.1970 0.0000 4 7 1.5288 2.3693 0.0005 5 6 2.2218 3.4933 0.0010 6 6 1.4740 4.8016 0.0021 7 6 2.4734 5.9602 0.0032 8 6 0.5948 4.8875 -1.2471 9 6 0.5948 4.8855 1.2514 10 7 3.5390 3.5197 0.0015 11 6 4.2512 2.3915 0.0021 12 16 6.0127 2.4306 0.0021 13 6 6.2801 4.1721 0.0020 14 1 5.4376 4.8479 0.0024 15 6 7.5742 4.6760 0.0025 16 7 7.7737 5.9757 0.0020 17 14 9.0315 3.5073 0.0026 18 1 9.4180 3.1980 -1.3975 19 1 10.1761 4.1433 0.7031 20 1 8.6589 2.2516 0.7022 21 6 3.5555 1.1729 0.0015 22 6 4.2345 -0.1269 0.0077 23 8 5.4488 -0.1988 0.0132 24 7 3.4715 -1.2432 0.0028 25 6 4.1187 -2.5575 0.0048 26 6 2.1311 -1.1680 0.0018 27 8 1.4914 -2.2017 0.0025 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5142 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 3.0998 5.9005 -0.8868 32 1 1.9325 6.9065 0.0036 33 1 3.0997 5.8989 0.8931 34 1 -0.1172 4.0622 -1.2478 35 1 0.0543 5.8342 -1.2465 36 1 1.2211 4.8278 -2.1371 37 1 1.2212 4.8243 2.1413 38 1 0.0543 5.8320 1.2524 39 1 -0.1172 4.0601 1.2507 40 1 8.6777 6.3276 0.0020 41 1 3.3573 -3.3375 0.0051 42 1 4.7409 -2.6575 -0.8846 43 1 4.7396 -2.6554 0.8954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032957636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:39 Heat of formation + Delta-G solvation = -3.955203 kcal Electronic energy + Delta-G solvation = -29679.443056 eV Core-core repulsion = 25658.774058 eV Total energy + Delta-G solvation = -4020.668998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.120 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.19372 -40.19787 -38.89057 -37.10468 -35.63099 -35.13070 -32.92965 -32.71006 -31.12659 -28.35039 -27.11077 -27.05730 -26.66983 -26.12734 -24.67868 -24.33112 -22.57784 -21.00108 -18.99014 -18.54945 -18.15983 -17.54389 -17.10919 -16.40736 -15.94982 -15.36581 -15.35028 -15.01773 -14.95002 -14.63836 -14.62939 -14.13715 -13.68860 -13.59399 -13.11800 -13.01109 -12.85758 -12.42970 -12.40335 -12.10735 -12.09029 -11.77412 -11.53485 -11.50681 -11.39042 -11.29384 -11.17003 -11.09751 -10.76684 -10.63107 -10.57598 -10.26683 -10.07425 -9.96468 -9.71117 -9.31612 -8.85824 -8.70280 -8.65344 -7.53631 -6.68397 -4.41500 0.75186 1.32945 1.90577 2.18006 2.37416 2.92190 3.03238 3.13947 3.16292 3.17967 3.90125 3.98820 4.12210 4.17394 4.43863 4.75728 4.79602 5.03410 5.12157 5.18257 5.21565 5.32163 5.33861 5.38550 5.42550 5.47025 5.55279 5.67084 5.69528 5.78390 5.85165 5.98173 5.98347 6.11066 6.15482 6.24227 6.25012 6.32895 6.54431 6.70023 6.89144 7.23577 7.41648 7.55400 7.58230 8.00947 8.45921 8.57901 8.70499 10.38011 Molecular weight = 350.12amu Principal moments of inertia in cm(-1) A = 0.009000 B = 0.005572 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.378950 B = 5023.972185 C = 7932.670210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.526 5.526 3 C 0.457 3.543 4 N -0.582 5.582 5 C 0.395 3.605 6 C 0.002 3.998 7 C -0.127 4.127 8 C -0.132 4.132 9 C -0.132 4.132 10 N -0.515 5.515 11 C 0.193 3.807 12 S 0.193 5.807 13 C -0.557 4.557 14 H 0.131 0.869 15 C 0.104 3.896 16 N -0.840 5.840 17 Si 0.837 3.163 18 H -0.259 1.259 19 H -0.262 1.262 20 H -0.234 1.234 21 C -0.333 4.333 22 C 0.564 3.436 23 O -0.478 6.478 24 N -0.562 5.562 25 C 0.082 3.918 26 C 0.713 3.287 27 O -0.551 6.551 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.279 0.721 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.403 -7.401 0.069 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.252 5.252 3 C 0.213 3.787 4 N -0.310 5.310 5 C 0.120 3.880 6 C -0.001 4.001 7 C -0.185 4.185 8 C -0.190 4.190 9 C -0.190 4.190 10 N -0.235 5.235 11 C -0.060 4.060 12 S 0.449 5.551 13 C -0.705 4.705 14 H 0.149 0.851 15 C -0.110 4.110 16 N -0.472 5.472 17 Si 0.660 3.340 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.158 1.158 21 C -0.357 4.357 22 C 0.357 3.643 23 O -0.351 6.351 24 N -0.307 5.307 25 C -0.059 4.059 26 C 0.415 3.585 27 O -0.426 6.426 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.246 -7.898 0.071 13.742 hybrid contribution 0.285 -0.031 -0.012 0.287 sum -10.961 -7.929 0.059 13.528 Atomic orbital electron populations 1.21886 0.74581 1.04576 1.03818 1.44303 1.09187 1.02288 1.69423 1.18136 0.86832 0.86645 0.87097 1.67632 1.39908 0.96104 1.27391 1.22990 0.87032 0.92233 0.85701 1.19409 0.94700 0.88787 0.97166 1.21707 0.97786 0.94593 1.04421 1.21801 0.99122 1.02087 0.95972 1.21798 0.99121 1.02091 0.95970 1.68929 1.06715 1.27707 1.20172 1.23846 1.02474 0.87874 0.91780 1.83898 0.89560 1.09864 1.71736 1.23530 0.98737 0.91467 1.56739 0.85125 1.24867 0.98280 0.95185 0.92638 1.69856 1.23240 1.11415 1.42661 0.87082 0.83410 0.82680 0.80790 1.18293 1.18584 1.15803 1.19910 0.92718 0.94617 1.28494 1.17925 0.86961 0.82927 0.76520 1.90825 1.11975 1.85788 1.46546 1.46112 1.05498 1.10445 1.68637 1.21898 0.98623 0.81659 1.03766 1.15411 0.81880 0.83467 0.77727 1.90933 1.65281 1.30901 1.55447 0.88477 0.90399 0.90392 0.91459 0.92927 0.91457 0.91718 0.91885 0.92728 0.92730 0.91883 0.91718 0.91071 0.88251 0.90390 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 10.12 59.85 0.61 1.64 16 2 N -0.53 -7.93 3.03 -128.33 -0.39 -8.32 16 3 C 0.46 7.97 7.38 -155.40 -1.15 6.83 16 4 N -0.58 -9.83 9.12 -9.89 -0.09 -9.92 16 5 C 0.39 7.13 6.26 -157.03 -0.98 6.15 16 6 C 0.00 0.03 0.91 -155.66 -0.14 -0.12 16 7 C -0.13 -2.01 7.65 37.16 0.28 -1.73 16 8 C -0.13 -1.63 8.36 37.16 0.31 -1.32 16 9 C -0.13 -1.63 8.36 37.16 0.31 -1.32 16 10 N -0.51 -10.95 7.17 -9.24 -0.07 -11.02 16 11 C 0.19 4.23 7.04 -16.08 -0.11 4.12 16 12 S 0.19 4.56 17.07 -107.50 -1.84 2.72 16 13 C -0.56 -14.70 9.83 30.97 0.30 -14.39 16 14 H 0.13 3.69 6.83 -52.49 -0.36 3.33 16 15 C 0.10 2.72 5.50 -17.46 -0.10 2.63 16 16 N -0.84 -22.84 13.96 55.49 0.77 -22.06 16 17 Si 0.84 18.86 27.74 -169.99 -4.72 14.15 16 18 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.23 -5.17 6.74 56.52 0.38 -4.79 16 21 C -0.33 -6.58 5.90 -104.76 -0.62 -7.20 16 22 C 0.56 10.56 7.62 -12.67 -0.10 10.46 16 23 O -0.48 -9.75 14.43 5.24 0.08 -9.68 16 24 N -0.56 -8.91 2.96 -129.75 -0.38 -9.30 16 25 C 0.08 1.00 10.01 59.85 0.60 1.60 16 26 C 0.71 11.16 8.10 -87.68 -0.71 10.45 16 27 O -0.55 -8.79 14.59 5.31 0.08 -8.72 16 28 H 0.10 1.02 6.79 -51.93 -0.35 0.66 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 34 H 0.06 0.77 7.99 -51.93 -0.42 0.36 16 35 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.77 7.99 -51.93 -0.41 0.36 16 40 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.10 1.10 6.76 -51.93 -0.35 0.75 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -29.39 368.08 -8.18 -37.57 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.69 Total: 1.24 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: -1.49 Total: 17.79 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.15 Total: -60.61 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.15 Total: -18.39 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.72 Total: 14.15 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.84 Total: 2.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.39 -8.18 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032957636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.616 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds