Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31456 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48500 * 109.47298 * 270.00790 * 3 2 1 5 5 H 1.48507 * 109.46826 * 30.00734 * 3 2 1 6 6 H 1.48498 * 109.47132 * 150.00031 * 3 2 1 7 7 C 1.38808 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99659 * 168.88812 * 7 2 1 9 9 N 1.37064 * 120.00166 * 348.88403 * 7 2 1 10 10 C 1.36252 * 124.87791 * 338.52087 * 9 7 2 11 11 C 1.36279 * 109.70550 * 179.97438 * 10 9 7 12 12 C 1.46929 * 126.70706 * 179.73390 * 11 10 9 13 13 N 1.30066 * 120.00726 * 180.02562 * 12 11 10 14 14 N 1.40098 * 120.00684 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00313 * 180.02562 * 14 13 12 16 16 O 1.21628 * 120.00007 * 359.97438 * 15 14 13 17 17 C 1.47670 * 120.00128 * 179.97438 * 15 14 13 18 18 C 1.39676 * 120.12132 * 359.72139 * 17 15 14 19 19 C 1.37837 * 119.87660 * 179.79149 * 18 17 15 20 20 C 1.38655 * 120.11904 * 0.48128 * 19 18 17 21 21 F 1.35099 * 119.87257 * 179.72253 * 20 19 18 22 22 C 1.38655 * 120.24638 * 359.74646 * 20 19 18 23 23 C 1.37833 * 120.12419 * 0.02562 * 22 20 19 24 24 C 1.47582 * 106.59242 * 0.02562 * 11 10 9 25 25 C 1.39192 * 133.90404 * 179.97438 * 24 11 10 26 26 C 1.37906 * 119.67727 * 180.02562 * 25 24 11 27 27 C 1.38672 * 120.29502 * 359.97438 * 26 25 24 28 28 C 1.37928 * 120.60261 * 0.02562 * 27 26 25 29 29 C 1.38334 * 124.87669 * 158.48302 * 9 7 2 30 30 H 0.97001 * 119.99533 * 359.97438 * 1 2 3 31 31 H 1.07996 * 125.15055 * 359.95814 * 10 9 7 32 32 H 1.08003 * 119.99816 * 0.02749 * 12 11 10 33 33 H 0.97005 * 119.99799 * 359.97438 * 14 13 12 34 34 H 1.07999 * 120.06090 * 0.02562 * 18 17 15 35 35 H 1.07997 * 119.93477 * 180.20566 * 19 18 17 36 36 H 1.08000 * 119.93748 * 179.97438 * 22 20 19 37 37 H 1.07993 * 120.05994 * 179.97438 * 23 22 20 38 38 H 1.07992 * 120.16367 * 0.04667 * 25 24 11 39 39 H 1.08000 * 119.85569 * 180.02562 * 26 25 24 40 40 H 1.08000 * 119.69952 * 179.97438 * 27 26 25 41 41 H 1.08004 * 120.03214 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4960 2.0465 -1.4001 5 1 1.4461 2.6526 0.7002 6 1 3.5462 1.4401 0.7000 7 6 2.0085 -1.2022 -0.0005 8 1 3.0734 -1.2109 -0.1808 9 7 1.3424 -2.3781 0.2278 10 6 0.1398 -2.4824 0.8597 11 6 -0.2367 -3.7908 0.9181 12 6 -1.4645 -4.3252 1.5227 13 7 -1.6943 -5.6053 1.5054 14 7 -2.8653 -6.1148 2.0815 15 6 -3.1030 -7.4413 2.0640 16 8 -2.3011 -8.1961 1.5477 17 6 -4.3371 -7.9783 2.6717 18 6 -5.2570 -7.1144 3.2705 19 6 -6.4093 -7.6207 3.8324 20 6 -6.6513 -8.9858 3.8128 21 9 -7.7797 -9.4772 4.3700 22 6 -5.7394 -9.8485 3.2239 23 6 -4.5860 -9.3526 2.6549 24 6 0.8332 -4.5669 0.2616 25 6 1.0275 -5.9221 0.0104 26 6 2.1677 -6.3387 -0.6440 27 6 3.1177 -5.4143 -1.0514 28 6 2.9373 -4.0686 -0.8086 29 6 1.7943 -3.6295 -0.1509 30 1 -0.4849 0.8401 0.0004 31 1 -0.4288 -1.6536 1.2548 32 1 -2.1764 -3.6550 1.9815 33 1 -3.5047 -5.5129 2.4936 34 1 -5.0675 -6.0514 3.2898 35 1 -7.1227 -6.9533 4.2926 36 1 -5.9327 -10.9110 3.2119 37 1 -3.8762 -10.0255 2.1969 38 1 0.2887 -6.6438 0.3260 39 1 2.3211 -7.3895 -0.8407 40 1 4.0073 -5.7512 -1.5627 41 1 3.6833 -3.3567 -1.1296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033714569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = 47.159258 kcal Electronic energy + Delta-G solvation = -28075.945285 eV Core-core repulsion = 23836.702953 eV Total energy + Delta-G solvation = -4239.242333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.112 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.32130 -40.23741 -40.10688 -38.16299 -36.21490 -35.97658 -33.53474 -32.53516 -31.50027 -31.12532 -29.87670 -28.74630 -27.90727 -25.43146 -24.07218 -23.38492 -22.18997 -21.65493 -20.74686 -20.35490 -19.24556 -18.20186 -17.75855 -17.46492 -16.90724 -16.21884 -16.00886 -15.66506 -15.34124 -14.93398 -14.87823 -14.77560 -14.39258 -14.29066 -14.01760 -13.66177 -13.53348 -13.18442 -12.98227 -12.91377 -12.64964 -12.36606 -11.99514 -11.81517 -11.56491 -11.44775 -11.40353 -11.15741 -10.77861 -10.73439 -10.47852 -10.09614 -9.93460 -9.58557 -9.55789 -9.33216 -9.14313 -9.01787 -8.14804 -7.25907 -7.03268 -6.58096 -4.49937 0.35291 0.81338 1.87686 2.32104 2.62399 2.78770 2.81249 2.93664 2.97524 3.02791 3.58878 3.67315 3.77519 4.09420 4.26095 4.42774 4.45914 4.60800 4.69640 4.78558 4.90591 4.99559 5.29205 5.37140 5.49484 5.55032 5.64945 5.76373 5.80529 5.88569 5.90927 6.02164 6.32737 6.36654 6.40205 6.53149 6.74801 6.87733 6.95062 7.00364 7.06942 7.36670 7.37945 7.47030 7.58131 7.84795 7.95478 7.99727 8.25804 8.74893 8.83183 9.16431 10.06688 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.002122 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.779628 B =13194.836634 C =15010.052291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.338 4.338 8 H 0.110 0.890 9 N -0.273 5.273 10 C 0.133 3.867 11 C -0.245 4.245 12 C 0.195 3.805 13 N -0.288 5.288 14 N -0.580 5.580 15 C 0.571 3.429 16 O -0.508 6.508 17 C -0.134 4.134 18 C -0.060 4.060 19 C -0.160 4.160 20 C 0.119 3.881 21 F -0.136 7.136 22 C -0.160 4.160 23 C -0.030 4.030 24 C -0.067 4.067 25 C -0.076 4.076 26 C -0.161 4.161 27 C -0.137 4.137 28 C -0.107 4.107 29 C 0.046 3.954 30 H 0.283 0.717 31 H 0.179 0.821 32 H 0.103 0.897 33 H 0.371 0.629 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.187 -8.118 6.715 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.128 0.872 9 N 0.066 4.934 10 C -0.013 4.013 11 C -0.256 4.256 12 C -0.009 4.009 13 N -0.095 5.095 14 N -0.320 5.320 15 C 0.358 3.642 16 O -0.382 6.382 17 C -0.139 4.139 18 C -0.079 4.079 19 C -0.178 4.178 20 C 0.099 3.901 21 F -0.115 7.115 22 C -0.179 4.179 23 C -0.049 4.049 24 C -0.072 4.072 25 C -0.095 4.095 26 C -0.180 4.180 27 C -0.157 4.157 28 C -0.127 4.127 29 C -0.061 4.061 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.120 0.880 33 H 0.209 0.791 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.427 -9.163 6.067 14.478 hybrid contribution -0.821 1.942 0.554 2.180 sum -10.248 -7.221 6.621 14.177 Atomic orbital electron populations 1.69850 1.06304 1.29349 1.42422 1.25533 0.95795 1.00750 0.94520 0.85670 0.79434 0.79138 0.79145 1.19548 1.19949 1.18703 1.19907 0.94320 0.81898 1.50489 0.87202 1.40062 1.14388 1.03934 1.35005 1.22187 0.88322 0.95610 0.95141 1.17890 0.96873 0.92060 1.18770 1.23580 0.94433 0.90411 0.92503 1.75437 1.01435 1.14705 1.17895 1.46814 1.20195 1.07509 1.57523 1.17693 0.85572 0.80912 0.80025 1.90797 1.46805 1.56987 1.43638 1.20058 0.95950 0.94686 1.03194 1.21224 0.92286 0.99905 0.94444 1.21077 0.99460 0.93687 1.03623 1.17972 0.83578 0.92409 0.96091 1.91523 1.48814 1.88344 1.82784 1.21157 0.94636 1.00729 1.01362 1.21172 0.95482 0.94139 0.94072 1.18795 0.94176 0.92461 1.01809 1.20567 0.96972 0.94115 0.97812 1.20694 0.95700 0.98295 1.03355 1.20509 0.99451 0.92291 1.03408 1.19911 0.96051 0.95332 1.01436 1.18474 0.97659 0.85450 1.04528 0.90620 0.80447 0.87980 0.79062 0.84573 0.83994 0.83878 0.83278 0.85797 0.87523 0.87346 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.81 10.86 55.49 0.60 -19.21 16 2 C 0.04 0.98 5.34 -17.50 -0.09 0.89 16 3 Si 0.94 17.46 29.57 -169.99 -5.03 12.44 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.34 -8.12 9.89 -15.00 -0.15 -8.26 16 8 H 0.11 2.51 7.85 -52.48 -0.41 2.10 16 9 N -0.27 -6.65 2.89 -59.48 -0.17 -6.83 16 10 C 0.13 3.05 9.85 -16.29 -0.16 2.89 16 11 C -0.25 -5.37 6.27 -103.27 -0.65 -6.02 16 12 C 0.20 3.60 10.98 -14.78 -0.16 3.44 16 13 N -0.29 -5.51 9.81 32.08 0.31 -5.19 16 14 N -0.58 -8.81 6.21 30.50 0.19 -8.62 16 15 C 0.57 8.91 7.89 -12.41 -0.10 8.81 16 16 O -0.51 -10.00 16.68 5.25 0.09 -9.91 16 17 C -0.13 -1.53 5.87 -104.97 -0.62 -2.15 16 18 C -0.06 -0.51 9.54 -39.19 -0.37 -0.89 16 19 C -0.16 -1.26 10.01 -39.57 -0.40 -1.65 16 20 C 0.12 1.04 7.31 -39.27 -0.29 0.76 16 21 F -0.14 -1.26 17.26 2.25 0.04 -1.22 16 22 C -0.16 -1.36 10.01 -39.58 -0.40 -1.75 16 23 C -0.03 -0.30 9.59 -39.19 -0.38 -0.68 16 24 C -0.07 -1.56 6.25 -104.90 -0.66 -2.21 16 25 C -0.08 -1.66 9.81 -39.35 -0.39 -2.04 16 26 C -0.16 -3.15 10.03 -39.54 -0.40 -3.55 16 27 C -0.14 -2.61 10.02 -39.53 -0.40 -3.00 16 28 C -0.11 -2.27 9.93 -39.42 -0.39 -2.66 16 29 C 0.05 1.09 6.73 -83.82 -0.56 0.52 16 30 H 0.28 6.10 8.31 -40.82 -0.34 5.76 16 31 H 0.18 3.95 6.35 -52.49 -0.33 3.62 16 32 H 0.10 1.49 8.03 -52.48 -0.42 1.07 16 33 H 0.37 4.12 6.68 -182.59 -1.22 2.90 16 34 H 0.14 0.86 6.40 -52.49 -0.34 0.53 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.15 1.50 7.65 -52.49 -0.40 1.10 16 38 H 0.12 2.76 7.23 -52.49 -0.38 2.38 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.11 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -29.80 368.73 -9.71 -39.51 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.75 Total: 11.04 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -6.55 Total: -17.56 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.93 Total: -39.85 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.80 -9.71 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033714569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.666 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds