Wall clock time and date at job start Tue Mar 31 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 120.00264 * 2 1 4 4 H 1.48507 * 109.46670 * 269.99788 * 3 2 1 5 5 H 1.48495 * 109.47062 * 29.99648 * 3 2 1 6 6 H 1.48496 * 109.47482 * 150.00220 * 3 2 1 7 7 C 1.38657 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00182 * 0.02562 * 7 2 1 9 9 O 1.34828 * 119.99933 * 179.97438 * 7 2 1 10 10 C 1.35767 * 116.99988 * 174.92564 * 9 7 2 11 11 C 1.39091 * 119.97243 * 5.54579 * 10 9 7 12 12 C 1.38289 * 120.32744 * 179.97438 * 11 10 9 13 13 C 1.37904 * 120.27307 * 359.97438 * 12 11 10 14 14 C 1.40114 * 119.93603 * 0.02562 * 13 12 11 15 15 C 1.46704 * 120.15866 * 180.02562 * 14 13 12 16 16 C 1.37637 * 120.00080 * 144.46147 * 15 14 13 17 17 C 1.47720 * 127.48557 * 171.96025 * 16 15 14 18 18 O 1.21628 * 126.58239 * 359.94574 * 17 16 15 19 19 N 1.34646 * 106.83526 * 179.97438 * 17 16 15 20 20 N 1.39457 * 110.64223 * 0.02562 * 19 17 16 21 21 C 1.39841 * 124.67797 * 180.02562 * 20 19 17 22 22 C 1.38892 * 120.07246 * 179.70232 * 21 20 19 23 23 C 1.38109 * 119.92464 * 179.72097 * 22 21 20 24 24 C 1.38275 * 120.07336 * 0.55245 * 23 22 21 25 25 C 1.38284 * 120.14903 * 359.72259 * 24 23 22 26 26 C 1.38107 * 120.06811 * 359.97438 * 25 24 23 27 27 C 1.34651 * 110.64208 * 359.74556 * 20 19 17 28 28 O 1.21649 * 126.56978 * 180.26591 * 27 20 19 29 29 C 1.38463 * 119.97563 * 185.80232 * 10 9 7 30 30 H 0.96997 * 119.99767 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.83657 * 359.97438 * 11 10 9 32 32 H 1.08001 * 119.86738 * 179.97438 * 12 11 10 33 33 H 1.07992 * 120.03392 * 180.02562 * 13 12 11 34 34 H 1.08001 * 120.00268 * 324.46620 * 15 14 13 35 35 H 0.97003 * 124.68104 * 179.97438 * 19 17 16 36 36 H 1.07999 * 120.03935 * 359.97438 * 22 21 20 37 37 H 1.08005 * 119.95738 * 180.25393 * 23 22 21 38 38 H 1.08002 * 119.92848 * 179.74725 * 24 23 22 39 39 H 1.07998 * 119.97073 * 179.97438 * 25 24 23 40 40 H 1.08004 * 120.03804 * 179.97438 * 26 25 24 41 41 H 1.08007 * 120.13530 * 0.04672 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9735 -2.4057 0.1076 11 6 3.2204 -3.5750 0.0956 12 6 3.8407 -4.8062 0.2041 13 6 5.2122 -4.8855 0.3248 14 6 5.9817 -3.7147 0.3381 15 6 7.4411 -3.7933 0.4656 16 6 8.2398 -2.8933 -0.2025 17 6 9.7000 -2.7146 -0.0681 18 8 10.4425 -3.3405 0.6643 19 7 10.0510 -1.7254 -0.9114 20 7 8.9343 -1.2387 -1.5903 21 6 8.9646 -0.2097 -2.5367 22 6 7.7923 0.1965 -3.1610 23 6 7.8248 1.2169 -4.0911 24 6 9.0245 1.8264 -4.4094 25 6 10.1944 1.4206 -3.7939 26 6 10.1679 0.4050 -2.8584 27 6 7.8239 -1.9003 -1.2132 28 8 6.6944 -1.7143 -1.6248 29 6 5.3508 -2.4693 0.2345 30 1 -0.4850 0.8400 -0.0004 31 1 2.1459 -3.5212 0.0010 32 1 3.2487 -5.7095 0.1944 33 1 5.6926 -5.8490 0.4089 34 1 7.8888 -4.5575 1.0838 35 1 10.9558 -1.3961 -1.0298 36 1 6.8556 -0.2824 -2.9165 37 1 6.9128 1.5359 -4.5739 38 1 9.0478 2.6214 -5.1400 39 1 11.1299 1.8983 -4.0450 40 1 11.0820 0.0882 -2.3783 41 1 5.9365 -1.5619 0.2489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033758516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:43 Heat of formation + Delta-G solvation = 54.206164 kcal Electronic energy + Delta-G solvation = -29686.711295 eV Core-core repulsion = 25500.827661 eV Total energy + Delta-G solvation = -4185.883634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.110 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.02247 -39.38961 -39.25769 -38.37365 -37.10733 -36.61118 -33.74809 -32.48401 -32.34074 -31.20701 -30.05024 -29.48876 -28.80226 -25.92409 -25.14911 -23.17511 -22.96328 -22.02146 -21.31701 -20.79856 -19.93347 -18.85945 -17.73771 -17.49468 -16.70302 -16.64561 -16.52713 -15.97240 -15.48039 -15.38256 -14.82598 -14.65501 -14.57980 -14.36706 -14.17206 -13.87160 -13.85356 -13.74666 -13.50542 -13.23257 -12.70709 -12.36491 -12.30642 -12.07271 -11.88869 -11.72393 -11.43506 -11.12689 -10.98725 -10.85328 -10.69223 -10.23952 -9.98018 -9.77847 -9.73139 -9.43424 -9.19549 -8.92377 -8.10478 -8.00375 -7.47986 -6.46363 -4.12027 0.13597 1.02582 1.16576 1.31442 2.03636 2.16116 2.45460 3.10460 3.21024 3.23946 3.25386 3.39241 3.63218 3.89343 4.21048 4.35560 4.50546 4.57906 4.63947 4.72279 4.98677 5.01573 5.06450 5.10151 5.17646 5.39415 5.41409 5.47872 5.65998 5.69367 5.72814 5.87291 5.96493 6.06876 6.09266 6.19652 6.34134 6.37710 6.45598 6.60081 6.79432 6.83723 6.98009 7.04935 7.15159 7.41991 7.64005 7.70967 7.86164 7.96305 8.88750 9.50865 10.60899 Molecular weight = 350.11amu Principal moments of inertia in cm(-1) A = 0.008395 B = 0.004204 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.543548 B = 6658.888410 C = 9345.381945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.107 0.893 9 O -0.212 6.212 10 C 0.146 3.854 11 C -0.191 4.191 12 C -0.090 4.090 13 C -0.159 4.159 14 C -0.096 4.096 15 C 0.146 3.854 16 C -0.312 4.312 17 C 0.578 3.422 18 O -0.506 6.506 19 N -0.520 5.520 20 N -0.362 5.362 21 C 0.168 3.832 22 C -0.146 4.146 23 C -0.083 4.083 24 C -0.144 4.144 25 C -0.090 4.090 26 C -0.163 4.163 27 C 0.561 3.439 28 O -0.452 6.452 29 C -0.097 4.097 30 H 0.280 0.720 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.154 0.846 35 H 0.434 0.566 36 H 0.162 0.838 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.365 -1.702 -5.046 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.117 6.117 10 C 0.094 3.906 11 C -0.211 4.211 12 C -0.108 4.108 13 C -0.178 4.178 14 C -0.097 4.097 15 C 0.125 3.875 16 C -0.319 4.319 17 C 0.368 3.632 18 O -0.380 6.380 19 N -0.274 5.274 20 N -0.178 5.178 21 C 0.075 3.925 22 C -0.167 4.167 23 C -0.102 4.102 24 C -0.163 4.163 25 C -0.109 4.109 26 C -0.184 4.184 27 C 0.352 3.648 28 O -0.322 6.322 29 C -0.116 4.116 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.280 0.720 36 H 0.179 0.821 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.900 -1.626 -4.850 19.580 hybrid contribution 0.771 0.955 -0.207 1.245 sum 19.671 -0.671 -5.057 20.321 Atomic orbital electron populations 1.69641 1.05563 1.28592 1.47613 1.24446 0.94996 0.98829 0.95553 0.86204 0.80344 0.81432 0.79140 1.19716 1.20784 1.18330 1.20775 0.76871 0.96639 1.52079 0.87575 1.83607 1.22538 1.25323 1.80217 1.18869 0.91356 0.85787 0.94563 1.21555 1.01492 0.91854 1.06165 1.20696 0.93990 0.96957 0.99186 1.20790 0.93797 0.96073 1.07152 1.18406 0.90441 0.93883 1.06954 1.22995 0.92095 0.88534 0.83840 1.22069 0.94725 1.06999 1.08074 1.17985 0.88295 0.78362 0.78600 1.90906 1.59413 1.48651 1.39048 1.45152 1.03565 1.37711 1.40977 1.44747 1.01221 1.33969 1.37863 1.17829 0.95691 0.88638 0.90352 1.21645 0.98334 0.99107 0.97592 1.21139 0.98437 0.94499 0.96075 1.21182 0.92638 1.01195 1.01324 1.20887 0.98582 0.95924 0.95484 1.20595 0.95638 0.99973 1.02200 1.18243 0.82742 0.81128 0.82723 1.90963 1.17526 1.65527 1.58233 1.20515 0.92171 0.96714 1.02250 0.90971 0.84571 0.86522 0.86586 0.82878 0.71982 0.82103 0.84928 0.85714 0.85483 0.86178 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 13.96 55.48 0.77 -24.17 16 2 C 0.07 1.81 5.49 -17.52 -0.10 1.72 16 3 Si 0.90 21.67 28.62 -169.99 -4.86 16.81 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.39 -10.75 9.94 30.89 0.31 -10.44 16 8 H 0.11 2.97 5.42 -52.49 -0.28 2.68 16 9 O -0.21 -5.54 8.58 0.00 0.00 -5.54 16 10 C 0.15 3.31 6.64 -39.18 -0.26 3.05 16 11 C -0.19 -3.92 9.17 -39.25 -0.36 -4.28 16 12 C -0.09 -1.50 10.02 -39.69 -0.40 -1.90 16 13 C -0.16 -2.40 9.80 -39.00 -0.38 -2.78 16 14 C -0.10 -1.56 5.50 -105.12 -0.58 -2.14 16 15 C 0.15 1.91 9.91 -36.38 -0.36 1.55 16 16 C -0.31 -4.39 6.06 -102.39 -0.62 -5.01 16 17 C 0.58 7.60 8.60 -12.44 -0.11 7.49 16 18 O -0.51 -7.53 18.05 5.25 0.09 -7.43 16 19 N -0.52 -5.77 6.67 30.48 0.20 -5.57 16 20 N -0.36 -4.81 3.72 -10.78 -0.04 -4.85 16 21 C 0.17 2.14 6.66 -83.72 -0.56 1.58 16 22 C -0.15 -2.01 9.34 -39.39 -0.37 -2.37 16 23 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 24 C -0.14 -1.35 10.04 -39.55 -0.40 -1.75 16 25 C -0.09 -0.79 10.04 -39.61 -0.40 -1.19 16 26 C -0.16 -1.60 9.62 -39.39 -0.38 -1.98 16 27 C 0.56 8.80 7.15 -12.47 -0.09 8.71 16 28 O -0.45 -8.40 10.93 5.23 0.06 -8.35 16 29 C -0.10 -1.93 6.99 -38.84 -0.27 -2.20 16 30 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.14 2.92 5.62 -52.49 -0.29 2.63 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.43 3.40 7.65 -183.08 -1.40 2.00 16 36 H 0.16 2.60 5.32 -52.49 -0.28 2.32 16 37 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.87 6.78 -52.48 -0.36 0.51 16 41 H 0.12 2.49 5.96 -52.48 -0.31 2.18 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -32.08 356.28 -8.72 -40.80 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.60 Total: 6.22 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -5.71 Total: -13.28 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.94 Total: -34.59 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.15 Total: -21.32 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.08 -8.72 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033758516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.007 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds