Wall clock time and date at job start Tue Mar 31 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31456 * 1 3 3 Si 1.86799 * 120.00248 * 2 1 4 4 H 1.48496 * 109.47023 * 270.00168 * 3 2 1 5 5 H 1.48499 * 109.46816 * 30.00259 * 3 2 1 6 6 H 1.48498 * 109.46864 * 150.00174 * 3 2 1 7 7 C 1.38814 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99833 * 168.88509 * 7 2 1 9 9 N 1.37066 * 119.99906 * 348.88979 * 7 2 1 10 10 C 1.36259 * 124.87705 * 338.50594 * 9 7 2 11 11 C 1.36279 * 109.70170 * 179.97438 * 10 9 7 12 12 C 1.46929 * 126.70052 * 179.97438 * 11 10 9 13 13 N 1.30082 * 120.00238 * 180.02562 * 12 11 10 14 14 N 1.40092 * 120.00027 * 179.97438 * 13 12 11 15 15 C 1.34787 * 119.99707 * 179.97438 * 14 13 12 16 16 O 1.21612 * 119.99859 * 0.02562 * 15 14 13 17 17 C 1.47782 * 119.99659 * 180.02562 * 15 14 13 18 18 C 1.39630 * 120.13956 * 359.97438 * 17 15 14 19 19 C 1.37940 * 119.90241 * 179.97438 * 18 17 15 20 20 C 1.38348 * 120.17548 * 0.02562 * 19 18 17 21 21 C 1.38554 * 120.27722 * 0.02562 * 20 19 18 22 22 F 1.35099 * 119.95805 * 180.02562 * 21 20 19 23 23 C 1.38210 * 120.09415 * 359.97438 * 21 20 19 24 24 C 1.47575 * 106.59683 * 0.22583 * 11 10 9 25 25 C 1.39193 * 133.91018 * 179.75171 * 24 11 10 26 26 C 1.37900 * 119.68322 * 180.02562 * 25 24 11 27 27 C 1.38674 * 120.29204 * 359.97438 * 26 25 24 28 28 C 1.37930 * 120.60419 * 359.62372 * 27 26 25 29 29 C 1.38329 * 124.87760 * 158.47038 * 9 7 2 30 30 H 0.97004 * 119.99973 * 0.02562 * 1 2 3 31 31 H 1.07998 * 125.14686 * 0.02562 * 10 9 7 32 32 H 1.08003 * 120.00065 * 0.02562 * 12 11 10 33 33 H 0.96994 * 120.00420 * 359.97438 * 14 13 12 34 34 H 1.07998 * 120.04439 * 0.02562 * 18 17 15 35 35 H 1.07997 * 119.91061 * 179.97438 * 19 18 17 36 36 H 1.07995 * 119.86342 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.08712 * 179.72535 * 23 21 20 38 38 H 1.07999 * 120.15502 * 0.05031 * 25 24 11 39 39 H 1.08001 * 119.85510 * 180.02562 * 26 25 24 40 40 H 1.08002 * 119.69747 * 180.02562 * 27 26 25 41 41 H 1.08004 * 120.02949 * 179.91282 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4961 2.0463 -1.4000 5 1 1.4461 2.6526 0.7001 6 1 3.5462 1.4400 0.7000 7 6 2.0086 -1.2022 -0.0005 8 1 3.0733 -1.2109 -0.1808 9 7 1.3424 -2.3782 0.2277 10 6 0.1398 -2.4824 0.8598 11 6 -0.2367 -3.7908 0.9179 12 6 -1.4669 -4.3247 1.5183 13 7 -1.6965 -5.6050 1.5014 14 7 -2.8692 -6.1140 2.0744 15 6 -3.1072 -7.4406 2.0563 16 8 -2.3038 -8.1955 1.5431 17 6 -4.3446 -7.9774 2.6602 18 6 -5.2687 -7.1132 3.2507 19 6 -6.4223 -7.6195 3.8125 20 6 -6.6657 -8.9813 3.7928 21 6 -5.7532 -9.8457 3.2098 22 9 -5.9976 -11.1743 3.1938 23 6 -4.5937 -9.3506 2.6436 24 6 0.8353 -4.5674 0.2656 25 6 1.0323 -5.9232 0.0194 26 6 2.1740 -6.3401 -0.6320 27 6 3.1228 -5.4154 -1.0417 28 6 2.9358 -4.0684 -0.8113 29 6 1.7941 -3.6295 -0.1512 30 1 -0.4850 0.8401 -0.0004 31 1 -0.4292 -1.6535 1.2541 32 1 -2.1807 -3.6541 1.9737 33 1 -3.5098 -5.5119 2.4840 34 1 -5.0810 -6.0498 3.2668 35 1 -7.1370 -6.9513 4.2696 36 1 -7.5707 -9.3723 4.2338 37 1 -3.8803 -10.0248 2.1931 38 1 0.2944 -6.6450 0.3368 39 1 2.3295 -7.3913 -0.8248 40 1 4.0132 -5.7525 -1.5515 41 1 3.6815 -3.3564 -1.1330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033770745.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:46 Heat of formation + Delta-G solvation = 47.948906 kcal Electronic energy + Delta-G solvation = -28134.365048 eV Core-core repulsion = 23895.156957 eV Total energy + Delta-G solvation = -4239.208091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.112 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.21131 -40.23986 -40.11006 -38.20117 -36.21569 -35.99677 -33.53339 -32.52198 -31.54856 -30.98619 -29.91073 -28.75189 -27.91717 -25.51088 -24.35441 -23.02488 -22.25233 -21.65584 -20.77239 -20.37088 -19.31014 -18.16955 -17.76512 -16.91846 -16.57029 -16.43760 -16.07279 -15.94181 -15.60430 -14.97124 -14.86972 -14.77332 -14.43450 -14.31982 -14.10039 -13.66293 -13.48713 -13.17203 -12.94802 -12.66136 -12.41944 -12.32859 -12.00035 -11.83886 -11.68879 -11.56514 -11.40430 -11.16115 -10.78012 -10.73400 -10.48191 -10.09898 -9.95349 -9.56518 -9.49673 -9.33863 -9.17044 -9.03234 -8.15469 -7.25972 -7.03547 -6.58413 -4.50225 0.37457 0.77795 1.87468 2.32126 2.62832 2.73169 2.81376 2.93466 2.97378 3.02753 3.56584 3.66987 3.86797 4.08998 4.30041 4.35388 4.58729 4.61297 4.68543 4.69811 4.90573 4.99476 5.26225 5.32649 5.51411 5.57519 5.66089 5.79639 5.80528 5.84408 5.90982 6.01857 6.32543 6.37698 6.41151 6.53013 6.74518 6.87440 6.94840 7.00098 7.06878 7.35566 7.36624 7.46829 7.58062 7.84243 7.93776 7.99549 8.25547 8.74602 8.81784 9.16178 10.06408 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002149 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.240569 B =13026.942436 C =14772.305501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.338 4.338 8 H 0.110 0.890 9 N -0.273 5.273 10 C 0.133 3.867 11 C -0.245 4.245 12 C 0.196 3.804 13 N -0.288 5.288 14 N -0.579 5.579 15 C 0.570 3.430 16 O -0.505 6.505 17 C -0.093 4.093 18 C -0.100 4.100 19 C -0.096 4.096 20 C -0.133 4.133 21 C 0.093 3.907 22 F -0.136 7.136 23 C -0.095 4.095 24 C -0.067 4.067 25 C -0.076 4.076 26 C -0.161 4.161 27 C -0.137 4.137 28 C -0.107 4.107 29 C 0.046 3.954 30 H 0.283 0.717 31 H 0.179 0.821 32 H 0.103 0.897 33 H 0.372 0.628 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 -7.023 7.318 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.128 0.872 9 N 0.066 4.934 10 C -0.013 4.013 11 C -0.256 4.256 12 C -0.008 4.008 13 N -0.095 5.095 14 N -0.319 5.319 15 C 0.356 3.644 16 O -0.379 6.379 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.152 4.152 21 C 0.074 3.926 22 F -0.114 7.114 23 C -0.115 4.115 24 C -0.072 4.072 25 C -0.095 4.095 26 C -0.180 4.180 27 C -0.157 4.157 28 C -0.127 4.127 29 C -0.061 4.061 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.121 0.879 33 H 0.210 0.790 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.367 -8.104 6.648 14.742 hybrid contribution -0.631 1.746 0.422 1.904 sum -10.998 -6.358 7.071 14.539 Atomic orbital electron populations 1.69849 1.06306 1.29353 1.42416 1.25535 0.95795 1.00754 0.94512 0.85667 0.79435 0.79128 0.79148 1.19547 1.19947 1.18700 1.19910 0.94322 0.81891 1.50484 0.87199 1.40065 1.14417 1.03943 1.34955 1.22191 0.88299 0.95607 0.95155 1.17887 0.96739 0.92058 1.18930 1.23590 0.94443 0.90396 0.92407 1.75456 1.01321 1.14735 1.18010 1.46781 1.20063 1.07405 1.57618 1.17681 0.85578 0.81007 0.80133 1.90802 1.46677 1.56969 1.43423 1.19782 0.95408 0.93531 1.01057 1.21445 0.93699 0.99910 0.96848 1.20969 0.97182 0.94456 0.98780 1.21361 0.99704 0.93750 1.00403 1.17538 0.95701 0.77893 1.01470 1.91530 1.94299 1.30872 1.94715 1.21254 0.96381 0.95404 0.98463 1.18795 0.94178 0.92441 1.01811 1.20566 0.96964 0.94113 0.97833 1.20696 0.95668 0.98304 1.03353 1.20512 0.99436 0.92259 1.03445 1.19913 0.96031 0.95310 1.01469 1.18476 0.97748 0.85435 1.04458 0.90616 0.80432 0.87941 0.78966 0.84859 0.84185 0.84239 0.83097 0.85807 0.87517 0.87339 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.78 10.86 55.49 0.60 -19.18 16 2 C 0.04 0.98 5.34 -17.50 -0.09 0.89 16 3 Si 0.94 17.44 29.57 -169.99 -5.03 12.41 16 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 7 C -0.34 -8.11 9.89 -15.00 -0.15 -8.26 16 8 H 0.11 2.51 7.85 -52.49 -0.41 2.10 16 9 N -0.27 -6.65 2.90 -59.47 -0.17 -6.82 16 10 C 0.13 3.05 9.85 -16.29 -0.16 2.89 16 11 C -0.25 -5.38 6.27 -103.28 -0.65 -6.02 16 12 C 0.20 3.61 10.98 -14.78 -0.16 3.45 16 13 N -0.29 -5.53 9.81 32.08 0.31 -5.22 16 14 N -0.58 -8.82 6.22 30.52 0.19 -8.63 16 15 C 0.57 9.05 7.89 -12.35 -0.10 8.96 16 16 O -0.50 -10.16 16.69 5.27 0.09 -10.08 16 17 C -0.09 -1.10 5.87 -104.98 -0.62 -1.71 16 18 C -0.10 -0.84 9.54 -39.17 -0.37 -1.21 16 19 C -0.10 -0.64 10.03 -39.65 -0.40 -1.04 16 20 C -0.13 -1.00 10.02 -39.42 -0.39 -1.39 16 21 C 0.09 0.92 7.29 -39.47 -0.29 0.64 16 22 F -0.14 -1.43 17.26 2.25 0.04 -1.40 16 23 C -0.10 -1.10 9.57 -39.10 -0.37 -1.47 16 24 C -0.07 -1.56 6.25 -104.90 -0.66 -2.21 16 25 C -0.08 -1.67 9.81 -39.35 -0.39 -2.05 16 26 C -0.16 -3.17 10.03 -39.54 -0.40 -3.56 16 27 C -0.14 -2.61 10.02 -39.53 -0.40 -3.01 16 28 C -0.11 -2.27 9.93 -39.41 -0.39 -2.66 16 29 C 0.05 1.09 6.73 -83.82 -0.56 0.52 16 30 H 0.28 6.09 8.31 -40.82 -0.34 5.75 16 31 H 0.18 3.95 6.35 -52.49 -0.33 3.61 16 32 H 0.10 1.49 8.03 -52.48 -0.42 1.07 16 33 H 0.37 4.12 6.69 -182.61 -1.22 2.90 16 34 H 0.13 0.82 6.40 -52.49 -0.34 0.48 16 35 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.15 1.82 7.65 -52.49 -0.40 1.42 16 38 H 0.12 2.78 7.23 -52.49 -0.38 2.40 16 39 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -30.01 368.74 -9.71 -39.72 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.75 Total: 10.90 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -6.55 Total: -17.26 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.93 Total: -39.85 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.01 -9.71 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033770745.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.666 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds