Wall clock time and date at job start Tue Mar 31 2020 05:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31454 * 1 3 3 Si 1.86803 * 120.00236 * 2 1 4 4 H 1.48501 * 109.47221 * 89.99935 * 3 2 1 5 5 H 1.48506 * 109.47159 * 209.99908 * 3 2 1 6 6 H 1.48495 * 109.46787 * 329.99739 * 3 2 1 7 7 C 1.38792 * 120.00052 * 180.27410 * 2 1 3 8 8 H 1.08006 * 119.99700 * 359.72328 * 7 2 1 9 9 O 1.34738 * 119.99963 * 179.72699 * 7 2 1 10 10 C 1.35424 * 116.99555 * 174.91952 * 9 7 2 11 11 C 1.38796 * 120.20100 * 5.59983 * 10 9 7 12 12 C 1.38026 * 120.11798 * 179.97438 * 11 10 9 13 13 C 1.38738 * 120.52449 * 0.02562 * 12 11 10 14 14 C 1.37603 * 120.39469 * 359.97112 * 13 12 11 15 15 C 1.40253 * 119.87065 * 359.73190 * 14 13 12 16 16 C 1.46232 * 120.25932 * 180.29609 * 15 14 13 17 17 C 1.38016 * 119.99637 * 322.59235 * 16 15 14 18 18 C 1.47567 * 127.45998 * 172.40341 * 17 16 15 19 19 O 1.21655 * 126.57406 * 0.02562 * 18 17 16 20 20 N 1.34651 * 106.85707 * 179.89022 * 18 17 16 21 21 N 1.39469 * 110.59323 * 0.38866 * 20 18 17 22 22 C 1.39844 * 124.69378 * 179.76489 * 21 20 18 23 23 C 1.38896 * 120.06997 * 179.70335 * 22 21 20 24 24 C 1.38107 * 119.92120 * 179.72491 * 23 22 21 25 25 C 1.38287 * 120.07863 * 0.55017 * 24 23 22 26 26 C 1.38285 * 120.13857 * 359.72613 * 25 24 23 27 27 C 1.38105 * 120.07988 * 359.97438 * 26 25 24 28 28 C 1.34638 * 110.60704 * 359.74853 * 21 20 18 29 29 O 1.21670 * 126.56894 * 179.97438 * 28 21 20 30 30 H 0.97001 * 119.99649 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.93698 * 0.02562 * 11 10 9 32 32 H 1.08005 * 119.73235 * 179.97438 * 12 11 10 33 33 H 1.07994 * 119.79788 * 179.97438 * 13 12 11 34 34 H 1.08001 * 120.06624 * 179.97438 * 14 13 12 35 35 H 1.07995 * 120.00347 * 142.59343 * 16 15 14 36 36 H 0.96997 * 124.70408 * 180.13423 * 20 18 17 37 37 H 1.07995 * 120.03789 * 359.97438 * 23 22 21 38 38 H 1.08007 * 119.96266 * 180.27834 * 24 23 22 39 39 H 1.07992 * 119.92734 * 179.74956 * 25 24 23 40 40 H 1.08005 * 119.96091 * 180.02562 * 26 25 24 41 41 H 1.08000 * 120.03896 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4961 2.0464 1.4001 5 1 3.5462 1.4401 -0.7000 6 1 1.4461 2.6526 -0.7001 7 6 2.0085 -1.2020 -0.0058 8 1 1.4684 -2.1373 -0.0057 9 8 3.3559 -1.2019 -0.0113 10 6 3.9711 -2.4041 0.0901 11 6 3.2242 -3.5739 0.0769 12 6 3.8530 -4.7983 0.1798 13 6 5.2333 -4.8738 0.2978 14 6 5.9945 -3.7276 0.3132 15 6 5.3733 -2.4750 0.2034 16 6 6.1746 -1.2518 0.2122 17 6 7.2834 -1.1592 1.0287 18 6 8.2890 -0.0796 1.0577 19 8 8.3040 0.9160 0.3588 20 7 9.1853 -0.4062 2.0081 21 7 8.8503 -1.6234 2.6007 22 6 9.5830 -2.2413 3.6190 23 6 9.1571 -3.4541 4.1453 24 6 9.8862 -4.0643 5.1470 25 6 11.0327 -3.4638 5.6340 26 6 11.4562 -2.2536 5.1161 27 6 10.7352 -1.6409 4.1100 28 6 7.7236 -2.1211 2.0568 29 8 7.1740 -3.1646 2.3557 30 1 -0.4850 0.8401 -0.0004 31 1 2.1492 -3.5260 -0.0150 32 1 3.2657 -5.7046 0.1693 33 1 5.7131 -5.8380 0.3781 34 1 7.0686 -3.7926 0.4057 35 1 5.8987 -0.4209 -0.4201 36 1 9.9588 0.1290 2.2449 37 1 8.2591 -3.9212 3.7689 38 1 9.5581 -5.0096 5.5537 39 1 11.5987 -3.9412 6.4201 40 1 12.3523 -1.7873 5.4983 41 1 11.0668 -0.6959 3.7057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033806875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:47 Heat of formation + Delta-G solvation = 49.911660 kcal Electronic energy + Delta-G solvation = -29650.098071 eV Core-core repulsion = 25464.028213 eV Total energy + Delta-G solvation = -4186.069858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.110 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.83969 -39.54878 -39.20676 -38.25516 -36.98982 -36.47710 -33.74602 -32.71836 -32.30673 -31.22872 -29.91108 -29.39765 -28.75295 -25.83934 -25.35304 -23.14763 -22.90648 -21.84126 -21.32740 -20.73033 -19.80176 -18.70404 -18.14712 -17.52860 -16.64438 -16.58990 -16.37231 -15.93977 -15.36241 -15.11177 -14.87233 -14.66823 -14.38239 -14.33660 -14.20907 -14.06336 -13.85584 -13.74948 -13.44566 -13.18395 -12.69947 -12.59612 -12.38066 -12.07252 -11.77856 -11.72223 -11.45147 -11.09310 -10.98114 -10.88876 -10.50742 -10.37674 -9.84541 -9.74468 -9.65456 -9.47726 -9.22941 -9.10818 -8.07522 -7.94132 -7.52391 -6.69962 -4.32836 0.41295 1.03492 1.13616 1.46315 2.10099 2.19108 2.61790 3.09811 3.15222 3.27027 3.32319 3.47424 3.63025 4.03071 4.20680 4.31918 4.47683 4.58872 4.69540 4.80190 4.86195 4.96963 5.11445 5.16345 5.20249 5.44337 5.46434 5.55943 5.66988 5.82408 5.87624 5.90029 6.01600 6.13661 6.17878 6.25304 6.32540 6.34015 6.52851 6.55649 6.83484 6.91826 6.97799 7.11012 7.21604 7.36707 7.53211 7.74556 7.85062 8.05984 8.62020 9.19605 10.35323 Molecular weight = 350.11amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.003267 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.898337 B = 8569.214384 C = 9828.277913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.254 1.254 6 H -0.277 1.277 7 C -0.390 4.390 8 H 0.114 0.886 9 O -0.193 6.193 10 C 0.195 3.805 11 C -0.231 4.231 12 C -0.039 4.039 13 C -0.217 4.217 14 C 0.014 3.986 15 C -0.211 4.211 16 C 0.174 3.826 17 C -0.353 4.353 18 C 0.578 3.422 19 O -0.510 6.510 20 N -0.525 5.525 21 N -0.361 5.361 22 C 0.173 3.827 23 C -0.150 4.150 24 C -0.085 4.085 25 C -0.149 4.149 26 C -0.089 4.089 27 C -0.164 4.164 28 C 0.570 3.430 29 O -0.477 6.477 30 H 0.286 0.714 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.431 0.569 37 H 0.161 0.839 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.975 -6.082 6.992 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.194 1.194 5 H -0.178 1.178 6 H -0.202 1.202 7 C -0.464 4.464 8 H 0.131 0.869 9 O -0.094 6.094 10 C 0.139 3.861 11 C -0.250 4.250 12 C -0.058 4.058 13 C -0.236 4.236 14 C -0.004 4.004 15 C -0.212 4.212 16 C 0.154 3.846 17 C -0.360 4.360 18 C 0.369 3.631 19 O -0.384 6.384 20 N -0.280 5.280 21 N -0.177 5.177 22 C 0.079 3.921 23 C -0.171 4.171 24 C -0.103 4.103 25 C -0.168 4.168 26 C -0.107 4.107 27 C -0.186 4.186 28 C 0.364 3.636 29 O -0.350 6.350 30 H 0.096 0.904 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.165 0.835 36 H 0.277 0.723 37 H 0.178 0.822 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.375 -5.733 6.672 20.372 hybrid contribution 0.635 1.082 0.347 1.302 sum 19.010 -4.651 7.020 20.791 Atomic orbital electron populations 1.69580 1.05780 1.29296 1.44656 1.24548 0.95075 0.99158 0.94865 0.86245 0.80638 0.81046 0.79586 1.19400 1.17771 1.20228 1.20917 0.76277 0.97080 1.52166 0.86903 1.83414 1.23321 1.26250 1.76461 1.19214 0.90243 0.85542 0.91085 1.21199 1.01260 0.91584 1.10909 1.21078 0.94408 0.96803 0.93505 1.20579 0.93772 0.97710 1.11554 1.20980 0.99073 0.90406 0.89964 1.17926 0.90208 0.92859 1.20226 1.22738 0.84053 0.94030 0.83801 1.21714 1.04796 1.01120 1.08366 1.18018 0.81286 0.85524 0.78276 1.90906 1.75351 1.28728 1.43438 1.45214 1.30545 1.14178 1.38035 1.44718 1.25352 1.13045 1.34546 1.17873 0.92234 0.93243 0.88738 1.21588 1.02982 0.94080 0.98439 1.21081 0.94328 0.99568 0.95363 1.21151 0.97813 0.96360 1.01445 1.20891 0.99104 0.95271 0.95453 1.20634 0.95793 1.01361 1.00769 1.18164 0.78009 0.85439 0.81990 1.90816 1.56327 1.22752 1.65138 0.90395 0.84360 0.86708 0.86875 0.86150 0.83537 0.72322 0.82223 0.85186 0.85842 0.85544 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.17 13.96 55.49 0.77 -22.40 16 2 C 0.07 1.84 5.50 -17.51 -0.10 1.74 16 3 Si 0.90 20.46 28.62 -169.99 -4.86 15.59 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.25 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.39 -10.12 9.95 30.94 0.31 -9.81 16 8 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16 9 O -0.19 -4.65 8.05 1.31 0.01 -4.64 16 10 C 0.20 4.18 6.67 -38.38 -0.26 3.92 16 11 C -0.23 -4.57 9.16 -39.45 -0.36 -4.94 16 12 C -0.04 -0.66 10.03 -39.47 -0.40 -1.06 16 13 C -0.22 -3.52 10.02 -39.63 -0.40 -3.92 16 14 C 0.01 0.24 7.04 -39.06 -0.27 -0.04 16 15 C -0.21 -4.02 5.50 -104.94 -0.58 -4.59 16 16 C 0.17 3.14 9.47 -36.45 -0.35 2.79 16 17 C -0.35 -5.98 6.07 -102.39 -0.62 -6.60 16 18 C 0.58 9.28 8.59 -12.51 -0.11 9.17 16 19 O -0.51 -9.40 18.05 5.23 0.09 -9.30 16 20 N -0.53 -6.71 6.68 30.45 0.20 -6.51 16 21 N -0.36 -5.02 3.73 -10.83 -0.04 -5.06 16 22 C 0.17 2.14 6.66 -83.71 -0.56 1.58 16 23 C -0.15 -1.83 9.34 -39.39 -0.37 -2.20 16 24 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 25 C -0.15 -1.23 10.04 -39.55 -0.40 -1.63 16 26 C -0.09 -0.73 10.04 -39.61 -0.40 -1.13 16 27 C -0.16 -1.60 9.62 -39.39 -0.38 -1.98 16 28 C 0.57 9.31 7.18 -12.54 -0.09 9.22 16 29 O -0.48 -8.31 10.96 5.22 0.06 -8.26 16 30 H 0.29 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.14 2.82 5.64 -52.49 -0.30 2.53 16 32 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.12 1.95 6.08 -52.49 -0.32 1.63 16 35 H 0.15 2.58 8.06 -52.49 -0.42 2.16 16 36 H 0.43 4.05 7.65 -183.08 -1.40 2.65 16 37 H 0.16 2.20 5.32 -52.49 -0.28 1.92 16 38 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.12 0.92 6.78 -52.49 -0.36 0.56 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -29.53 355.83 -8.72 -38.26 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.61 Total: 7.63 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -5.71 Total: -10.68 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.94 Total: -33.97 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.16 Total: -22.20 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.86 Total: 15.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.53 -8.72 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033806875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.168 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds