Wall clock time and date at job start Tue Mar 31 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 C 1.53000 * 109.47430 * 120.00387 * 2 1 3 5 5 H 1.08998 * 109.46925 * 300.00389 * 4 2 1 6 6 N 1.46499 * 109.47070 * 180.02562 * 4 2 1 7 7 C 1.34777 * 120.00199 * 85.00207 * 6 4 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 4 10 10 S 1.80999 * 109.46903 * 179.72354 * 9 7 6 11 11 C 1.76200 * 99.99730 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00351 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00095 * 179.97438 * 11 10 9 14 14 N 1.31630 * 120.00506 * 180.02562 * 13 11 10 15 15 Si 1.86809 * 119.99909 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47104 * 90.00095 * 15 13 11 17 17 H 1.48502 * 109.46943 * 210.00235 * 15 13 11 18 18 H 1.48497 * 109.46910 * 330.00035 * 15 13 11 19 19 C 1.50697 * 109.46811 * 59.99704 * 4 2 1 20 20 C 1.38259 * 119.94344 * 79.73459 * 19 4 2 21 21 C 1.38192 * 120.11493 * 179.77405 * 20 19 4 22 22 C 1.38701 * 120.06524 * 0.55808 * 21 20 19 23 23 C 1.38976 * 119.82199 * 359.62783 * 22 21 20 24 24 C 1.38194 * 119.94627 * 259.99987 * 19 4 2 25 25 O 1.36102 * 120.78373 * 180.26795 * 23 22 21 26 26 C 1.43172 * 116.71760 * 342.81131 * 25 23 22 27 27 C 1.53461 * 108.25249 * 46.16448 * 26 25 23 28 28 O 1.36107 * 119.39477 * 179.53667 * 22 21 20 29 29 H 1.08999 * 109.46883 * 299.99665 * 1 2 3 30 30 H 1.09002 * 109.47256 * 59.99930 * 1 2 3 31 31 H 1.09001 * 109.46796 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47384 * 240.00495 * 2 1 3 33 33 H 1.09002 * 109.47553 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47851 * 300.00484 * 3 2 1 35 35 H 1.09007 * 109.47197 * 60.00179 * 3 2 1 36 36 H 0.97000 * 119.99484 * 264.99304 * 6 4 2 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 39 39 H 0.96998 * 120.00709 * 180.02562 * 14 13 11 40 40 H 1.08005 * 119.93507 * 0.02562 * 20 19 4 41 41 H 1.08000 * 119.96759 * 180.28755 * 21 20 19 42 42 H 1.07999 * 119.96810 * 359.97438 * 24 19 4 43 43 H 1.08998 * 109.70623 * 165.85843 * 26 25 23 44 44 H 1.08999 * 109.70438 * 286.47249 * 26 25 23 45 45 H 1.09004 * 109.71013 * 59.94881 * 27 26 25 46 46 H 1.08999 * 109.71475 * 180.58080 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 7 3.5051 -0.7207 1.2494 7 6 4.1785 0.3372 1.7430 8 8 3.5716 1.2890 2.1867 9 6 5.6855 0.3404 1.7376 10 16 6.2881 1.8899 2.4532 11 6 8.0262 1.6302 2.3257 12 1 8.4053 0.7134 1.8987 13 6 8.9081 2.6042 2.7728 14 7 10.2065 2.4104 2.6771 15 14 8.2523 4.1908 3.5093 16 1 8.0834 4.0234 4.9751 17 1 9.2114 5.2931 3.2442 18 1 6.9408 4.5171 2.8940 19 6 1.5377 -2.1421 1.2491 20 6 2.1695 -3.0974 0.4746 21 6 1.7146 -4.4023 0.4754 22 6 0.6155 -4.7546 1.2446 23 6 -0.0219 -3.7936 2.0202 24 6 0.4429 -2.4867 2.0188 25 8 -1.0987 -4.1189 2.7865 26 6 -1.7614 -5.3495 2.4762 27 6 -0.6945 -6.4377 2.2958 28 8 0.1733 -6.0417 1.2279 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8898 35 1 1.6766 1.9564 0.8901 36 1 3.9903 -1.4819 0.8944 37 1 6.0527 -0.4994 2.3276 38 1 6.0453 0.2493 0.7128 39 1 10.8229 3.0910 2.9900 40 1 3.0225 -2.8241 -0.1289 41 1 2.2128 -5.1476 -0.1268 42 1 -0.0512 -1.7378 2.6199 43 1 -2.4306 -5.6224 3.2921 44 1 -2.3317 -5.2374 1.5542 45 1 -0.1198 -6.5453 3.2158 46 1 -1.1736 -7.3849 2.0481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036760322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:02 Heat of formation + Delta-G solvation = -90.500098 kcal Electronic energy + Delta-G solvation = -28508.613919 eV Core-core repulsion = 24490.013734 eV Total energy + Delta-G solvation = -4018.600185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65425 -40.09097 -38.28030 -37.61623 -35.95117 -33.36306 -32.42450 -31.60619 -31.14679 -29.69484 -28.71308 -26.92266 -26.02380 -25.56387 -24.51344 -23.06265 -21.19822 -20.60326 -19.89794 -19.02638 -17.93278 -17.63586 -17.45914 -16.52411 -16.03877 -15.86167 -15.49847 -15.41550 -14.95781 -14.92215 -14.77830 -14.36771 -14.20782 -14.01316 -13.93803 -13.53178 -13.35459 -13.04307 -12.78241 -12.66080 -12.26719 -12.21949 -12.06553 -11.81861 -11.65722 -11.49069 -11.25099 -11.13154 -11.00097 -10.94505 -10.76576 -10.70272 -10.55217 -9.84693 -9.46561 -9.01504 -8.98050 -8.83755 -8.48479 -8.35059 -6.89739 -6.27579 -3.98977 0.91056 0.97903 2.60342 2.75306 2.83756 2.99882 3.26120 3.34208 3.43215 3.51462 3.70023 3.77648 4.24956 4.32449 4.34245 4.38225 4.45135 4.69189 4.74206 4.84012 4.86316 4.94126 4.98310 5.04534 5.08256 5.11520 5.22250 5.30267 5.45294 5.58261 5.62853 5.74069 5.77661 5.81064 5.83371 5.91400 5.97748 6.03658 6.10119 6.15341 6.25656 6.32598 6.50296 6.56393 6.65454 7.03768 7.63179 7.95456 8.43210 8.52394 9.18648 10.81660 Molecular weight = 351.13amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.002236 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.722980 B =12521.764103 C =13197.675996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.141 4.141 4 C 0.195 3.805 5 H 0.098 0.902 6 N -0.731 5.731 7 C 0.533 3.467 8 O -0.512 6.512 9 C -0.125 4.125 10 S -0.140 6.140 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.235 1.235 19 C -0.078 4.078 20 C -0.108 4.108 21 C -0.108 4.108 22 C 0.047 3.953 23 C 0.053 3.947 24 C -0.099 4.099 25 O -0.306 6.306 26 C 0.021 3.979 27 C 0.020 3.980 28 O -0.308 6.308 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.270 0.730 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.278 -17.850 -5.115 31.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.198 4.198 4 C 0.090 3.910 5 H 0.116 0.884 6 N -0.385 5.385 7 C 0.319 3.681 8 O -0.386 6.386 9 C -0.276 4.276 10 S 0.087 5.913 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 C -0.078 4.078 20 C -0.127 4.127 21 C -0.126 4.126 22 C 0.002 3.998 23 C 0.008 3.992 24 C -0.118 4.118 25 O -0.221 6.221 26 C -0.055 4.055 27 C -0.056 4.056 28 O -0.223 6.223 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.140 0.860 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -26.134 -16.223 -4.312 31.061 hybrid contribution 0.849 -1.120 -0.261 1.430 sum -25.285 -17.343 -4.572 31.000 Atomic orbital electron populations 1.21838 0.94763 1.01717 1.02035 1.21508 0.95909 0.97274 0.97139 1.21897 1.01945 0.94440 1.01566 1.19798 0.80435 0.90883 0.99881 0.88409 1.46091 1.05881 1.21249 1.65303 1.20192 0.89408 0.81931 0.76569 1.90707 1.69637 1.33719 1.44565 1.23292 0.93405 1.05223 1.05648 1.84764 1.06258 1.19191 1.81125 1.22325 0.88242 1.08402 1.47896 0.89413 1.24717 0.94116 0.98222 0.94298 1.69937 1.01272 1.35154 1.45375 0.86735 0.81072 0.83093 0.80944 1.19244 1.19995 1.15893 1.19645 0.95768 0.95425 0.97012 1.20722 1.00517 0.91764 0.99670 1.20399 0.94411 0.97088 1.00739 1.18902 0.96444 0.83332 1.01103 1.18800 0.90083 0.93544 0.96754 1.20235 0.97818 0.93013 1.00745 1.86326 1.41155 1.39995 1.54630 1.23628 0.94622 0.83359 1.03885 1.23636 0.92001 0.98871 0.91053 1.86315 1.63635 1.24928 1.47399 0.92438 0.92523 0.92594 0.91109 0.92117 0.93535 0.91641 0.76689 0.88578 0.88531 0.91966 0.84902 0.84588 0.84518 0.86039 0.90467 0.90387 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.78 37.16 0.33 -1.04 16 2 C -0.10 -1.07 2.67 -90.62 -0.24 -1.31 16 3 C -0.14 -1.88 7.72 37.16 0.29 -1.59 16 4 C 0.20 2.23 2.04 -69.08 -0.14 2.09 16 5 H 0.10 1.29 7.43 -51.93 -0.39 0.90 16 6 N -0.73 -9.13 4.91 -54.93 -0.27 -9.40 16 7 C 0.53 9.03 6.20 -10.98 -0.07 8.97 16 8 O -0.51 -10.28 12.98 5.55 0.07 -10.21 16 9 C -0.13 -2.37 6.16 36.01 0.22 -2.15 16 10 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 11 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 12 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 13 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 15 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.23 -5.94 6.74 56.52 0.38 -5.56 16 19 C -0.08 -0.78 4.05 -104.63 -0.42 -1.20 16 20 C -0.11 -0.97 9.04 -39.59 -0.36 -1.33 16 21 C -0.11 -0.99 9.96 -39.43 -0.39 -1.38 16 22 C 0.05 0.48 6.49 -39.14 -0.25 0.22 16 23 C 0.05 0.56 6.49 -39.14 -0.25 0.30 16 24 C -0.10 -1.02 8.62 -39.42 -0.34 -1.36 16 25 O -0.31 -2.96 10.42 -32.85 -0.34 -3.30 16 26 C 0.02 0.12 7.26 37.40 0.27 0.39 16 27 C 0.02 0.11 7.26 37.40 0.27 0.39 16 28 O -0.31 -2.86 10.42 -32.86 -0.34 -3.20 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.50 6.64 -51.93 -0.34 0.16 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.94 5.77 -51.93 -0.30 0.64 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.97 7.53 -51.92 -0.39 0.58 16 36 H 0.40 3.99 6.88 -40.82 -0.28 3.71 16 37 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 38 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.13 0.96 6.93 -52.48 -0.36 0.59 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.14 1.33 8.03 -52.49 -0.42 0.90 16 43 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -34.56 383.27 -8.64 -43.20 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.72 Total: 2.33 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.88 Total: -10.97 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.51 Total: -35.21 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.61 Total: -16.71 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.56 -8.64 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036760322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.301 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds