Wall clock time and date at job start Tue Mar 31 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.53006 * 109.46623 * 119.99820 * 2 1 3 5 5 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 6 6 N 1.46504 * 109.46883 * 60.00141 * 4 2 1 7 7 C 1.34779 * 119.99783 * 274.99286 * 6 4 2 8 8 O 1.21284 * 119.99864 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99670 * 180.02562 * 7 6 4 10 10 S 1.81008 * 109.46889 * 180.02562 * 9 7 6 11 11 C 1.76191 * 99.99854 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00465 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99994 * 179.97438 * 11 10 9 14 14 N 1.31636 * 119.99641 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00000 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46672 * 120.00525 * 15 13 11 18 18 H 1.48504 * 109.47093 * 239.99947 * 15 13 11 19 19 C 1.50699 * 109.46866 * 179.97438 * 4 2 1 20 20 C 1.38256 * 119.94335 * 280.00316 * 19 4 2 21 21 C 1.38195 * 120.11692 * 180.02562 * 20 19 4 22 22 C 1.38710 * 120.06373 * 0.02562 * 21 20 19 23 23 C 1.38978 * 119.81657 * 359.88670 * 22 21 20 24 24 C 1.38193 * 119.94436 * 99.72242 * 19 4 2 25 25 O 1.36103 * 120.77763 * 180.36365 * 23 22 21 26 26 C 1.43182 * 116.69622 * 342.51901 * 25 23 22 27 27 C 1.53474 * 108.23157 * 46.30527 * 26 25 23 28 28 O 1.36109 * 119.40435 * 179.64864 * 22 21 20 29 29 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 31 31 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47362 * 239.99268 * 2 1 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 35 35 H 1.08996 * 109.46952 * 59.99813 * 3 2 1 36 36 H 0.97003 * 120.00173 * 95.00359 * 6 4 2 37 37 H 1.08997 * 109.47117 * 299.99744 * 9 7 6 38 38 H 1.08999 * 109.47222 * 60.00471 * 9 7 6 39 39 H 0.96995 * 119.99754 * 179.97438 * 14 13 11 40 40 H 1.08004 * 119.94385 * 0.03761 * 20 19 4 41 41 H 1.08000 * 119.97317 * 180.02562 * 21 20 19 42 42 H 1.08003 * 119.96783 * 359.97438 * 24 19 4 43 43 H 1.08998 * 109.71050 * 165.99133 * 26 25 23 44 44 H 1.08993 * 109.70922 * 286.62180 * 26 25 23 45 45 H 1.08999 * 109.70574 * 59.99103 * 27 26 25 46 46 H 1.09008 * 109.70001 * 180.60844 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 1.6765 -0.2074 2.1392 6 7 1.5515 -2.1025 1.2493 7 6 0.3295 -2.3851 1.7426 8 8 -0.3660 -1.4960 2.1861 9 6 -0.1727 -3.8060 1.7430 10 16 -1.8323 -3.8591 2.4635 11 6 -2.1639 -5.5852 2.3409 12 1 -1.4256 -6.2480 1.9143 13 6 -3.3737 -6.0934 2.7937 14 7 -4.2733 -5.2856 3.3142 15 14 -3.7255 -7.9233 2.6632 16 1 -2.5619 -8.6082 2.0453 17 1 -3.9640 -8.4794 4.0194 18 1 -4.9304 -8.1369 1.8217 19 6 3.5469 -0.7218 1.2491 20 6 4.2365 -1.6399 0.4790 21 6 5.6184 -1.6440 0.4765 22 6 6.3174 -0.7269 1.2474 23 6 5.6242 0.1972 2.0200 24 6 4.2372 0.1991 2.0141 25 8 6.2902 1.1106 2.7780 26 6 7.6703 0.8398 3.0466 27 6 8.3424 0.4217 1.7317 28 8 7.6783 -0.7476 1.2404 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.1076 -2.8136 0.8944 37 1 -0.2092 -4.1788 0.7194 38 1 0.4999 -4.4289 2.3328 39 1 -5.1188 -5.6406 3.6303 40 1 3.6942 -2.3551 -0.1218 41 1 6.1548 -2.3620 -0.1262 42 1 3.6961 0.9184 2.6109 43 1 8.1517 1.7365 3.4367 44 1 7.7516 0.0322 3.7741 45 1 8.2559 1.2272 1.0025 46 1 9.3942 0.1989 1.9113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036760323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:07 Heat of formation + Delta-G solvation = -90.699973 kcal Electronic energy + Delta-G solvation = -28451.283774 eV Core-core repulsion = 24432.674922 eV Total energy + Delta-G solvation = -4018.608852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62447 -40.00437 -38.20474 -37.59066 -35.87977 -33.27117 -32.41294 -31.56486 -31.11210 -29.58992 -28.63557 -26.85808 -25.98340 -25.42738 -24.45721 -23.02899 -21.15095 -20.49516 -19.83870 -18.99296 -17.89525 -17.60487 -17.42620 -16.41147 -16.03055 -15.76833 -15.42817 -15.38881 -14.85250 -14.79131 -14.75882 -14.32970 -14.18208 -14.05698 -13.82614 -13.55192 -13.20092 -13.00578 -12.71883 -12.56088 -12.15770 -12.12872 -11.98738 -11.71705 -11.53273 -11.45414 -11.16758 -11.06151 -11.00151 -10.85850 -10.75689 -10.67539 -10.64724 -9.78566 -9.33786 -9.06174 -8.93637 -8.78016 -8.31158 -8.21000 -6.47651 -6.20529 -3.90344 0.94904 1.00753 2.61125 2.83003 3.07441 3.12809 3.22510 3.29173 3.33193 3.40726 3.76741 3.80052 4.21790 4.27785 4.35081 4.41714 4.48531 4.72156 4.88795 4.90259 4.96124 5.00382 5.07704 5.11521 5.14820 5.21197 5.29200 5.46645 5.56116 5.66379 5.73812 5.79054 5.83949 5.87051 5.92015 5.97192 6.04056 6.15736 6.17176 6.20073 6.30436 6.39076 6.53314 6.64859 6.74057 7.06544 7.61431 7.73951 8.36892 8.65580 9.25154 10.86903 Molecular weight = 351.13amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.002182 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.771887 B =12826.750814 C =13672.613842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.146 4.146 4 C 0.195 3.805 5 H 0.098 0.902 6 N -0.733 5.733 7 C 0.534 3.466 8 O -0.510 6.510 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.076 4.076 20 C -0.109 4.109 21 C -0.108 4.108 22 C 0.046 3.954 23 C 0.053 3.947 24 C -0.099 4.099 25 O -0.307 6.307 26 C 0.020 3.980 27 C 0.021 3.979 28 O -0.308 6.308 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.396 0.604 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.267 0.733 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.261 12.933 -6.313 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.204 4.204 4 C 0.090 3.910 5 H 0.116 0.884 6 N -0.388 5.388 7 C 0.320 3.680 8 O -0.384 6.384 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.077 4.077 20 C -0.127 4.127 21 C -0.127 4.127 22 C 0.001 3.999 23 C 0.008 3.992 24 C -0.118 4.118 25 O -0.221 6.221 26 C -0.055 4.055 27 C -0.055 4.055 28 O -0.223 6.223 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.140 0.860 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 24.959 14.458 -5.454 29.355 hybrid contribution 1.175 -2.496 -0.680 2.842 sum 26.134 11.962 -6.134 29.389 Atomic orbital electron populations 1.21898 0.93462 1.02919 1.01568 1.21509 0.97172 0.96016 0.97111 1.21841 1.00834 0.95646 1.02043 1.19793 0.87648 0.83749 0.99859 0.88412 1.46134 1.18476 1.08574 1.65568 1.20218 0.80465 0.90825 0.76460 1.90710 1.55418 1.47889 1.44364 1.23545 1.06318 0.95124 1.05503 1.85374 1.07704 1.11061 1.79026 1.22913 1.05035 0.92883 1.47436 0.90920 1.24994 0.95105 0.98974 0.94565 1.70029 1.07045 1.34918 1.38296 0.86125 0.78356 0.83081 0.77984 1.19632 1.20594 1.20583 1.19668 0.95209 0.95745 0.97094 1.20719 0.92868 0.99354 0.99778 1.20391 0.93530 0.99490 0.99259 1.18898 0.82740 0.99301 0.98934 1.18802 0.92123 0.93293 0.94969 1.20243 0.90123 1.00433 1.00988 1.86323 1.23756 1.44503 1.67547 1.23636 0.80731 1.04079 0.97088 1.23624 0.97897 0.88192 0.95785 1.86307 1.15713 1.38980 1.81293 0.91579 0.93588 0.92065 0.91205 0.92643 0.92547 0.92415 0.76859 0.89311 0.89308 0.92268 0.84935 0.84643 0.84485 0.86039 0.90404 0.90492 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.72 37.16 0.29 -1.70 16 2 C -0.10 -1.12 2.68 -90.62 -0.24 -1.36 16 3 C -0.15 -1.44 8.78 37.16 0.33 -1.12 16 4 C 0.19 2.35 2.04 -69.08 -0.14 2.20 16 5 H 0.10 1.36 7.44 -51.93 -0.39 0.97 16 6 N -0.73 -9.68 4.91 -54.93 -0.27 -9.95 16 7 C 0.53 9.58 6.20 -10.99 -0.07 9.51 16 8 O -0.51 -10.85 12.98 5.55 0.07 -10.77 16 9 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 10 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 11 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 15 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.08 -0.80 4.06 -104.63 -0.42 -1.23 16 20 C -0.11 -1.01 9.04 -39.59 -0.36 -1.37 16 21 C -0.11 -1.02 9.96 -39.42 -0.39 -1.42 16 22 C 0.05 0.48 6.49 -39.13 -0.25 0.23 16 23 C 0.05 0.57 6.49 -39.14 -0.25 0.32 16 24 C -0.10 -1.06 8.59 -39.43 -0.34 -1.40 16 25 O -0.31 -3.05 10.42 -32.86 -0.34 -3.39 16 26 C 0.02 0.12 7.26 37.40 0.27 0.39 16 27 C 0.02 0.12 7.26 37.40 0.27 0.39 16 28 O -0.31 -2.92 10.42 -32.88 -0.34 -3.26 16 29 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.00 5.77 -51.93 -0.30 0.71 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.52 6.62 -51.93 -0.34 0.18 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.40 4.22 6.86 -40.82 -0.28 3.94 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.13 1.00 6.91 -52.48 -0.36 0.64 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.14 1.39 8.04 -52.48 -0.42 0.97 16 43 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.12 0.34 8.14 -51.92 -0.42 -0.09 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -34.86 385.91 -9.15 -44.01 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.68 Total: 2.59 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.90 Total: -12.28 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.46 Total: -35.35 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.61 Total: -17.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.86 -9.15 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036760323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.692 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds