Wall clock time and date at job start Tue Mar 31 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30113 * 124.94915 * 2 1 4 4 C 1.35785 * 109.63969 * 180.26653 * 3 2 1 5 5 C 1.39739 * 133.59821 * 179.74502 * 4 3 2 6 6 C 1.36607 * 119.88973 * 180.02562 * 5 4 3 7 7 C 1.38784 * 120.66383 * 359.96220 * 6 5 4 8 8 C 1.37849 * 120.45291 * 0.02562 * 7 6 5 9 9 C 1.38842 * 119.69229 * 0.02562 * 8 7 6 10 10 N 1.36035 * 124.95187 * 179.85943 * 2 1 3 11 11 C 1.46500 * 126.34683 * 0.02562 * 10 2 1 12 12 C 1.50697 * 109.47182 * 269.68649 * 11 10 2 13 13 O 1.21295 * 119.99992 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00627 * 179.97438 * 12 11 10 15 15 C 1.39990 * 120.00492 * 174.79766 * 14 12 11 16 16 C 1.38923 * 120.00011 * 326.12074 * 15 14 12 17 17 C 1.38007 * 119.99637 * 179.78919 * 16 15 14 18 18 C 1.38914 * 120.00161 * 0.46206 * 17 16 15 19 19 O 1.35774 * 119.99655 * 179.76460 * 18 17 16 20 20 C 1.34813 * 116.99830 * 185.94032 * 19 18 17 21 21 H 1.08004 * 119.99991 * 5.41008 * 20 19 18 22 22 C 1.38628 * 120.00141 * 185.40516 * 20 19 18 23 23 N 1.31579 * 120.00202 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00019 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47435 * 60.00120 * 24 22 20 26 26 H 1.48505 * 109.46991 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47166 * 299.99353 * 24 22 20 28 28 C 1.38906 * 119.99971 * 359.79246 * 18 17 16 29 29 C 1.38001 * 120.00727 * 359.97438 * 28 18 17 30 30 H 1.08992 * 109.47215 * 270.14138 * 1 2 3 31 31 H 1.09006 * 109.47060 * 30.14198 * 1 2 3 32 32 H 1.09008 * 109.47118 * 150.14218 * 1 2 3 33 33 H 1.07997 * 120.05862 * 0.02562 * 5 4 3 34 34 H 1.07991 * 119.67191 * 179.97438 * 6 5 4 35 35 H 1.07995 * 119.77213 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.15805 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47412 * 149.69007 * 11 10 2 38 38 H 1.09004 * 109.47482 * 29.68944 * 11 10 2 39 39 H 0.97004 * 119.99477 * 354.79935 * 14 12 11 40 40 H 1.07990 * 120.00084 * 0.02562 * 16 15 14 41 41 H 1.07994 * 120.00061 * 180.23030 * 17 16 15 42 42 H 0.96989 * 120.00381 * 180.02562 * 23 22 20 43 43 H 1.08008 * 119.99761 * 179.97438 * 28 18 17 44 44 H 1.07994 * 120.00415 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7586 1.4296 -0.0131 6 6 5.9532 0.7670 -0.0185 7 6 5.9931 -0.6203 -0.0162 8 6 4.8253 -1.3528 -0.0089 9 6 3.6018 -0.6965 -0.0044 10 7 2.2863 -1.1150 0.0027 11 6 1.8166 -2.5026 0.0056 12 6 1.6624 -2.9778 1.4274 13 8 1.9191 -2.2307 2.3477 14 7 1.2382 -4.2326 1.6764 15 6 1.1987 -4.7101 2.9917 16 6 2.1546 -4.2950 3.9104 17 6 2.1130 -4.7624 5.2082 18 6 1.1212 -5.6555 5.5934 19 8 1.0832 -6.1190 6.8690 20 6 0.1735 -7.0746 7.1461 21 1 -0.4229 -7.4990 6.3520 22 6 0.0036 -7.5125 8.4504 23 7 0.7298 -6.9951 9.4180 24 14 -1.2565 -8.8370 8.8343 25 1 -0.9208 -10.0725 8.0820 26 1 -1.2428 -9.1260 10.2909 27 1 -2.6070 -8.3660 8.4353 28 6 0.1686 -6.0747 4.6734 29 6 0.2071 -5.6036 3.3768 30 1 -0.3633 0.0025 1.0276 31 1 -0.3633 0.8888 -0.5161 32 1 -0.3634 -0.8913 -0.5117 33 1 4.7391 2.5094 -0.0143 34 1 6.8758 1.3282 -0.0244 35 1 6.9455 -1.1294 -0.0201 36 1 4.8619 -2.4321 -0.0076 37 1 2.5406 -3.1324 -0.5114 38 1 0.8546 -2.5617 -0.5036 39 1 0.9603 -4.8048 0.9440 40 1 2.9278 -3.6035 3.6100 41 1 2.8538 -4.4368 5.9234 42 1 0.6112 -7.3018 10.3305 43 1 -0.6023 -6.7694 4.9728 44 1 -0.5332 -5.9299 2.6615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040536404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:55 Heat of formation + Delta-G solvation = 50.151570 kcal Electronic energy + Delta-G solvation = -29163.660858 eV Core-core repulsion = 25048.008587 eV Total energy + Delta-G solvation = -4115.652271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.42232 -40.24689 -38.78488 -37.58563 -36.62958 -34.40238 -34.15544 -32.26902 -31.66684 -30.73332 -30.32554 -28.93515 -27.74042 -27.11046 -25.37370 -22.69066 -22.33091 -22.28498 -21.87671 -20.64168 -20.02528 -18.22150 -17.86525 -17.57622 -17.47430 -17.09146 -16.25810 -15.60333 -15.53498 -15.43012 -14.65179 -14.48799 -14.36175 -14.16257 -13.99503 -13.72133 -13.60094 -13.42584 -13.30913 -13.02445 -12.88742 -12.74309 -12.46781 -12.09373 -11.92598 -11.72818 -11.65940 -11.65404 -11.61179 -11.10587 -10.85039 -10.73956 -10.51041 -10.09330 -9.97175 -9.77237 -9.35735 -8.79155 -8.44486 -8.31285 -8.22175 -7.04375 -6.50570 -4.09071 0.80128 1.35815 1.88080 2.09584 2.14568 2.58124 2.60554 3.08825 3.09267 3.12616 3.13317 3.75453 3.91392 3.94357 4.18471 4.21146 4.40282 4.49114 4.51229 4.80242 4.84552 4.94411 5.04110 5.20258 5.21484 5.22506 5.28571 5.41337 5.44153 5.53438 5.59129 5.66173 5.95324 5.99572 6.10401 6.13441 6.26877 6.36349 6.37515 6.68302 6.70910 6.73147 6.81608 6.91028 7.03728 7.12538 7.31010 7.49258 7.65978 7.73741 7.93020 8.09462 8.94104 9.63432 10.67036 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.002007 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.229828 B =13946.814135 C =14549.116372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.296 3.704 3 N -0.494 5.494 4 C 0.050 3.950 5 C -0.067 4.067 6 C -0.129 4.129 7 C -0.105 4.105 8 C -0.107 4.107 9 C 0.057 3.943 10 N -0.474 5.474 11 C 0.093 3.907 12 C 0.483 3.517 13 O -0.503 6.503 14 N -0.654 5.654 15 C 0.031 3.969 16 C -0.065 4.065 17 C -0.178 4.178 18 C 0.149 3.851 19 O -0.173 6.173 20 C -0.393 4.393 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.220 4.220 29 C -0.086 4.086 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.403 0.597 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.272 0.728 43 H 0.132 0.868 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 8.101 -23.802 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.031 3.969 3 N -0.214 5.214 4 C -0.067 4.067 5 C -0.086 4.086 6 C -0.149 4.149 7 C -0.124 4.124 8 C -0.128 4.128 9 C -0.051 4.051 10 N -0.164 5.164 11 C -0.034 4.034 12 C 0.267 3.733 13 O -0.377 6.377 14 N -0.300 5.300 15 C -0.061 4.061 16 C -0.085 4.085 17 C -0.197 4.197 18 C 0.094 3.906 19 O -0.076 6.076 20 C -0.469 4.469 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.239 4.239 29 C -0.107 4.107 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.237 0.763 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.150 0.850 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.825 9.411 -22.672 24.709 hybrid contribution -0.609 -1.963 -0.086 2.057 sum 2.215 7.448 -22.758 24.048 Atomic orbital electron populations 1.20415 0.84396 1.04318 1.04667 1.23581 0.95678 0.80409 0.97213 1.70414 1.00946 1.26965 1.23110 1.19008 0.92063 0.90253 1.05405 1.19997 0.89186 0.99701 0.99729 1.20627 0.97410 0.94356 1.02545 1.20860 0.97165 0.94015 1.00378 1.19941 0.89196 0.99358 1.04274 1.18789 0.84978 0.95244 1.06124 1.44647 1.04924 1.05783 1.61050 1.21575 1.03950 0.81808 0.96086 1.20783 0.79078 0.82238 0.91204 1.90824 1.47735 1.53850 1.45282 1.43120 1.65491 1.13347 1.08048 1.17172 1.00009 1.04617 0.84350 1.20555 0.96973 0.98603 0.92336 1.20122 1.00954 1.02555 0.96108 1.19424 0.93072 0.92083 0.85993 1.84007 1.52739 1.49417 1.21477 1.21268 1.17408 1.13924 0.94330 0.89091 1.25312 0.98132 0.98737 0.94346 1.70034 1.37770 1.40831 1.00758 0.85772 0.79769 0.79799 0.78041 1.19467 1.20228 1.19474 1.20983 1.02764 1.06984 0.93210 1.20453 0.96043 0.98189 0.95974 0.88979 0.88447 0.90430 0.85474 0.85426 0.85327 0.86298 0.86166 0.85907 0.76280 0.86081 0.86083 0.91842 0.85003 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.17 36.00 0.37 -0.27 16 2 C 0.30 3.62 7.85 -154.82 -1.22 2.40 16 3 N -0.49 -7.23 11.27 -8.23 -0.09 -7.32 16 4 C 0.05 0.71 7.23 -84.70 -0.61 0.10 16 5 C -0.07 -0.78 10.05 -39.61 -0.40 -1.18 16 6 C -0.13 -1.25 9.96 -39.97 -0.40 -1.65 16 7 C -0.10 -1.01 10.03 -39.52 -0.40 -1.41 16 8 C -0.11 -1.18 10.05 -39.50 -0.40 -1.58 16 9 C 0.06 0.74 6.88 -83.99 -0.58 0.16 16 10 N -0.47 -5.48 2.29 -112.44 -0.26 -5.74 16 11 C 0.09 0.74 6.42 -5.20 -0.03 0.70 16 12 C 0.48 5.96 7.63 -10.99 -0.08 5.88 16 13 O -0.50 -8.93 14.15 5.54 0.08 -8.85 16 14 N -0.65 -7.57 5.34 -9.82 -0.05 -7.63 16 15 C 0.03 0.51 6.27 -83.62 -0.52 -0.02 16 16 C -0.06 -1.24 8.65 -39.41 -0.34 -1.58 16 17 C -0.18 -3.85 9.99 -39.42 -0.39 -4.25 16 18 C 0.15 3.54 6.65 -39.08 -0.26 3.28 16 19 O -0.17 -4.89 9.75 0.02 0.00 -4.89 16 20 C -0.39 -10.74 9.44 30.88 0.29 -10.45 16 21 H 0.09 2.26 5.29 -52.48 -0.28 1.98 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 24 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 28 C -0.22 -4.53 9.12 -39.42 -0.36 -4.89 16 29 C -0.09 -1.45 9.96 -39.41 -0.39 -1.84 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.39 7.01 -51.92 -0.36 0.03 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.12 0.51 6.99 -51.93 -0.36 0.15 16 39 H 0.40 2.89 8.82 -40.82 -0.36 2.53 16 40 H 0.12 2.31 6.45 -52.49 -0.34 1.97 16 41 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.13 2.69 5.71 -52.48 -0.30 2.39 16 44 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -37.14 380.54 -9.62 -46.76 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.94 Total: 6.76 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -5.82 Total: -15.63 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.36 Total: -44.89 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.14 -9.62 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040536404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.908 kcal (2) G-P(sol) polarization free energy of solvation -37.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds