Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00055 * 2 1 4 4 C 1.50703 * 109.47118 * 270.00090 * 3 2 1 5 5 H 1.07996 * 119.99825 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99951 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99991 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47053 * 60.00157 * 8 6 4 10 10 H 1.48501 * 109.46898 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47330 * 300.00029 * 8 6 4 12 12 C 1.34781 * 120.00067 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99835 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99805 * 359.97438 * 12 2 1 15 15 N 1.46493 * 109.47308 * 180.02562 * 14 12 2 16 16 N 1.40021 * 126.26524 * 269.98182 * 15 14 12 17 17 N 1.23647 * 109.32208 * 179.97438 * 16 15 14 18 18 N 1.40026 * 109.31874 * 0.02562 * 17 16 15 19 19 C 1.40166 * 126.26353 * 179.97438 * 18 17 16 20 20 C 1.38833 * 120.07742 * 125.27424 * 19 18 17 21 21 C 1.38115 * 119.94750 * 180.27725 * 20 19 18 22 22 C 1.38301 * 120.08981 * 359.74424 * 21 20 19 23 23 C 1.38254 * 120.14499 * 359.97438 * 22 21 20 24 24 C 1.38242 * 120.05701 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.04460 * 179.97438 * 24 23 22 26 26 C 1.35053 * 126.26116 * 90.28473 * 15 14 12 27 27 O 1.21820 * 126.79600 * 0.02562 * 26 15 14 28 28 H 1.08993 * 109.47075 * 269.99912 * 1 2 3 29 29 H 1.09001 * 109.47188 * 30.00281 * 1 2 3 30 30 H 1.09005 * 109.47177 * 149.99933 * 1 2 3 31 31 H 1.09003 * 109.47244 * 29.99588 * 3 2 1 32 32 H 1.09001 * 109.47427 * 150.00049 * 3 2 1 33 33 H 0.97010 * 120.00115 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46994 * 60.00126 * 14 12 2 35 35 H 1.08996 * 109.47532 * 300.00160 * 14 12 2 36 36 H 1.08001 * 120.02479 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.95367 * 179.72239 * 21 20 19 38 38 H 1.07994 * 119.92744 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.97004 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6732 8 14 3.4388 3.4163 -3.4340 9 1 2.1415 3.5943 -4.1343 10 1 4.1812 4.7024 -3.4339 11 1 4.2412 2.3811 -4.1337 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 7 2.3373 -3.5858 -0.0005 16 7 2.8752 -4.2156 -1.1295 17 7 3.6443 -5.1143 -0.7692 18 7 3.6822 -5.1582 0.6299 19 6 4.4384 -6.0425 1.4114 20 6 5.3080 -5.5501 2.3751 21 6 6.0561 -6.4237 3.1398 22 6 5.9361 -7.7884 2.9503 23 6 5.0670 -8.2831 1.9957 24 6 4.3153 -7.4142 1.2270 25 17 3.2246 -8.0357 0.0279 26 6 2.8522 -4.1965 1.0884 27 8 2.6168 -3.9307 2.2537 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.0317 4.4431 -0.8504 34 1 0.7584 -2.5298 -0.8903 35 1 0.7590 -2.5303 0.8896 36 1 5.4024 -4.4845 2.5240 37 1 6.7359 -6.0406 3.8864 38 1 6.5227 -8.4691 3.5494 39 1 4.9753 -9.3494 1.8504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043734909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = 88.085537 kcal Electronic energy + Delta-G solvation = -28025.366256 eV Core-core repulsion = 23805.385732 eV Total energy + Delta-G solvation = -4219.980524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 351.088 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.07082 -39.81090 -39.13833 -38.06103 -36.81743 -35.48575 -34.91061 -33.52021 -32.64589 -31.28919 -30.28562 -29.11098 -27.40157 -25.80958 -24.69209 -23.85048 -23.04646 -22.25029 -21.97772 -19.37542 -18.68455 -17.54819 -17.12739 -16.72621 -16.61615 -16.39390 -16.31116 -15.46753 -15.15703 -15.11332 -14.83541 -14.29895 -14.24890 -13.94342 -13.62865 -13.54108 -13.05069 -12.97161 -12.92869 -12.42821 -12.26499 -12.12382 -11.97712 -11.94841 -11.90207 -11.32457 -11.26394 -11.20017 -10.95605 -10.65929 -10.62052 -10.21673 -9.93688 -9.71199 -9.32655 -9.04442 -8.90099 -8.47677 -7.80846 -6.08896 -4.14276 0.45348 0.72229 0.83974 1.21178 1.71350 2.24933 2.68444 3.05300 3.12628 3.29877 3.34518 3.38119 3.75630 4.02166 4.30594 4.40838 4.50185 4.67139 4.76330 4.80158 4.82856 5.00090 5.03113 5.24828 5.25918 5.34178 5.46171 5.59425 5.64988 5.73192 5.81504 5.86319 5.94948 6.10423 6.30928 6.91242 7.33746 7.39972 7.53197 7.64684 7.86199 8.15716 8.20244 8.74834 8.92009 9.50866 10.99296 Molecular weight = 351.09amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002511 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.498052 B =11147.172246 C =11346.482471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.595 5.595 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.489 3.511 13 O -0.528 6.528 14 C 0.132 3.868 15 N -0.447 5.447 16 N 0.046 4.954 17 N 0.032 4.968 18 N -0.431 5.431 19 C 0.174 3.826 20 C -0.086 4.086 21 C -0.098 4.098 22 C -0.099 4.099 23 C -0.101 4.101 24 C -0.027 4.027 25 Cl -0.049 7.049 26 C 0.660 3.340 27 O -0.514 6.514 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -24.243 6.301 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.328 5.328 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.272 3.728 13 O -0.404 6.404 14 C 0.007 3.993 15 N -0.276 5.276 16 N 0.049 4.951 17 N 0.035 4.965 18 N -0.254 5.254 19 C 0.082 3.918 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.056 4.056 25 Cl -0.020 7.020 26 C 0.359 3.641 27 O -0.382 6.382 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.268 -24.069 5.968 24.830 hybrid contribution -0.135 0.713 -0.545 0.908 sum -1.404 -23.355 5.423 24.018 Atomic orbital electron populations 1.21759 0.80973 1.03026 1.00953 1.48140 1.06408 1.07423 1.70788 1.19352 0.92598 0.77565 0.97731 1.21366 1.36939 1.06420 0.92103 0.92382 1.24938 0.95230 0.96340 0.97543 1.69923 1.38118 1.14383 1.30870 0.86539 0.78426 0.77856 0.84506 1.20161 1.21145 1.20119 1.20332 0.88527 0.85090 0.78827 1.90724 1.13495 1.86705 1.49481 1.21737 0.88654 0.81889 1.06972 1.49410 1.43091 1.32388 1.02725 1.79607 1.03622 1.00591 1.11245 1.79833 1.12366 1.12679 0.91584 1.46851 1.41950 1.33034 1.03588 1.16819 0.95075 0.85536 0.94339 1.21258 0.93034 1.01835 0.94591 1.21182 0.98687 0.92895 0.98938 1.21288 0.97619 0.95698 0.97145 1.21005 0.95777 0.99895 0.95312 1.21007 0.97385 0.91484 0.95727 1.98400 1.61899 1.86825 1.54826 1.16688 0.80908 0.80849 0.85690 1.91150 1.65080 1.68426 1.13529 0.93114 0.90095 0.92396 0.94587 0.93810 0.92575 0.85227 0.85397 0.83969 0.84022 0.84160 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.24 59.85 0.61 1.70 16 2 N -0.59 -12.10 2.86 -182.96 -0.52 -12.62 16 3 C 0.25 6.34 5.16 -5.19 -0.03 6.32 16 4 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 C 0.49 9.97 7.74 -10.98 -0.09 9.88 16 13 O -0.53 -13.46 16.01 5.55 0.09 -13.37 16 14 C 0.13 1.92 5.43 -5.20 -0.03 1.90 16 15 N -0.45 -7.37 3.11 -66.22 -0.21 -7.58 16 16 N 0.05 0.75 13.55 60.35 0.82 1.57 16 17 N 0.03 0.49 12.52 60.35 0.76 1.25 16 18 N -0.43 -6.65 3.25 -13.98 -0.05 -6.69 16 19 C 0.17 2.26 6.09 -83.56 -0.51 1.75 16 20 C -0.09 -0.99 9.61 -39.41 -0.38 -1.37 16 21 C -0.10 -0.77 10.04 -39.60 -0.40 -1.17 16 22 C -0.10 -0.63 10.04 -39.55 -0.40 -1.03 16 23 C -0.10 -0.77 9.82 -39.57 -0.39 -1.16 16 24 C -0.03 -0.29 6.34 -39.32 -0.25 -0.54 16 25 Cl -0.05 -0.53 27.61 -51.86 -1.43 -1.96 16 26 C 0.66 11.42 8.58 -86.42 -0.74 10.68 16 27 O -0.51 -9.78 17.64 5.08 0.09 -9.69 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.60 6.44 -51.93 -0.33 0.27 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.13 1.42 7.40 -51.93 -0.38 1.04 16 35 H 0.13 1.52 8.08 -51.93 -0.42 1.10 16 36 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -36.55 366.61 -6.24 -42.79 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -4.02 Total: -3.72 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -3.01 Total: 13.51 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 1.54 Total: -49.82 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.18 Total: -23.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.55 -6.24 -42.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043734909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.877 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds