Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34973 * 125.97079 * 2 1 4 4 C 1.35241 * 107.85853 * 179.71223 * 3 2 1 5 5 C 1.40420 * 107.86767 * 0.42584 * 4 3 2 6 6 N 1.40072 * 125.97553 * 179.82975 * 5 4 3 7 7 C 1.34783 * 119.99918 * 359.71905 * 6 5 4 8 8 O 1.21797 * 119.99687 * 359.97438 * 7 6 5 9 9 C 1.41458 * 120.00046 * 179.97438 * 7 6 5 10 10 C 1.35464 * 120.00192 * 179.97438 * 9 7 6 11 11 C 1.46381 * 120.00408 * 180.02562 * 10 9 7 12 12 C 1.36664 * 126.78116 * 0.02562 * 11 10 9 13 13 N 1.35622 * 109.69303 * 179.51686 * 12 11 10 14 14 C 1.46494 * 124.78364 * 179.91762 * 13 12 11 15 15 C 1.50695 * 109.47387 * 265.77075 * 14 13 12 16 16 H 1.08000 * 120.00030 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00129 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00166 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47501 * 89.99713 * 19 17 15 21 21 H 1.48503 * 109.47466 * 210.00094 * 19 17 15 22 22 H 1.48504 * 109.47019 * 329.99677 * 19 17 15 23 23 C 1.37990 * 110.43141 * 0.59199 * 13 12 11 24 24 C 1.39133 * 133.12725 * 179.30167 * 23 13 12 25 25 C 1.37772 * 119.92927 * 180.02562 * 24 23 13 26 26 C 1.38740 * 120.63473 * 0.02562 * 25 24 23 27 27 C 1.37779 * 120.29480 * 0.02562 * 26 25 24 28 28 C 1.39246 * 119.67602 * 0.23045 * 27 26 25 29 29 N 1.31234 * 108.04886 * 359.56989 * 5 4 3 30 30 H 1.09002 * 109.46831 * 270.00020 * 1 2 3 31 31 H 1.09002 * 109.47183 * 29.99901 * 1 2 3 32 32 H 1.09000 * 109.47530 * 149.99754 * 1 2 3 33 33 H 1.07995 * 126.07159 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.06004 * 180.26303 * 4 3 2 35 35 H 0.96997 * 120.00053 * 179.71616 * 6 5 4 36 36 H 1.08002 * 120.00178 * 0.02562 * 9 7 6 37 37 H 1.08002 * 119.99629 * 0.02562 * 10 9 7 38 38 H 1.08002 * 125.15529 * 0.02562 * 12 11 10 39 39 H 1.09010 * 109.46802 * 25.77148 * 14 13 12 40 40 H 1.09001 * 109.47152 * 145.76545 * 14 13 12 41 41 H 0.96996 * 120.00037 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.03249 * 0.02755 * 24 23 13 43 43 H 1.08004 * 119.68176 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.85457 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.15875 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0924 0.0000 4 6 3.5432 0.6719 0.0065 5 6 3.5373 -0.7322 0.0007 6 7 4.6673 -1.5599 0.0011 7 6 5.9007 -1.0164 0.0018 8 8 6.0325 0.1944 0.0016 9 6 7.0419 -1.8522 0.0028 10 6 8.2816 -1.3059 0.0030 11 6 9.4626 -2.1708 0.0034 12 6 9.4761 -3.5374 0.0032 13 7 10.7574 -3.9817 -0.0070 14 6 11.1527 -5.3923 -0.0085 15 6 11.4011 -5.8460 1.4069 16 1 11.2773 -5.1528 2.2257 17 6 11.7864 -7.1461 1.6566 18 7 11.9367 -7.9904 0.6596 19 14 12.0936 -7.7086 3.4112 20 1 10.8313 -8.2338 3.9908 21 1 13.1230 -8.7789 3.4149 22 1 12.5707 -6.5602 4.2228 23 6 11.6363 -2.9179 -0.0005 24 6 13.0249 -2.8314 0.0064 25 6 13.6367 -1.5970 0.0125 26 6 12.8810 -0.4335 0.0123 27 6 11.5048 -0.4985 0.0066 28 6 10.8733 -1.7395 0.0058 29 7 2.2878 -1.1336 0.0004 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.9249 2.1197 0.0004 34 1 4.4188 1.3041 0.0122 35 1 4.5622 -2.5241 0.0009 36 1 6.9250 -2.9258 0.0025 37 1 8.3985 -0.2323 0.0028 38 1 8.5992 -4.1679 0.0023 39 1 10.3559 -5.9925 -0.4479 40 1 12.0640 -5.5136 -0.5942 41 1 12.2081 -8.9049 0.8352 42 1 13.6225 -3.7310 0.0070 43 1 14.7149 -1.5345 0.0174 44 1 13.3737 0.5275 0.0176 45 1 10.9187 0.4086 0.0069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044873040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = 125.481431 kcal Electronic energy + Delta-G solvation = -28221.519115 eV Core-core repulsion = 24206.852054 eV Total energy + Delta-G solvation = -4014.667061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.148 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.40208 -40.87319 -39.56203 -36.67755 -35.12656 -34.34863 -33.10850 -32.44063 -31.05287 -30.14639 -29.74626 -28.38687 -27.26813 -26.24338 -24.28264 -23.08923 -22.24082 -21.64188 -20.94874 -20.60109 -19.83580 -18.46295 -17.41224 -17.23155 -16.87579 -16.23752 -15.92061 -15.78811 -15.67366 -15.12072 -14.78973 -14.61412 -14.28470 -14.14863 -13.80933 -13.53009 -13.32930 -13.09470 -13.04131 -13.00336 -12.74806 -12.50498 -12.41141 -11.72871 -11.65487 -11.37871 -11.15078 -11.04279 -10.90774 -10.86078 -10.82427 -10.54673 -10.37215 -10.26254 -9.75767 -9.55227 -8.94268 -8.80202 -8.76272 -8.25238 -7.76325 -6.93977 -6.39143 -4.50822 0.94713 1.63490 1.80695 2.12716 2.14191 2.71171 3.12084 3.19375 3.22229 3.27702 3.29614 3.57475 3.82920 4.17592 4.37535 4.41835 4.63911 4.85946 4.93139 4.97287 5.07616 5.09453 5.16373 5.29796 5.36755 5.43359 5.51853 5.63587 5.65476 5.73501 5.77864 5.99054 6.05050 6.16213 6.21352 6.35193 6.46526 6.52164 6.74493 6.79063 6.80229 6.91333 6.93300 6.99134 7.14000 7.17721 7.29112 7.50988 7.69372 7.80220 7.82517 7.85834 8.24985 8.56434 9.18071 10.66128 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.002171 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.330340 B =12896.181684 C =15036.291978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.377 5.377 3 C 0.057 3.943 4 C -0.265 4.265 5 C 0.307 3.693 6 N -0.640 5.640 7 C 0.573 3.427 8 O -0.539 6.539 9 C -0.301 4.301 10 C 0.097 3.903 11 C -0.229 4.229 12 C 0.135 3.865 13 N -0.434 5.434 14 C 0.229 3.771 15 C -0.546 4.546 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.905 3.095 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.095 3.905 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.144 4.144 27 C -0.088 4.088 28 C -0.083 4.083 29 N -0.332 5.332 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.415 0.585 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.171 0.829 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.269 0.731 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 14.628 -2.935 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.162 5.162 3 C -0.089 4.089 4 C -0.296 4.296 5 C 0.051 3.949 6 N -0.288 5.288 7 C 0.368 3.632 8 O -0.418 6.418 9 C -0.323 4.323 10 C 0.076 3.924 11 C -0.236 4.236 12 C -0.003 4.003 13 N -0.108 5.108 14 C 0.111 3.889 15 C -0.584 4.584 16 H 0.085 0.915 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.195 1.195 23 C -0.011 4.011 24 C -0.121 4.121 25 C -0.139 4.139 26 C -0.163 4.163 27 C -0.107 4.107 28 C -0.087 4.087 29 N -0.163 5.163 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.192 0.808 34 H 0.191 0.809 35 H 0.251 0.749 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.188 0.812 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.447 13.886 -2.999 20.261 hybrid contribution 0.488 -0.542 0.985 1.226 sum -13.959 13.344 -2.014 19.416 Atomic orbital electron populations 1.21790 0.74148 1.04293 1.03147 1.48007 1.06055 1.03106 1.59005 1.22600 0.90814 0.93447 1.02024 1.21937 0.97875 0.93384 1.16364 1.19229 0.86756 0.90779 0.98183 1.42737 1.02841 1.09726 1.73483 1.17066 0.82347 0.88380 0.75379 1.90720 1.86138 1.14954 1.49983 1.21192 0.91754 0.99960 1.19440 1.21616 0.89564 0.98828 0.82427 1.18837 0.91076 0.91747 1.21943 1.22296 0.87999 0.94001 0.96011 1.44780 1.03905 1.08429 1.53662 1.19883 0.97951 0.71800 0.99219 1.21309 1.48800 0.96685 0.91607 0.91547 1.24942 0.94398 0.96108 0.98192 1.69909 1.45781 1.05609 1.31254 0.86360 0.78332 0.78600 0.83506 1.20198 1.20794 1.19536 1.18292 0.91908 0.86518 1.04355 1.20217 0.91072 0.98385 1.02467 1.20706 0.99233 0.91606 1.02352 1.20792 0.93476 0.97855 1.04197 1.20325 0.94073 0.95451 1.00840 1.19005 0.91964 0.92723 1.05032 1.77334 0.99519 1.07624 1.31823 0.91004 0.89541 0.89485 0.80754 0.80908 0.74907 0.85781 0.85239 0.81211 0.93056 0.93279 0.92092 0.85793 0.86268 0.86556 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.59 11.47 59.85 0.69 1.28 16 2 N -0.38 -3.97 4.01 -68.17 -0.27 -4.25 16 3 C 0.06 0.57 11.48 -17.24 -0.20 0.37 16 4 C -0.27 -3.54 9.60 -39.83 -0.38 -3.92 16 5 C 0.31 4.34 8.10 -154.46 -1.25 3.09 16 6 N -0.64 -8.31 5.44 -13.78 -0.07 -8.38 16 7 C 0.57 8.25 7.52 -15.03 -0.11 8.13 16 8 O -0.54 -8.99 13.22 5.10 0.07 -8.92 16 9 C -0.30 -4.03 9.32 -39.35 -0.37 -4.39 16 10 C 0.10 1.41 9.68 -37.30 -0.36 1.05 16 11 C -0.23 -3.81 6.24 -103.41 -0.65 -4.45 16 12 C 0.13 2.34 10.66 -16.45 -0.18 2.16 16 13 N -0.43 -8.74 2.73 -115.37 -0.32 -9.06 16 14 C 0.23 5.24 5.70 -5.20 -0.03 5.21 16 15 C -0.55 -13.84 9.39 -34.44 -0.32 -14.17 16 16 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -23.70 13.29 55.43 0.74 -22.96 16 19 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.10 1.86 6.79 -83.95 -0.57 1.29 16 24 C -0.10 -1.84 9.97 -39.42 -0.39 -2.23 16 25 C -0.12 -1.82 10.01 -39.57 -0.40 -2.21 16 26 C -0.14 -2.07 10.03 -39.56 -0.40 -2.46 16 27 C -0.09 -1.37 10.09 -39.37 -0.40 -1.76 16 28 C -0.08 -1.49 6.36 -104.93 -0.67 -2.15 16 29 N -0.33 -4.54 12.59 31.43 0.40 -4.14 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.17 2.48 5.90 -52.48 -0.31 2.17 16 35 H 0.42 4.34 8.78 -40.82 -0.36 3.98 16 36 H 0.12 1.41 6.88 -52.49 -0.36 1.05 16 37 H 0.13 1.85 7.45 -52.49 -0.39 1.46 16 38 H 0.17 2.45 7.19 -52.49 -0.38 2.07 16 39 H 0.05 1.19 8.11 -51.92 -0.42 0.76 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 43 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -31.81 393.29 -10.20 -42.01 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.57 Total: 8.19 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -6.08 Total: -13.52 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.47 Total: -48.79 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.81 -10.20 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044873040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.491 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds