Wall clock time and date at job start Tue Mar 31 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39728 * 125.77637 * 2 1 4 4 C 1.36144 * 107.86170 * 180.02562 * 3 2 1 5 5 N 1.39378 * 126.26732 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99852 * 0.04369 * 5 4 3 7 7 O 1.21586 * 119.99921 * 359.97438 * 6 5 4 8 8 C 1.47632 * 119.99746 * 180.02562 * 6 5 4 9 9 C 1.39723 * 120.08329 * 359.72069 * 8 6 5 10 10 C 1.37710 * 119.91986 * 179.71866 * 9 8 6 11 11 C 1.39054 * 120.08189 * 0.56078 * 10 9 8 12 12 N 1.39834 * 119.92423 * 179.74083 * 11 10 9 13 13 C 1.35838 * 126.10066 * 359.68798 * 12 11 10 14 14 C 1.35291 * 107.61533 * 179.83880 * 13 12 11 15 15 C 1.39954 * 107.96726 * 0.42670 * 14 13 12 16 16 N 1.30834 * 108.36917 * 359.73604 * 15 14 13 17 17 C 1.39059 * 120.15930 * 359.71520 * 11 10 9 18 18 C 1.37725 * 120.07793 * 359.97438 * 17 11 10 19 19 N 1.35814 * 107.46969 * 359.97438 * 4 3 2 20 20 C 1.46498 * 126.09044 * 179.73737 * 19 4 3 21 21 C 1.50694 * 109.47376 * 90.00310 * 20 19 4 22 22 H 1.08007 * 119.99887 * 359.97438 * 21 20 19 23 23 C 1.37881 * 120.00427 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00343 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99624 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47280 * 90.00352 * 25 23 21 27 27 H 1.48504 * 109.47412 * 210.00275 * 25 23 21 28 28 H 1.48496 * 109.47564 * 330.00139 * 25 23 21 29 29 N 1.30829 * 125.77802 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47269 * 89.99987 * 1 2 3 31 31 H 1.09002 * 109.46867 * 209.99828 * 1 2 3 32 32 H 1.08995 * 109.47363 * 329.99792 * 1 2 3 33 33 H 1.08000 * 126.06862 * 0.04125 * 3 2 1 34 34 H 0.96997 * 120.00232 * 180.02562 * 5 4 3 35 35 H 1.08007 * 120.03484 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.96276 * 180.27599 * 10 9 8 37 37 H 1.07999 * 126.19213 * 359.96871 * 13 12 11 38 38 H 1.07993 * 126.01449 * 180.13992 * 14 13 12 39 39 H 1.07993 * 125.81951 * 179.73663 * 15 14 13 40 40 H 1.08000 * 119.96593 * 180.02562 * 17 11 10 41 41 H 1.07997 * 120.04011 * 179.97438 * 18 17 11 42 42 H 1.09007 * 109.46971 * 209.99890 * 20 19 4 43 43 H 1.09006 * 109.47215 * 329.99796 * 20 19 4 44 44 H 0.97001 * 120.00291 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6193 0.7148 -0.0006 5 7 4.7495 1.5305 -0.0013 6 6 4.6129 2.8713 -0.0005 7 8 3.5037 3.3694 0.0003 8 6 5.8100 3.7353 -0.0019 9 6 7.0854 3.1648 0.0020 10 6 8.1998 3.9738 -0.0051 11 6 8.0569 5.3570 -0.0043 12 7 9.1908 6.1754 -0.0061 13 6 10.4821 5.7538 -0.0025 14 6 11.2715 6.8526 -0.0095 15 6 10.4422 7.9800 -0.0076 16 7 9.1976 7.5764 -0.0055 17 6 6.7892 5.9284 -0.0024 18 6 5.6702 5.1255 -0.0017 19 7 3.6088 -0.6433 -0.0004 20 6 4.7859 -1.5154 -0.0062 21 6 5.1967 -1.8143 1.4125 22 1 4.6372 -1.3961 2.2362 23 6 6.2875 -2.6209 1.6590 24 7 6.6463 -2.8814 2.8972 25 14 7.2556 -3.3436 0.2343 26 1 8.3453 -2.4100 -0.1479 27 1 7.8403 -4.6460 0.6433 28 1 6.3509 -3.5496 -0.9251 29 7 2.2719 -1.0614 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.9874 2.1599 0.0006 34 1 5.6344 1.1332 -0.0020 35 1 7.1971 2.0905 0.0064 36 1 9.1860 3.5335 -0.0066 37 1 10.8179 4.7274 0.0026 38 1 12.3514 6.8586 -0.0111 39 1 10.7731 9.0080 -0.0079 40 1 6.6819 7.0031 -0.0022 41 1 4.6859 5.5699 0.0002 42 1 4.5453 -2.4469 -0.5187 43 1 5.6050 -1.0167 -0.5243 44 1 7.4134 -3.4491 3.0706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048290742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:21 Heat of formation + Delta-G solvation = 163.496158 kcal Electronic energy + Delta-G solvation = -29147.263265 eV Core-core repulsion = 25068.818736 eV Total energy + Delta-G solvation = -4078.444530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.144 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87128 -41.03571 -39.88024 -38.42511 -34.94985 -33.92478 -33.79812 -32.22727 -31.67674 -30.48644 -30.00591 -29.39755 -28.10114 -26.34355 -24.75287 -23.51246 -22.67489 -22.04492 -21.01492 -20.79950 -19.91451 -19.46956 -18.70086 -17.47028 -17.22550 -16.61649 -15.80000 -15.65990 -15.61459 -15.29657 -15.00615 -14.70684 -14.43465 -14.18354 -14.05688 -13.90964 -13.75087 -13.21176 -13.12453 -12.98353 -12.81505 -12.74921 -12.64263 -12.35089 -11.93220 -11.86084 -11.61267 -11.20188 -11.09894 -10.89095 -10.71585 -10.54077 -10.28484 -10.07629 -9.80665 -9.64550 -9.55859 -9.46772 -8.91104 -8.47737 -7.98985 -7.53794 -6.37748 -4.42481 0.13565 0.94152 1.55653 1.95314 2.34662 2.38031 2.64159 2.98191 3.01240 3.12907 3.14053 3.41492 3.61135 3.68470 4.02520 4.09502 4.28361 4.44914 4.48520 4.51798 4.81263 4.87912 4.91046 5.07831 5.22280 5.26140 5.27394 5.50700 5.53521 5.57820 5.72397 5.81627 5.92189 5.98244 6.00191 6.08139 6.18278 6.19262 6.26248 6.26808 6.32402 6.59978 6.70250 6.73612 7.15496 7.19563 7.38890 7.46936 7.69945 8.09619 8.23416 8.51800 8.68991 9.16557 10.74382 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.002866 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.465840 B = 9768.020650 C =12370.832243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.288 4.288 4 C 0.302 3.698 5 N -0.635 5.635 6 C 0.567 3.433 7 O -0.508 6.508 8 C -0.138 4.138 9 C -0.054 4.054 10 C -0.147 4.147 11 C 0.185 3.815 12 N -0.327 5.327 13 C 0.055 3.945 14 C -0.259 4.259 15 C 0.057 3.943 16 N -0.287 5.287 17 C -0.130 4.130 18 C -0.029 4.029 19 N -0.345 5.345 20 C 0.230 3.770 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.081 3.919 24 N -0.882 5.882 25 Si 0.870 3.130 26 H -0.271 1.271 27 H -0.278 1.278 28 H -0.263 1.263 29 N -0.279 5.279 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.414 0.586 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.181 0.819 38 H 0.156 0.844 39 H 0.191 0.809 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.056 0.944 43 H 0.033 0.967 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 18.021 -8.016 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.319 4.319 4 C 0.081 3.919 5 N -0.281 5.281 6 C 0.355 3.645 7 O -0.383 6.383 8 C -0.142 4.142 9 C -0.073 4.073 10 C -0.168 4.168 11 C 0.092 3.908 12 N -0.103 5.103 13 C -0.086 4.086 14 C -0.287 4.287 15 C -0.131 4.131 16 N -0.106 5.106 17 C -0.150 4.150 18 C -0.049 4.049 19 N -0.131 5.131 20 C 0.111 3.889 21 C -0.585 4.585 22 H 0.100 0.900 23 C -0.124 4.124 24 N -0.518 5.518 25 Si 0.696 3.304 26 H -0.197 1.197 27 H -0.203 1.203 28 H -0.187 1.187 29 N -0.104 5.104 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.182 0.818 34 H 0.251 0.749 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.198 0.802 38 H 0.173 0.827 39 H 0.208 0.792 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.435 17.246 -7.891 19.729 hybrid contribution 2.406 -0.256 -0.425 2.456 sum 7.841 16.990 -8.316 20.477 Atomic orbital electron populations 1.20041 0.87360 1.02665 1.02120 1.22049 0.96630 0.90904 1.01485 1.21295 0.88942 1.00587 1.21098 1.17972 0.87957 0.83029 1.02939 1.42602 1.08280 1.05506 1.71742 1.17976 0.89086 0.80810 0.76677 1.90720 1.25896 1.73796 1.47918 1.19821 0.92523 0.94209 1.07625 1.21224 0.90758 1.00417 0.94896 1.20704 1.00274 0.90348 1.05430 1.17750 0.84962 0.88793 0.99296 1.46029 1.04053 1.04683 1.55566 1.22874 0.83361 1.01212 1.01199 1.21659 1.01120 0.91050 1.14909 1.24133 0.89951 1.00643 0.98376 1.77453 1.21678 0.87527 1.23914 1.20843 0.89557 1.01408 1.03144 1.21164 0.99457 0.91347 0.92913 1.49047 1.06159 1.01827 1.56064 1.19932 0.79263 0.90024 0.99679 1.21203 1.14247 1.32643 0.90370 0.90001 1.24823 0.96620 0.95202 0.95788 1.69870 1.26644 1.36509 1.18798 0.86942 0.80728 0.79818 0.82913 1.19671 1.20303 1.18716 1.77350 0.85767 1.21754 1.25548 0.91282 0.91364 0.90972 0.81843 0.74892 0.84108 0.84350 0.80179 0.82663 0.79250 0.83697 0.83298 0.92658 0.94890 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.07 7.20 -82.46 -0.59 0.48 16 3 C -0.29 -5.75 9.58 -39.78 -0.38 -6.13 16 4 C 0.30 6.21 7.68 -152.74 -1.17 5.04 16 5 N -0.63 -10.78 5.36 -12.26 -0.07 -10.85 16 6 C 0.57 8.91 7.73 -12.43 -0.10 8.82 16 7 O -0.51 -9.07 13.46 5.29 0.07 -9.00 16 8 C -0.14 -1.72 5.88 -104.95 -0.62 -2.33 16 9 C -0.05 -0.57 9.53 -39.22 -0.37 -0.94 16 10 C -0.15 -1.40 9.44 -39.47 -0.37 -1.77 16 11 C 0.19 1.97 6.69 -83.60 -0.56 1.41 16 12 N -0.33 -3.44 3.81 -10.55 -0.04 -3.48 16 13 C 0.05 0.44 10.81 -16.83 -0.18 0.26 16 14 C -0.26 -1.86 10.80 -39.99 -0.43 -2.29 16 15 C 0.06 0.45 12.02 -17.33 -0.21 0.25 16 16 N -0.29 -3.13 11.85 30.64 0.36 -2.77 16 17 C -0.13 -1.38 9.64 -39.46 -0.38 -1.76 16 18 C -0.03 -0.33 9.58 -39.21 -0.38 -0.71 16 19 N -0.35 -7.81 3.62 -61.45 -0.22 -8.04 16 20 C 0.23 5.28 5.09 -5.20 -0.03 5.26 16 21 C -0.55 -14.64 9.94 -34.44 -0.34 -14.99 16 22 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 23 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 24 N -0.88 -25.19 13.96 55.43 0.77 -24.42 16 25 Si 0.87 18.98 27.47 -169.99 -4.67 14.31 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.26 -5.53 6.54 56.52 0.37 -5.17 16 29 N -0.28 -6.33 12.56 33.64 0.42 -5.91 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.16 3.16 5.83 -52.49 -0.31 2.86 16 34 H 0.41 6.26 6.02 -40.82 -0.25 6.01 16 35 H 0.14 1.34 6.39 -52.48 -0.34 1.00 16 36 H 0.14 0.96 6.73 -52.49 -0.35 0.60 16 37 H 0.18 0.90 7.04 -52.49 -0.37 0.53 16 38 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.19 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.15 1.45 7.68 -52.49 -0.40 1.05 16 41 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 42 H 0.06 1.29 7.20 -51.93 -0.37 0.92 16 43 H 0.03 0.67 6.96 -51.93 -0.36 0.31 16 44 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -34.51 378.76 -8.35 -42.86 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.85 Total: 9.49 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -5.84 Total: -7.91 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 1.23 Total: -55.46 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.67 Total: 14.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.51 -8.35 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048290742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.358 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds