Wall clock time and date at job start Tue Mar 31 2020 06:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.36831 * 125.03053 * 2 1 4 4 H 0.96998 * 125.06783 * 359.97438 * 3 2 1 5 5 C 1.37693 * 109.87374 * 179.97438 * 3 2 1 6 6 C 1.39122 * 133.50906 * 179.97438 * 5 3 2 7 7 C 1.37742 * 119.78049 * 180.02562 * 6 5 3 8 8 C 1.38836 * 120.66785 * 359.97438 * 7 6 5 9 9 C 1.36624 * 120.52573 * 0.02562 * 8 7 6 10 10 C 1.39638 * 119.76344 * 0.02562 * 9 8 7 11 11 C 1.34235 * 125.04084 * 179.69464 * 2 1 3 12 12 C 1.50707 * 126.49669 * 359.97438 * 11 2 1 13 13 C 1.53118 * 109.52111 * 239.37345 * 12 11 2 14 14 C 1.53046 * 109.27323 * 182.50565 * 13 12 11 15 15 N 1.46847 * 109.57505 * 59.08571 * 14 13 12 16 16 C 1.46902 * 110.99988 * 174.19342 * 15 14 13 17 17 C 1.53004 * 109.46775 * 294.20733 * 16 15 14 18 18 H 1.09001 * 109.47025 * 55.00180 * 17 16 15 19 19 C 1.47196 * 109.47410 * 295.00113 * 17 16 15 20 20 N 8.29999 * 118.55596 * 174.62718 * 2 1 3 21 21 C 1.53001 * 109.46810 * 174.99862 * 17 16 15 22 22 C 1.50699 * 109.47018 * 185.00103 * 21 17 16 23 23 H 1.08003 * 120.00416 * 0.02562 * 22 21 17 24 24 C 1.37881 * 120.00001 * 180.02562 * 22 21 17 25 25 N 1.31516 * 119.99816 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99939 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.46717 * 90.00063 * 26 24 22 28 28 H 1.48503 * 109.47185 * 209.99697 * 26 24 22 29 29 H 1.48492 * 109.47261 * 330.00160 * 26 24 22 30 30 C 1.46844 * 111.19746 * 298.28916 * 15 14 13 31 31 C 1.53039 * 109.52314 * 61.74441 * 30 15 14 32 32 H 1.08999 * 109.46874 * 95.27649 * 1 2 3 33 33 H 1.08991 * 109.47691 * 335.27540 * 1 2 3 34 34 H 1.09004 * 109.46865 * 215.27276 * 1 2 3 35 35 H 1.07998 * 120.10894 * 0.03944 * 6 5 3 36 36 H 1.08001 * 119.67090 * 179.97438 * 7 6 5 37 37 H 1.07996 * 119.74065 * 180.02562 * 8 7 6 38 38 H 1.07994 * 120.11990 * 179.97438 * 9 8 7 39 39 H 1.08995 * 109.52231 * 359.50606 * 12 11 2 40 40 H 1.08996 * 109.50678 * 302.38303 * 13 12 11 41 41 H 1.09004 * 109.50397 * 62.50352 * 13 12 11 42 42 H 1.08996 * 109.40885 * 299.06859 * 14 13 12 43 43 H 1.08996 * 109.44955 * 179.13012 * 14 13 12 44 44 H 1.08993 * 109.47077 * 54.20716 * 16 15 14 45 45 H 1.08992 * 109.46972 * 174.21100 * 16 15 14 46 46 H 1.08999 * 109.47521 * 304.99969 * 21 17 16 47 47 H 1.08994 * 109.47196 * 65.00246 * 21 17 16 48 48 H 0.97001 * 119.99900 * 180.02562 * 25 24 22 49 49 H 1.09000 * 109.46415 * 301.72407 * 30 15 14 50 50 H 1.09002 * 109.45307 * 181.75240 * 30 15 14 51 51 H 1.09003 * 109.50036 * 180.88025 * 31 30 15 52 52 H 1.08992 * 109.53882 * 60.78234 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1204 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6214 0.7604 0.0006 6 6 4.8098 1.4839 0.0004 7 6 6.0158 0.8185 0.0006 8 6 6.0590 -0.5692 0.0016 9 6 4.9043 -1.2994 0.0018 10 6 3.6705 -0.6454 0.0005 11 6 2.2777 -1.0990 0.0059 12 6 1.8004 -2.5285 0.0140 13 6 2.3362 -3.2397 1.2597 14 6 1.9005 -4.7066 1.2305 15 7 2.4178 -5.3494 0.0158 16 6 2.1356 -6.7911 0.0222 17 6 2.9176 -7.4587 1.1552 18 1 2.6827 -6.9657 2.0985 19 6 4.3608 -7.3456 0.8885 20 7 5.4745 -7.2583 0.6826 21 6 2.5292 -8.9361 1.2414 22 6 3.2052 -9.5646 2.4325 23 1 3.8474 -8.9698 3.0652 24 6 3.0040 -10.8991 2.7148 25 7 3.5936 -11.4475 3.7547 26 14 1.8939 -11.9282 1.6202 27 1 2.6990 -12.5358 0.5303 28 1 1.2618 -13.0029 2.4269 29 1 0.8385 -11.0640 1.0333 30 6 1.8784 -4.7130 -1.1926 31 6 2.3148 -3.2468 -1.2366 32 1 -0.3633 -0.0945 -1.0233 33 1 -0.3634 0.9333 0.4298 34 1 -0.3633 -0.8390 0.5935 35 1 4.7867 2.5636 0.0003 36 1 6.9372 1.3819 0.0000 37 1 7.0129 -1.0755 0.0021 38 1 4.9455 -2.3785 0.0021 39 1 0.7107 -2.5486 0.0234 40 1 3.4247 -3.1845 1.2704 41 1 1.9381 -2.7585 2.1530 42 1 0.8120 -4.7612 1.2350 43 1 2.2935 -5.2194 2.1084 44 1 1.0683 -6.9517 0.1736 45 1 2.4367 -7.2244 -0.9315 46 1 1.4480 -9.0218 1.3501 47 1 2.8446 -9.4483 0.3325 48 1 3.4523 -12.3864 3.9530 49 1 0.7899 -4.7677 -1.1769 50 1 2.2553 -5.2307 -2.0747 51 1 1.9013 -2.7706 -2.1257 52 1 3.4029 -3.1910 -1.2668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051473326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:02 Heat of formation + Delta-G solvation = 66.398659 kcal Electronic energy + Delta-G solvation = -30571.890744 eV Core-core repulsion = 26728.609189 eV Total energy + Delta-G solvation = -3843.281555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 351.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.61832 -39.13071 -37.26803 -36.51655 -34.55344 -33.41125 -32.06027 -31.32044 -30.96059 -30.73059 -29.34014 -27.49129 -26.66868 -24.47568 -23.09818 -22.41586 -22.17549 -21.48651 -21.37046 -19.86259 -19.20086 -17.68249 -16.86547 -16.69053 -16.48271 -15.73664 -15.24430 -15.07861 -14.79646 -14.69783 -14.46568 -14.22848 -14.01331 -13.59764 -13.54108 -13.32688 -13.26441 -13.16840 -12.90731 -12.71801 -12.47731 -12.40388 -12.19819 -12.01301 -11.71779 -11.62474 -11.59216 -11.38765 -11.29780 -11.13848 -11.12325 -10.89147 -10.55754 -10.52611 -10.37174 -10.12856 -9.93300 -9.68465 -9.57687 -9.28425 -8.59338 -8.29101 -8.14935 -7.71477 -6.08262 -4.08602 0.98483 1.51280 2.45037 2.86237 3.28520 3.35936 3.36360 3.75822 3.80893 3.84861 4.02234 4.40273 4.41973 4.58314 4.68395 4.77487 4.85042 4.90543 4.95353 4.97494 5.05631 5.15330 5.25769 5.26918 5.27017 5.30266 5.39533 5.43863 5.47032 5.57311 5.60387 5.60879 5.64136 5.75239 5.77869 5.88489 5.89082 5.98086 5.99354 6.05869 6.14082 6.23071 6.28432 6.34539 6.38298 6.44746 6.55041 6.63737 6.69877 6.97723 7.03918 7.13175 7.21202 7.26672 7.32954 7.66691 8.43610 8.61879 8.95849 9.51687 11.04892 Molecular weight = 351.20amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.002277 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.275009 B =12295.195074 C =13238.366262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.072 3.928 3 N -0.596 5.596 4 H 0.411 0.589 5 C 0.094 3.906 6 C -0.136 4.136 7 C -0.100 4.100 8 C -0.149 4.149 9 C -0.065 4.065 10 C -0.093 4.093 11 C -0.152 4.152 12 C -0.011 4.011 13 C -0.106 4.106 14 C 0.050 3.950 15 N -0.539 5.539 16 C 0.061 3.939 17 C 0.020 3.980 18 H 0.105 0.895 19 C 0.254 3.746 20 N -0.472 5.472 21 C -0.005 4.005 22 C -0.526 4.526 23 H 0.074 0.926 24 C 0.071 3.929 25 N -0.897 5.897 26 Si 0.878 3.122 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.263 1.263 30 C 0.058 3.942 31 C -0.105 4.105 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.036 0.964 47 H 0.020 0.980 48 H 0.264 0.736 49 H 0.032 0.968 50 H 0.073 0.927 51 H 0.062 0.938 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 27.993 -10.044 30.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 N -0.199 5.199 4 H 0.247 0.753 5 C -0.012 4.012 6 C -0.157 4.157 7 C -0.119 4.119 8 C -0.168 4.168 9 C -0.083 4.083 10 C -0.097 4.097 11 C -0.159 4.159 12 C -0.030 4.030 13 C -0.144 4.144 14 C -0.078 4.078 15 N -0.264 5.264 16 C -0.068 4.068 17 C -0.002 4.002 18 H 0.123 0.877 19 C -0.063 4.063 20 N -0.149 5.149 21 C -0.044 4.044 22 C -0.564 4.564 23 H 0.092 0.908 24 C -0.132 4.132 25 N -0.536 5.536 26 Si 0.705 3.295 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.188 1.188 30 C -0.070 4.070 31 C -0.143 4.143 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.054 0.946 47 H 0.039 0.961 48 H 0.074 0.926 49 H 0.050 0.950 50 H 0.091 0.909 51 H 0.080 0.920 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.281 28.128 -10.256 30.591 hybrid contribution -1.855 -0.293 -0.310 1.903 sum -8.136 27.835 -10.566 30.865 Atomic orbital electron populations 1.20455 0.87936 1.03403 1.03175 1.20050 0.93114 0.85483 1.04891 1.41629 1.04026 1.07889 1.66371 0.75257 1.18202 0.84430 0.94258 1.04342 1.19959 0.89816 0.98697 1.07212 1.20790 0.96571 0.94497 1.00020 1.20682 0.98264 0.93884 1.03993 1.20459 0.90430 1.00037 0.97414 1.19009 0.93161 0.91574 1.05976 1.19994 0.90519 0.93946 1.11401 1.19566 0.99030 0.88801 0.95618 1.21624 1.02212 0.93782 0.96809 1.22199 0.97221 0.94786 0.93570 1.61917 1.59704 1.02749 1.02028 1.22232 0.98288 0.86801 0.99497 1.18997 0.82271 1.00151 0.98795 0.87709 1.28674 0.94657 0.90893 0.92094 1.80988 1.12907 1.10986 1.09974 1.19643 0.97732 0.88658 0.98402 1.21033 1.29387 0.95591 1.10390 0.90779 1.24995 0.95452 0.97759 0.94946 1.69909 1.43370 1.12886 1.27392 0.86818 0.81501 0.80360 0.80861 1.20255 1.21314 1.18753 1.22064 0.96902 0.94934 0.93138 1.21605 1.02200 0.93678 0.96813 0.90543 0.91629 0.89650 0.86664 0.86009 0.86065 0.85590 0.91058 0.90860 0.91739 0.94765 0.89849 0.92995 0.90288 0.94598 0.96126 0.92601 0.95000 0.90852 0.91968 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 9.92 36.00 0.36 -0.15 16 2 C 0.07 0.62 7.08 -81.77 -0.58 0.04 16 3 N -0.60 -4.94 6.07 -6.95 -0.04 -4.98 16 4 H 0.41 2.18 8.96 -40.82 -0.37 1.81 16 5 C 0.09 0.99 7.28 -83.99 -0.61 0.38 16 6 C -0.14 -1.28 10.08 -39.43 -0.40 -1.68 16 7 C -0.10 -0.95 10.01 -39.54 -0.40 -1.34 16 8 C -0.15 -1.60 9.97 -39.94 -0.40 -2.00 16 9 C -0.06 -0.77 9.07 -39.64 -0.36 -1.13 16 10 C -0.09 -1.09 6.03 -105.14 -0.63 -1.72 16 11 C -0.15 -1.58 4.94 -102.71 -0.51 -2.09 16 12 C -0.01 -0.11 2.57 -91.64 -0.24 -0.34 16 13 C -0.11 -1.18 5.31 -26.65 -0.14 -1.32 16 14 C 0.05 0.59 5.29 -3.83 -0.02 0.57 16 15 N -0.54 -6.94 4.36 -234.67 -1.02 -7.96 16 16 C 0.06 0.85 4.32 -3.82 -0.02 0.83 16 17 C 0.02 0.35 2.13 -93.41 -0.20 0.15 16 18 H 0.11 1.80 6.22 -51.93 -0.32 1.48 16 19 C 0.25 5.31 13.67 -20.76 -0.28 5.02 16 20 N -0.47 -10.82 18.54 42.15 0.78 -10.04 16 21 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 22 C -0.53 -14.22 9.15 -34.44 -0.32 -14.53 16 23 H 0.07 2.20 7.84 -52.48 -0.41 1.79 16 24 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 25 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 26 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 30 C 0.06 0.62 5.46 -3.83 -0.02 0.60 16 31 C -0.11 -1.08 5.32 -26.65 -0.14 -1.23 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.45 7.27 -51.93 -0.38 0.07 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.13 1.55 6.50 -52.49 -0.34 1.21 16 39 H 0.07 0.62 6.82 -51.93 -0.35 0.27 16 40 H 0.07 0.94 6.69 -51.93 -0.35 0.59 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 1.07 6.12 -51.93 -0.32 0.75 16 44 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 45 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 46 H 0.04 0.73 7.20 -51.93 -0.37 0.35 16 47 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.07 0.87 6.78 -51.93 -0.35 0.52 16 LS Contribution 411.15 15.07 6.20 6.20 Total: -1.00 -33.11 411.15 -11.26 -44.37 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.18 Total: 1.06 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -5.10 Total: -18.26 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.49 Total: -49.39 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.11 -11.26 -44.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051473326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.767 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds