Wall clock time and date at job start Tue Mar 31 2020 06:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39675 * 120.11564 * 294.47074 * 3 2 1 5 5 C 1.37966 * 119.98308 * 179.74931 * 4 3 2 6 6 C 1.38259 * 120.23051 * 0.55650 * 5 4 3 7 7 C 1.38948 * 120.23597 * 359.69259 * 6 5 4 8 8 N 1.39965 * 119.99853 * 180.02562 * 7 6 5 9 9 C 1.34772 * 120.00067 * 213.15709 * 8 7 6 10 10 O 1.21589 * 120.00167 * 5.19144 * 9 8 7 11 11 N 1.34778 * 119.99783 * 185.18414 * 9 8 7 12 12 C 1.39935 * 119.99839 * 185.17292 * 11 9 8 13 13 C 1.38922 * 120.04052 * 212.82140 * 12 11 9 14 14 C 1.38126 * 120.03947 * 179.77292 * 13 12 11 15 15 C 1.38215 * 120.12340 * 0.50620 * 14 13 12 16 16 C 1.38762 * 120.08130 * 359.74664 * 15 14 13 17 17 O 1.35898 * 120.02040 * 179.97438 * 16 15 14 18 18 C 1.42898 * 116.99813 * 0.02971 * 17 16 15 19 19 C 1.53003 * 109.47279 * 179.97438 * 18 17 16 20 20 C 1.50693 * 109.47661 * 180.02562 * 19 18 17 21 21 H 1.08008 * 119.99907 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00673 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99437 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00558 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46605 * 60.00046 * 24 22 20 26 26 H 1.48496 * 109.47176 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47077 * 300.00384 * 24 22 20 28 28 C 1.38625 * 119.96149 * 0.02562 * 16 15 14 29 29 C 1.38622 * 120.00544 * 0.03052 * 7 6 5 30 30 H 1.07996 * 120.00985 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.88671 * 180.27148 * 5 4 3 32 32 H 1.07998 * 119.88424 * 179.72687 * 6 5 4 33 33 H 0.96997 * 119.99815 * 33.16110 * 8 7 6 34 34 H 0.96998 * 120.00025 * 5.18657 * 11 9 8 35 35 H 1.08002 * 119.98465 * 0.02562 * 13 12 11 36 36 H 1.08005 * 119.94122 * 180.25359 * 14 13 12 37 37 H 1.08003 * 119.96037 * 179.77002 * 15 14 13 38 38 H 1.09003 * 109.47201 * 299.99243 * 18 17 16 39 39 H 1.08997 * 109.47524 * 59.99759 * 18 17 16 40 40 H 1.09008 * 109.46967 * 300.00038 * 19 18 17 41 41 H 1.09002 * 109.47291 * 59.99364 * 19 18 17 42 42 H 0.97002 * 120.00003 * 179.97438 * 23 22 20 43 43 H 1.08001 * 120.06052 * 180.02562 * 28 16 15 44 44 H 1.08006 * 120.10932 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.4995 1.0997 5 6 4.6487 -0.5023 1.0946 6 6 5.3419 -0.0008 0.0086 7 6 4.6540 0.5038 -1.0882 8 7 5.3607 1.0099 -2.1852 9 6 4.8570 2.0391 -2.8947 10 8 3.8370 2.5894 -2.5271 11 7 5.4840 2.4584 -4.0116 12 6 5.0237 3.5935 -4.6882 13 6 5.1370 3.6730 -6.0705 14 6 4.6783 4.7914 -6.7387 15 6 4.1153 5.8385 -6.0336 16 6 4.0044 5.7667 -4.6523 17 8 3.4511 6.7971 -3.9602 18 6 3.0044 7.9225 -4.7191 19 6 2.4149 8.9726 -3.7753 20 6 1.9433 10.1592 -4.5755 21 1 2.0533 10.1641 -5.6500 22 6 1.3713 11.2386 -3.9363 23 7 1.2368 11.2324 -2.6280 24 14 0.7872 12.7098 -4.9282 25 1 -0.2519 12.2736 -5.8953 26 1 0.2139 13.7283 -4.0123 27 1 1.9348 13.2965 -5.6659 28 6 4.4593 4.6438 -3.9786 29 6 3.2678 0.5062 -1.0959 30 1 2.7313 -0.8880 1.9518 31 1 5.1892 -0.8935 1.9439 32 1 6.4219 -0.0017 0.0124 33 1 6.2129 0.6198 -2.4349 34 1 6.2543 1.9732 -4.3466 35 1 5.5803 2.8580 -6.6234 36 1 4.7635 4.8498 -7.8138 37 1 3.7609 6.7133 -6.5584 38 1 3.8466 8.3527 -5.2611 39 1 2.2410 7.6027 -5.4283 40 1 1.5726 8.5423 -3.2335 41 1 3.1780 9.2926 -3.0656 42 1 0.8347 11.9919 -2.1782 43 1 4.3734 4.5861 -2.9035 44 1 2.7314 0.8976 -1.9477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055329129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:12 Heat of formation + Delta-G solvation = 21.816177 kcal Electronic energy + Delta-G solvation = -28243.746879 eV Core-core repulsion = 24126.865893 eV Total energy + Delta-G solvation = -4116.880986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41049 -39.98740 -39.17300 -37.42027 -36.69650 -35.16677 -34.76526 -33.33349 -31.73784 -30.90194 -30.50951 -29.33889 -28.75088 -25.07388 -24.46931 -24.04048 -22.78187 -22.10102 -21.31901 -20.43548 -19.68551 -18.96202 -18.18592 -16.78208 -16.66002 -16.27765 -16.16280 -15.81411 -15.72857 -15.29142 -15.26786 -14.98701 -14.73003 -14.41256 -14.24949 -14.18132 -13.50115 -13.43769 -13.13978 -13.06332 -12.86530 -12.70990 -12.29810 -12.22125 -11.98243 -11.81999 -11.71847 -11.43402 -10.95875 -10.89601 -10.85734 -10.59276 -10.49785 -10.15395 -9.81968 -9.63139 -9.39039 -9.28388 -8.70087 -8.42619 -8.26801 -7.84388 -6.07169 -4.12068 0.35152 0.83453 1.34847 1.61413 1.99441 2.44861 2.49869 2.82623 3.30627 3.34769 3.36440 3.43330 3.52864 3.63045 3.93310 3.95765 4.40983 4.43701 4.56878 4.64008 4.91058 4.95009 4.98315 5.14448 5.28938 5.30294 5.34192 5.39321 5.56436 5.67835 5.77353 5.79508 5.86071 5.91921 6.02471 6.06287 6.14064 6.29833 6.41468 6.48327 6.56133 6.60367 6.75094 6.94385 7.23806 7.37432 7.53659 7.67846 7.83536 8.01678 8.08859 8.26640 8.93355 9.51965 11.04393 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.010141 B = 0.002058 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.366345 B =13600.119758 C =15493.823460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.253 3.747 3 C -0.005 4.005 4 C -0.089 4.089 5 C -0.098 4.098 6 C -0.118 4.118 7 C 0.168 3.832 8 N -0.683 5.683 9 C 0.700 3.300 10 O -0.541 6.541 11 N -0.676 5.676 12 C 0.191 3.809 13 C -0.195 4.195 14 C -0.060 4.060 15 C -0.225 4.225 16 C 0.166 3.834 17 O -0.312 6.312 18 C 0.065 3.935 19 C 0.025 3.975 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 C -0.163 4.163 29 C -0.074 4.074 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.411 0.589 34 H 0.408 0.592 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.264 0.736 43 H 0.142 0.858 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.053 -28.701 0.816 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.062 4.062 3 C -0.009 4.009 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.140 4.140 7 C 0.073 3.927 8 N -0.332 5.332 9 C 0.401 3.599 10 O -0.414 6.414 11 N -0.323 5.323 12 C 0.097 3.903 13 C -0.216 4.216 14 C -0.079 4.079 15 C -0.245 4.245 16 C 0.118 3.882 17 O -0.224 6.224 18 C -0.009 4.009 19 C -0.012 4.012 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.184 4.184 29 C -0.097 4.097 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.247 0.753 34 H 0.244 0.756 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.160 0.840 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.261 -28.033 1.492 31.047 hybrid contribution 0.942 0.553 -1.057 1.520 sum 14.203 -27.480 0.435 30.936 Atomic orbital electron populations 1.81275 1.12013 1.08070 1.07150 1.25614 0.92600 0.93966 0.94049 1.15790 0.84492 1.04099 0.96530 1.21167 0.94421 0.98451 0.96964 1.20861 0.93407 0.99333 0.98107 1.21096 1.00472 1.00690 0.91725 1.17203 0.90529 0.97629 0.87362 1.42547 1.25002 1.35273 1.30333 1.15914 0.83556 0.80080 0.80395 1.91076 1.23901 1.57193 1.69279 1.42444 1.34063 1.29518 1.26311 1.16993 0.98063 0.84962 0.90257 1.20555 1.09015 1.00552 0.91506 1.20653 0.95625 0.92214 0.99392 1.21407 1.07695 1.01838 0.93514 1.18950 0.90886 0.88186 0.90219 1.86200 1.72598 1.26248 1.37378 1.23359 0.97360 0.84000 0.96193 1.19127 0.96642 0.90786 0.94676 1.20926 1.40838 1.01260 0.93474 0.92403 1.24995 0.95649 0.98603 0.94966 1.69971 1.43773 1.31200 1.07776 0.86543 0.79082 0.81943 0.79773 1.20095 1.21129 1.20098 1.20291 1.05546 0.91180 1.01339 1.21242 0.92806 0.96948 0.98674 0.84780 0.84373 0.84803 0.75328 0.75610 0.86062 0.85609 0.84991 0.93015 0.93021 0.95342 0.95389 0.92644 0.84044 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.78 18.54 41.84 0.78 -5.00 16 2 C 0.25 2.91 15.33 -22.47 -0.34 2.57 16 3 C -0.01 -0.05 5.73 -106.96 -0.61 -0.66 16 4 C -0.09 -0.53 9.75 -39.14 -0.38 -0.91 16 5 C -0.10 -0.42 10.02 -39.67 -0.40 -0.82 16 6 C -0.12 -0.55 9.95 -39.31 -0.39 -0.95 16 7 C 0.17 1.22 6.28 -83.74 -0.53 0.70 16 8 N -0.68 -4.24 5.35 -14.26 -0.08 -4.31 16 9 C 0.70 7.22 8.04 -86.92 -0.70 6.52 16 10 O -0.54 -8.26 11.67 5.29 0.06 -8.20 16 11 N -0.68 -5.85 5.35 -14.24 -0.08 -5.92 16 12 C 0.19 2.39 6.28 -83.72 -0.53 1.87 16 13 C -0.20 -2.14 9.96 -39.37 -0.39 -2.53 16 14 C -0.06 -0.73 10.03 -39.63 -0.40 -1.13 16 15 C -0.23 -3.47 9.04 -39.40 -0.36 -3.83 16 16 C 0.17 3.00 6.68 -39.24 -0.26 2.74 16 17 O -0.31 -6.74 10.13 -19.42 -0.20 -6.93 16 18 C 0.06 1.43 4.68 37.16 0.17 1.60 16 19 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 20 C -0.53 -14.92 9.11 -34.45 -0.31 -15.23 16 21 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 24 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 C -0.16 -2.68 8.59 -39.25 -0.34 -3.01 16 29 C -0.07 -0.71 8.36 -38.97 -0.33 -1.03 16 30 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.14 0.23 8.06 -52.48 -0.42 -0.19 16 32 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16 33 H 0.41 0.83 8.84 -40.82 -0.36 0.47 16 34 H 0.41 1.71 8.84 -40.82 -0.36 1.35 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.13 1.99 6.29 -52.48 -0.33 1.66 16 38 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 39 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 40 H 0.03 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.14 2.56 6.39 -52.49 -0.34 2.22 16 44 H 0.15 1.75 6.39 -52.48 -0.34 1.41 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -36.75 388.52 -9.30 -46.05 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.02 Total: 0.11 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -6.34 Total: -11.94 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 1.36 Total: -41.48 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.14 Total: -15.13 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.75 -9.30 -46.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055329129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.863 kcal (2) G-P(sol) polarization free energy of solvation -36.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds