Wall clock time and date at job start Tue Mar 31 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38276 * 119.90922 * 2 1 4 4 C 1.38197 * 120.16432 * 179.69801 * 3 2 1 5 5 C 1.38715 * 119.98310 * 0.56299 * 4 3 2 6 6 N 1.40120 * 120.08986 * 179.71926 * 5 4 3 7 7 C 1.34778 * 120.00084 * 335.19023 * 6 5 4 8 8 O 1.21290 * 120.00020 * 354.46958 * 7 6 5 9 9 C 1.50707 * 120.00011 * 174.46585 * 7 6 5 10 10 S 1.80994 * 109.46729 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99988 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99816 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00366 * 179.97438 * 11 10 9 14 14 N 1.31627 * 119.99591 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00194 * 179.72301 * 13 11 10 16 16 H 1.48489 * 109.47150 * 180.27676 * 15 13 11 17 17 H 1.48501 * 109.47150 * 300.27853 * 15 13 11 18 18 H 1.48499 * 109.46574 * 60.27939 * 15 13 11 19 19 C 1.39303 * 119.82322 * 359.43850 * 5 4 3 20 20 O 1.35967 * 120.08473 * 180.25511 * 19 5 4 21 21 C 1.42900 * 117.00020 * 180.02562 * 20 19 5 22 22 C 1.53010 * 109.46953 * 179.97438 * 21 20 19 23 23 H 1.08998 * 110.33417 * 307.25428 * 22 21 20 24 24 C 1.54479 * 110.37006 * 185.00163 * 22 21 20 25 25 C 1.54509 * 104.06304 * 217.19223 * 24 22 21 26 26 C 1.54488 * 104.06225 * 0.02562 * 25 24 22 27 27 O 1.44425 * 110.36725 * 69.62341 * 22 21 20 28 28 C 1.38244 * 119.91084 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47181 * 270.01778 * 1 2 3 30 30 H 1.08995 * 109.47366 * 30.01977 * 1 2 3 31 31 H 1.09000 * 109.46599 * 150.01927 * 1 2 3 32 32 H 1.08008 * 119.91681 * 359.95970 * 3 2 1 33 33 H 1.08003 * 120.00452 * 180.27907 * 4 3 2 34 34 H 0.97008 * 120.00123 * 155.19382 * 6 5 4 35 35 H 1.08999 * 109.46750 * 60.00529 * 9 7 6 36 36 H 1.08994 * 109.47090 * 300.00435 * 9 7 6 37 37 H 0.97000 * 120.00782 * 359.72213 * 14 13 11 38 38 H 1.08994 * 109.47099 * 299.99844 * 21 20 19 39 39 H 1.09001 * 109.47016 * 60.00301 * 21 20 19 40 40 H 1.08998 * 110.51358 * 335.83803 * 24 22 21 41 41 H 1.08998 * 110.51000 * 98.41075 * 24 22 21 42 42 H 1.08999 * 110.51387 * 118.64452 * 25 24 22 43 43 H 1.08994 * 110.51065 * 241.22232 * 25 24 22 44 44 H 1.08995 * 110.37352 * 142.80778 * 26 25 24 45 45 H 1.09000 * 110.36967 * 265.14732 * 26 25 24 46 46 H 1.07999 * 119.99453 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1965 1.1986 0.0000 4 6 3.5785 1.2048 0.0063 5 6 4.2771 0.0064 0.0008 6 7 5.6783 0.0101 0.0013 7 6 6.3496 1.0736 -0.4833 8 8 5.7451 1.9833 -1.0108 9 6 7.8512 1.1326 -0.3696 10 16 8.4520 2.6722 -1.1075 11 6 10.1838 2.4823 -0.8440 12 1 10.5613 1.5987 -0.3510 13 6 11.0629 3.4684 -1.2700 14 7 10.6027 4.5456 -1.8704 15 14 12.8982 3.2706 -0.9837 16 1 13.6136 4.4553 -1.5219 17 1 13.1621 3.1525 0.4729 18 1 13.3778 2.0468 -1.6746 19 6 3.5819 -1.2008 0.0008 20 8 4.2613 -2.3785 0.0007 21 6 3.4826 -3.5767 0.0002 22 6 4.4143 -4.7905 -0.0005 23 1 5.1356 -4.7138 -0.8140 24 6 3.5973 -6.0954 -0.1274 25 6 4.3461 -7.0969 0.7802 26 6 5.5266 -6.2783 1.3485 27 8 5.0944 -4.9028 1.2686 28 6 2.1964 -1.1983 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3632 -0.8902 -0.5135 32 1 1.6537 2.1323 -0.0007 33 1 4.1144 2.1424 0.0108 34 1 6.1652 -0.7529 0.3503 35 1 8.2888 0.2835 -0.8946 36 1 8.1376 1.0968 0.6814 37 1 9.6496 4.6485 -2.0187 38 1 2.8536 -3.6016 0.8899 39 1 2.8541 -3.6011 -0.8900 40 1 2.5785 -5.9444 0.2296 41 1 3.5914 -6.4434 -1.1603 42 1 3.6975 -7.4410 1.5858 43 1 4.7103 -7.9424 0.1968 44 1 5.7174 -6.5569 2.3849 45 1 6.4201 -6.4305 0.7431 46 1 1.6549 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056303497.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:29 Heat of formation + Delta-G solvation = -101.651245 kcal Electronic energy + Delta-G solvation = -27800.875104 eV Core-core repulsion = 23781.791369 eV Total energy + Delta-G solvation = -4019.083735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84981 -39.92465 -39.02461 -37.50452 -34.86451 -32.67198 -32.52973 -31.90845 -31.35906 -29.84557 -29.34295 -26.71324 -25.71202 -24.79880 -23.18725 -22.17844 -21.83683 -21.34858 -20.20356 -18.48261 -18.09555 -17.55354 -16.89984 -16.75991 -16.31257 -16.25672 -15.53152 -15.13887 -14.92538 -14.75002 -14.30678 -14.19094 -14.07387 -13.83261 -13.77492 -13.65715 -13.39880 -12.76446 -12.62423 -12.40226 -12.31896 -12.22310 -12.05674 -11.93953 -11.86692 -11.76096 -11.53103 -11.44716 -11.12526 -11.03346 -10.91219 -10.22954 -10.19631 -10.16690 -9.59389 -9.44158 -9.01256 -8.59169 -8.24009 -7.67705 -6.67947 -6.62108 -4.00337 1.23166 1.37487 2.76298 2.87868 2.90019 3.35440 3.37699 3.38800 3.52551 3.59349 3.77032 4.04037 4.24289 4.24971 4.38378 4.54755 4.61830 4.69742 4.75891 4.82395 4.88145 4.94428 4.97707 5.02419 5.19104 5.22082 5.22630 5.28831 5.34703 5.36456 5.42206 5.43558 5.50450 5.52733 5.58795 5.71291 5.74306 5.87304 6.00258 6.08080 6.22403 6.37230 6.50931 6.60086 6.82460 7.28228 7.55170 7.92467 8.38244 8.50068 9.26837 10.81777 Molecular weight = 351.13amu Principal moments of inertia in cm(-1) A = 0.009178 B = 0.002513 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.919424 B =11139.712055 C =13976.464462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.076 4.076 3 C -0.132 4.132 4 C -0.094 4.094 5 C 0.131 3.869 6 N -0.667 5.667 7 C 0.531 3.469 8 O -0.500 6.500 9 C -0.131 4.131 10 S -0.112 6.112 11 C -0.608 4.608 12 H 0.066 0.934 13 C 0.035 3.965 14 N -0.883 5.883 15 Si 1.084 2.916 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.098 3.902 20 O -0.310 6.310 21 C 0.070 3.930 22 C 0.075 3.925 23 H 0.082 0.918 24 C -0.148 4.148 25 C -0.155 4.155 26 C 0.042 3.958 27 O -0.362 6.362 28 C -0.190 4.190 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.156 0.844 34 H 0.414 0.586 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.278 0.722 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.836 -23.407 6.042 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.077 4.077 3 C -0.151 4.151 4 C -0.114 4.114 5 C 0.035 3.965 6 N -0.312 5.312 7 C 0.318 3.682 8 O -0.374 6.374 9 C -0.282 4.282 10 S 0.114 5.886 11 C -0.756 4.756 12 H 0.085 0.915 13 C -0.175 4.175 14 N -0.518 5.518 15 Si 0.910 3.090 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.051 3.949 20 O -0.224 6.224 21 C -0.005 4.005 22 C 0.018 3.982 23 H 0.100 0.900 24 C -0.185 4.185 25 C -0.192 4.192 26 C -0.035 4.035 27 O -0.281 6.281 28 C -0.209 4.209 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.173 0.827 34 H 0.250 0.750 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.063 -20.992 5.088 28.809 hybrid contribution -0.634 -2.713 0.932 2.938 sum -19.697 -23.705 6.020 31.403 Atomic orbital electron populations 1.20744 0.91141 1.02629 1.02153 1.19635 0.95901 0.92445 0.99725 1.20877 0.93523 0.97555 1.03114 1.21390 0.94070 0.97712 0.98269 1.17166 0.83047 0.91215 1.05069 1.43478 1.04054 1.21306 1.62409 1.20468 0.89767 0.81239 0.76694 1.90654 1.69299 1.36743 1.40669 1.23322 0.92622 1.06391 1.05849 1.84791 1.06698 1.20003 1.77108 1.23701 0.90769 1.11829 1.49264 0.91534 1.26060 1.06544 0.91792 0.93111 1.70800 1.17368 1.26645 1.36953 0.83326 0.72922 0.76264 0.76472 1.20276 1.21107 1.21133 1.18592 0.90563 0.84381 1.01372 1.86036 1.35257 1.11815 1.89246 1.22819 0.93513 0.82096 1.02121 1.23022 0.93971 0.93004 0.88249 0.89997 1.22903 1.00228 0.94128 1.01283 1.22938 0.97875 0.98709 0.99718 1.23439 0.96401 0.81495 1.02186 1.89241 1.75037 1.27406 1.36418 1.20799 0.91802 0.98794 1.09551 0.91274 0.91400 0.91885 0.85592 0.82698 0.74988 0.88618 0.88477 0.90999 0.91128 0.90621 0.90263 0.89822 0.90453 0.90227 0.88838 0.91964 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.08 -0.85 5.88 -104.60 -0.62 -1.46 16 3 C -0.13 -1.69 9.69 -39.58 -0.38 -2.07 16 4 C -0.09 -1.47 8.72 -39.42 -0.34 -1.82 16 5 C 0.13 2.03 6.45 -83.50 -0.54 1.50 16 6 N -0.67 -10.63 5.29 -9.75 -0.05 -10.68 16 7 C 0.53 10.30 7.66 -10.98 -0.08 10.22 16 8 O -0.50 -11.18 13.03 5.55 0.07 -11.10 16 9 C -0.13 -2.70 6.16 36.01 0.22 -2.48 16 10 S -0.11 -3.03 19.60 -107.50 -2.11 -5.14 16 11 C -0.61 -17.62 9.50 30.94 0.29 -17.32 16 12 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 13 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 14 N -0.88 -27.60 13.67 55.49 0.76 -26.84 16 15 Si 1.08 25.09 29.92 -169.99 -5.09 20.00 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.10 1.31 6.70 -39.07 -0.26 1.05 16 20 O -0.31 -3.85 9.55 -19.68 -0.19 -4.04 16 21 C 0.07 0.61 4.35 37.16 0.16 0.77 16 22 C 0.08 0.62 3.57 -25.95 -0.09 0.52 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.15 -0.77 6.63 -25.16 -0.17 -0.94 16 25 C -0.15 -0.76 7.09 -25.16 -0.18 -0.94 16 26 C 0.04 0.29 7.63 37.94 0.29 0.57 16 27 O -0.36 -3.74 11.34 -35.27 -0.40 -4.14 16 28 C -0.19 -2.14 8.69 -39.46 -0.34 -2.48 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.16 2.73 5.79 -52.48 -0.30 2.43 16 34 H 0.41 5.71 8.34 -40.82 -0.34 5.37 16 35 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 36 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 37 H 0.28 8.84 7.13 -40.82 -0.29 8.55 16 38 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 39 H 0.08 0.52 7.66 -51.93 -0.40 0.12 16 40 H 0.08 0.35 7.87 -51.93 -0.41 -0.06 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -35.79 393.98 -9.58 -45.37 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.74 Total: 5.07 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -1.78 Total: -14.44 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.71 Total: -37.52 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.52 Total: -19.28 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.11 Total: -5.14 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.79 -9.58 -45.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056303497.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.283 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds