Wall clock time and date at job start Tue Mar 31 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39752 * 125.83953 * 2 1 4 4 C 1.36114 * 107.82675 * 180.14313 * 3 2 1 5 5 N 1.39476 * 126.21730 * 179.90448 * 4 3 2 6 6 C 1.34776 * 119.99570 * 359.69436 * 5 4 3 7 7 O 1.21287 * 120.00198 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99647 * 179.97438 * 6 5 4 9 9 O 1.42901 * 109.46992 * 179.97438 * 8 6 5 10 10 C 1.36005 * 116.99661 * 179.97438 * 9 8 6 11 11 C 1.38631 * 120.03999 * 359.72831 * 10 9 8 12 12 C 1.38192 * 119.99490 * 179.72206 * 11 10 9 13 13 C 1.38453 * 120.06433 * 0.54773 * 12 11 10 14 14 F 1.35106 * 119.96082 * 179.74433 * 13 12 11 15 15 C 1.38438 * 120.07599 * 359.72823 * 13 12 11 16 16 C 1.38329 * 120.01008 * 359.97438 * 15 13 12 17 17 F 1.35096 * 120.03728 * 179.97438 * 16 15 13 18 18 N 1.35261 * 107.56468 * 359.64614 * 4 3 2 19 19 C 1.46506 * 126.04429 * 180.22288 * 18 4 3 20 20 C 1.50705 * 109.46957 * 90.00050 * 19 18 4 21 21 H 1.08004 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99996 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00132 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46868 * 60.00242 * 24 22 20 26 26 H 1.48492 * 109.47503 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47379 * 300.00741 * 24 22 20 28 28 N 1.30848 * 125.83239 * 179.74936 * 2 1 3 29 29 H 1.09006 * 109.46723 * 270.23404 * 1 2 3 30 30 H 1.08995 * 109.46623 * 30.22521 * 1 2 3 31 31 H 1.08991 * 109.47269 * 150.23416 * 1 2 3 32 32 H 1.07994 * 126.08794 * 0.04229 * 3 2 1 33 33 H 0.96995 * 120.00163 * 179.68733 * 5 4 3 34 34 H 1.08996 * 109.46943 * 59.99840 * 8 6 5 35 35 H 1.08999 * 109.47285 * 299.99980 * 8 6 5 36 36 H 1.08004 * 120.00072 * 359.97168 * 11 10 9 37 37 H 1.07996 * 119.96516 * 180.25635 * 12 11 10 38 38 H 1.08007 * 119.99488 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.47174 * 209.99813 * 19 18 4 40 40 H 1.08997 * 109.46950 * 330.00400 * 19 18 4 41 41 H 0.96997 * 120.00267 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 -0.0032 5 7 4.7514 1.5273 -0.0062 6 6 4.6158 2.8682 -0.0123 7 8 3.5098 3.3659 -0.0156 8 6 5.8386 3.7491 -0.0149 9 8 5.4374 5.1207 -0.0219 10 6 6.4273 6.0534 -0.0246 11 6 7.7554 5.6559 -0.0148 12 6 8.7604 6.6044 -0.0233 13 6 8.4424 7.9519 -0.0301 14 9 9.4267 8.8774 -0.0332 15 6 7.1171 8.3520 -0.0342 16 6 6.1086 7.4052 -0.0319 17 9 4.8151 7.7951 -0.0353 18 7 3.6092 -0.6405 0.0028 19 6 4.7870 -1.5118 0.0066 20 6 5.1909 -1.8042 1.4288 21 1 4.6269 -1.3829 2.2478 22 6 6.2804 -2.6097 1.6843 23 7 6.9674 -3.1224 0.6869 24 14 6.7815 -2.9716 3.4470 25 1 5.6623 -3.6481 4.1507 26 1 7.9744 -3.8558 3.4510 27 1 7.1053 -1.6992 4.1408 28 7 2.2730 -1.0608 0.0046 29 1 -0.3633 0.0042 1.0277 30 1 -0.3632 0.8879 -0.5173 31 1 -0.3633 -0.8920 -0.5101 32 1 1.9903 2.1596 0.0006 33 1 5.6359 1.1293 -0.0038 34 1 6.4346 3.5407 -0.9033 35 1 6.4328 3.5486 0.8766 36 1 8.0045 4.6051 -0.0046 37 1 9.7948 6.2942 -0.0198 38 1 6.8706 9.4035 -0.0399 39 1 4.5498 -2.4456 -0.5030 40 1 5.6083 -1.0146 -0.5094 41 1 7.7341 -3.6887 0.8666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058190761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:49 Heat of formation + Delta-G solvation = -51.147068 kcal Electronic energy + Delta-G solvation = -29488.186137 eV Core-core repulsion = 24813.911698 eV Total energy + Delta-G solvation = -4674.274439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.31971 -49.17239 -41.08156 -40.47110 -39.14835 -37.52000 -34.87941 -33.85208 -32.15818 -31.43907 -30.69027 -29.40678 -28.88885 -27.52820 -26.09798 -23.88135 -23.10868 -22.86149 -21.60939 -19.90618 -19.54434 -18.94849 -18.17894 -17.82624 -17.05906 -16.97485 -16.74181 -16.33011 -16.13332 -16.02826 -15.57834 -15.42225 -14.99972 -14.84804 -14.78603 -14.60851 -14.17642 -13.98291 -13.71379 -13.00503 -12.83290 -12.78616 -12.66784 -12.57486 -12.54119 -12.09465 -11.84092 -11.78010 -11.63504 -11.40952 -11.15963 -10.93560 -10.52048 -10.40469 -10.03391 -9.89816 -9.60526 -9.59115 -8.78762 -8.58849 -8.00454 -7.54278 -6.40395 -4.49374 0.46107 0.56120 2.00014 2.06320 2.87291 2.94125 3.05540 3.12535 3.18156 3.22676 3.48272 3.50950 3.70846 3.88025 4.08421 4.18099 4.25431 4.41116 4.50872 4.64262 4.67149 4.90739 4.92911 5.27866 5.30077 5.40510 5.48277 5.53789 5.56753 6.00947 6.03066 6.08161 6.10490 6.18663 6.32038 6.57069 6.71034 6.75699 6.97078 7.38800 7.47926 7.53768 7.71999 7.79076 8.12386 8.53866 8.63037 9.18632 10.66609 Molecular weight = 351.12amu Principal moments of inertia in cm(-1) A = 0.009706 B = 0.002599 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.234389 B =10772.762997 C =13152.563159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.052 3.948 3 C -0.292 4.292 4 C 0.300 3.700 5 N -0.634 5.634 6 C 0.521 3.479 7 O -0.488 6.488 8 C 0.044 3.956 9 O -0.276 6.276 10 C 0.093 3.907 11 C -0.155 4.155 12 C -0.119 4.119 13 C 0.090 3.910 14 F -0.133 7.133 15 C -0.153 4.153 16 C 0.105 3.895 17 F -0.119 7.119 18 N -0.343 5.343 19 C 0.256 3.744 20 C -0.543 4.543 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.890 5.890 24 Si 0.907 3.093 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 N -0.282 5.282 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 19.072 -2.995 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.324 4.324 4 C 0.078 3.922 5 N -0.283 5.283 6 C 0.305 3.695 7 O -0.360 6.360 8 C -0.035 4.035 9 O -0.188 6.188 10 C 0.045 3.955 11 C -0.174 4.174 12 C -0.138 4.138 13 C 0.070 3.930 14 F -0.111 7.111 15 C -0.173 4.173 16 C 0.085 3.915 17 F -0.097 7.097 18 N -0.128 5.128 19 C 0.139 3.861 20 C -0.581 4.581 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.733 3.267 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.200 1.200 28 N -0.108 5.108 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.255 0.745 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.402 18.063 -3.051 18.632 hybrid contribution 1.248 0.350 0.986 1.628 sum 4.650 18.413 -2.066 19.103 Atomic orbital electron populations 1.20031 0.87476 1.02412 1.02240 1.22043 0.96593 0.90954 1.01722 1.21294 0.89051 1.00559 1.21516 1.17811 0.87627 0.83346 1.03407 1.42446 1.08693 1.04904 1.72272 1.19733 0.90517 0.81533 0.77720 1.90714 1.26129 1.73395 1.45715 1.22475 0.95974 0.80059 1.04974 1.86234 1.30459 1.13821 1.88284 1.19042 0.88325 0.88211 0.99880 1.21089 0.90116 1.01419 1.04757 1.21033 1.01163 0.90565 1.01044 1.17162 0.84458 0.86322 1.05013 1.91535 1.60432 1.65116 1.94048 1.20905 0.90497 1.00958 1.04913 1.16513 0.79444 0.88961 1.06564 1.91576 1.33199 1.91183 1.93781 1.49378 1.06624 1.02022 1.54803 1.19634 0.77754 0.89817 0.98927 1.21309 1.13376 1.32113 0.91305 0.91722 1.24932 0.95681 0.94790 0.98219 1.69901 1.19150 1.32448 1.31228 0.86407 0.78151 0.78525 0.83592 1.19828 1.20869 1.19977 1.77380 0.86045 1.21727 1.25601 0.91242 0.91070 0.91491 0.82088 0.74527 0.87895 0.87747 0.82973 0.83430 0.82636 0.92459 0.93804 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.43 16 3 C -0.29 -5.87 9.58 -39.78 -0.38 -6.25 16 4 C 0.30 6.07 7.66 -153.15 -1.17 4.90 16 5 N -0.63 -10.10 5.42 -11.46 -0.06 -10.16 16 6 C 0.52 7.63 7.87 -10.98 -0.09 7.54 16 7 O -0.49 -8.95 13.63 -14.36 -0.20 -9.14 16 8 C 0.04 0.43 5.22 36.01 0.19 0.62 16 9 O -0.28 -3.37 9.54 -39.66 -0.38 -3.75 16 10 C 0.09 0.93 6.69 -39.19 -0.26 0.67 16 11 C -0.16 -1.12 9.04 -39.45 -0.36 -1.47 16 12 C -0.12 -0.80 10.02 -39.52 -0.40 -1.20 16 13 C 0.09 0.72 7.30 -39.43 -0.29 0.43 16 14 F -0.13 -1.13 17.27 2.25 0.04 -1.09 16 15 C -0.15 -1.25 10.00 -39.47 -0.39 -1.65 16 16 C 0.11 1.08 7.31 -39.31 -0.29 0.80 16 17 F -0.12 -1.46 17.11 2.25 0.04 -1.42 16 18 N -0.34 -7.75 3.60 -61.57 -0.22 -7.98 16 19 C 0.26 6.14 6.01 -5.19 -0.03 6.10 16 20 C -0.54 -14.04 9.39 -34.44 -0.32 -14.36 16 21 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 22 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -23.47 13.29 55.43 0.74 -22.73 16 24 Si 0.91 20.00 29.54 -169.99 -5.02 14.97 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 N -0.28 -6.42 12.56 33.65 0.42 -6.00 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.16 3.18 5.83 -52.49 -0.31 2.87 16 33 H 0.42 5.78 7.96 -40.82 -0.33 5.45 16 34 H 0.10 0.67 7.68 -51.93 -0.40 0.27 16 35 H 0.10 0.74 7.65 -51.93 -0.40 0.35 16 36 H 0.15 0.72 6.30 -52.48 -0.33 0.39 16 37 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 39 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.04 0.99 7.50 -51.93 -0.39 0.61 16 41 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -32.64 370.17 -7.40 -40.04 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.23 Total: 4.05 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -4.11 Total: -2.36 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.88 Total: -46.87 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.57 Total: -12.89 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.64 -7.40 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058190761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.107 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds