Wall clock time and date at job start Tue Mar 31 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.34771 * 120.00308 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00246 * 180.02562 * 12 2 1 14 14 C 1.50706 * 120.00094 * 359.97438 * 12 2 1 15 15 N 1.46897 * 109.47280 * 179.97438 * 14 12 2 16 16 C 1.46845 * 111.00219 * 294.21015 * 15 14 12 17 17 C 1.53038 * 109.52126 * 174.16053 * 16 15 14 18 18 C 1.53120 * 109.27736 * 59.18106 * 17 16 15 19 19 C 1.50697 * 109.52275 * 182.43736 * 18 17 16 20 20 C 1.35315 * 126.12904 * 84.37041 * 19 18 17 21 21 C 1.39864 * 107.92174 * 179.90576 * 20 19 18 22 22 N 1.30832 * 108.20637 * 0.36647 * 21 20 19 23 23 N 1.34950 * 126.12823 * 264.68608 * 19 18 17 24 24 C 1.46497 * 126.03769 * 359.97438 * 23 19 18 25 25 C 1.52994 * 109.47470 * 89.99846 * 24 23 19 26 26 O 1.42906 * 109.47354 * 179.97438 * 25 24 23 27 27 C 1.53112 * 109.16246 * 302.34292 * 18 17 16 28 28 C 1.46853 * 110.99754 * 169.99979 * 15 14 12 29 29 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 30 30 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 31 31 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 32 32 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 33 33 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 34 34 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46865 * 300.00571 * 14 12 2 36 36 H 1.09004 * 109.46641 * 59.99818 * 14 12 2 37 37 H 1.08999 * 109.46412 * 294.17983 * 16 15 14 38 38 H 1.08995 * 109.45901 * 54.14885 * 16 15 14 39 39 H 1.08999 * 109.50623 * 299.23956 * 17 16 15 40 40 H 1.09001 * 109.53312 * 179.14216 * 17 16 15 41 41 H 1.09003 * 109.57300 * 62.28044 * 18 17 16 42 42 H 1.08000 * 126.03388 * 0.04184 * 20 19 18 43 43 H 1.08008 * 125.89803 * 180.13989 * 21 20 19 44 44 H 1.08998 * 109.47241 * 210.00488 * 24 23 19 45 45 H 1.09007 * 109.46920 * 330.00096 * 24 23 19 46 46 H 1.09004 * 109.47219 * 300.00112 * 25 24 23 47 47 H 1.08997 * 109.46931 * 60.00113 * 25 24 23 48 48 H 0.96704 * 113.99818 * 179.97438 * 26 25 24 49 49 H 1.08995 * 109.50380 * 297.71433 * 27 18 17 50 50 H 1.08996 * 109.53971 * 177.61442 * 27 18 17 51 51 H 1.09003 * 109.46140 * 305.86086 * 28 15 14 52 52 H 1.09003 * 109.45965 * 65.83491 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0017 15 7 2.3401 -3.5888 0.0014 16 6 3.1085 -3.6240 -1.2495 17 6 4.1884 -4.7043 -1.1560 18 6 3.5255 -6.0614 -0.9039 19 6 4.5872 -7.1199 -0.7514 20 6 5.2552 -7.4218 0.3860 21 6 6.1474 -8.4598 0.0986 22 7 6.0253 -8.7648 -1.1678 23 7 5.0464 -7.9326 -1.7260 24 6 4.6002 -7.9425 -3.1213 25 6 5.4592 -6.9755 -3.9384 26 8 5.0243 -6.9856 -5.2996 27 6 2.6927 -5.9834 0.3785 28 6 1.6561 -4.8661 0.2406 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6084 2.0285 0.5138 33 1 3.1500 1.1384 0.5139 34 1 4.0302 4.4439 -0.8505 35 1 0.7591 -2.5294 0.8919 36 1 0.7585 -2.5306 -0.8881 37 1 2.4398 -3.8498 -2.0801 38 1 3.5781 -2.6544 -1.4146 39 1 4.8656 -4.4718 -0.3341 40 1 4.7490 -4.7410 -2.0901 41 1 2.8782 -6.3132 -1.7440 42 1 5.1213 -6.9466 1.3466 43 1 6.8233 -8.9264 0.8000 44 1 4.6998 -8.9491 -3.5275 45 1 3.5564 -7.6322 -3.1712 46 1 5.3596 -5.9689 -3.5322 47 1 6.5029 -7.2857 -3.8885 48 1 5.5256 -6.3936 -5.8771 49 1 3.3463 -5.7711 1.2245 50 1 2.1840 -6.9336 0.5411 51 1 1.0707 -4.7984 1.1577 52 1 0.9943 -5.0861 -0.5972 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058345355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:31 Heat of formation + Delta-G solvation = 2.608812 kcal Electronic energy + Delta-G solvation = -31717.637369 eV Core-core repulsion = 27526.166326 eV Total energy + Delta-G solvation = -4191.471043 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 350.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.61674 -39.57844 -38.12006 -37.46568 -34.87619 -34.27581 -33.68830 -32.61006 -30.90753 -30.09826 -28.67743 -28.27508 -26.81511 -25.56537 -23.97788 -23.58041 -23.23791 -22.29556 -21.33711 -20.22033 -19.22285 -18.42344 -18.05903 -16.74724 -16.56465 -16.42222 -16.01362 -15.78499 -15.62736 -15.25831 -14.98299 -14.47602 -14.44847 -14.21282 -14.04210 -13.91149 -13.75862 -13.45113 -13.17783 -13.04820 -12.69154 -12.46794 -12.40866 -12.18594 -12.08432 -11.93398 -11.86134 -11.58888 -11.26160 -11.22755 -11.06714 -10.91700 -10.88087 -10.62120 -10.60052 -10.52987 -10.39685 -10.14915 -9.63658 -9.47261 -8.87877 -8.67650 -8.44817 -8.15791 -7.62523 -6.05427 -4.10201 1.63796 2.13424 2.68923 3.27964 3.34524 3.37320 3.45776 3.63256 3.85277 4.19062 4.20128 4.28813 4.43251 4.52596 4.62855 4.72227 4.77481 4.83380 4.96251 5.06398 5.14832 5.17400 5.27417 5.28058 5.30328 5.38475 5.38672 5.48220 5.51148 5.52839 5.58305 5.66622 5.70765 5.77382 5.80380 5.93842 5.94661 6.10540 6.15973 6.25321 6.33550 6.48596 6.79363 6.93929 7.10119 7.12273 7.19071 7.44830 7.52830 7.55066 7.91093 8.22628 8.42855 8.89723 9.12997 9.54917 11.02614 Molecular weight = 350.21amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.002493 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.994180 B =11228.364178 C =12546.733863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.606 5.606 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.505 3.495 13 O -0.523 6.523 14 C 0.038 3.962 15 N -0.518 5.518 16 C 0.052 3.948 17 C -0.100 4.100 18 C -0.029 4.029 19 C 0.101 3.899 20 C -0.267 4.267 21 C 0.049 3.951 22 N -0.302 5.302 23 N -0.371 5.371 24 C 0.135 3.865 25 C 0.060 3.940 26 O -0.570 6.570 27 C -0.101 4.101 28 C 0.056 3.944 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.025 0.975 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.149 0.851 43 H 0.183 0.817 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.390 0.610 49 H 0.082 0.918 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 -22.863 -0.506 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.339 5.339 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.291 3.709 13 O -0.400 6.400 14 C -0.093 4.093 15 N -0.243 5.243 16 C -0.076 4.076 17 C -0.138 4.138 18 C -0.049 4.049 19 C -0.025 4.025 20 C -0.296 4.296 21 C -0.137 4.137 22 N -0.122 5.122 23 N -0.154 5.154 24 C 0.012 3.988 25 C -0.019 4.019 26 O -0.376 6.376 27 C -0.139 4.139 28 C -0.072 4.072 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.167 0.833 43 H 0.200 0.800 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.238 0.762 49 H 0.101 0.899 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.374 -23.797 -0.952 23.934 hybrid contribution -0.348 1.244 -1.222 1.778 sum -2.723 -22.553 -2.174 22.820 Atomic orbital electron populations 1.21610 0.81609 1.01589 1.01019 1.48168 1.06070 1.07855 1.71818 1.19288 0.92605 0.77976 0.97408 1.21413 1.36428 1.06227 0.92317 0.92632 1.24932 0.95403 0.96429 0.97354 1.69926 1.38413 1.14323 1.30699 0.86515 0.77699 0.78573 0.84726 1.20667 1.21066 1.19964 1.20127 0.88261 0.84660 0.77875 1.90636 1.13628 1.86736 1.48951 1.22028 0.94273 0.90844 1.02184 1.61554 1.24983 1.01598 1.36168 1.22272 0.95100 1.01485 0.88723 1.21607 0.98168 0.91589 1.02463 1.19974 0.93204 0.92019 0.99692 1.21129 0.98097 0.94173 0.89137 1.21266 1.03911 1.04793 0.99586 1.23860 0.99327 0.97116 0.93398 1.77373 1.08401 1.16056 1.10353 1.48382 1.30923 1.28246 1.07887 1.21298 0.98645 1.02132 0.76686 1.22490 0.97741 0.99060 0.82636 1.86347 1.62944 1.69259 1.19036 1.21576 0.97512 0.97763 0.97061 1.22111 0.95210 0.89123 1.00760 0.93366 0.92764 0.91360 0.95085 0.93786 0.92708 0.88524 0.92635 0.95698 0.87611 0.89908 0.91981 0.90613 0.83292 0.80030 0.88090 0.88313 0.92547 0.92643 0.76193 0.89939 0.91225 0.90307 0.95063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 10.29 59.85 0.62 1.92 16 2 N -0.61 -12.52 2.86 -182.95 -0.52 -13.04 16 3 C 0.25 6.38 5.20 -5.19 -0.03 6.35 16 4 C -0.52 -14.73 9.39 -34.44 -0.32 -15.05 16 5 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.51 10.13 7.35 -10.99 -0.08 10.05 16 13 O -0.52 -12.70 13.91 5.56 0.08 -12.62 16 14 C 0.04 0.54 4.00 -4.97 -0.02 0.52 16 15 N -0.52 -7.11 4.40 -236.11 -1.04 -8.15 16 16 C 0.05 0.73 5.11 -3.83 -0.02 0.71 16 17 C -0.10 -1.20 5.36 -26.65 -0.14 -1.35 16 18 C -0.03 -0.28 2.45 -91.65 -0.22 -0.51 16 19 C 0.10 1.08 5.86 -82.26 -0.48 0.60 16 20 C -0.27 -2.79 9.97 -40.02 -0.40 -3.19 16 21 C 0.05 0.51 12.02 -17.37 -0.21 0.30 16 22 N -0.30 -3.67 12.58 30.62 0.39 -3.28 16 23 N -0.37 -4.07 3.61 -57.15 -0.21 -4.28 16 24 C 0.13 1.22 6.61 -4.05 -0.03 1.19 16 25 C 0.06 0.52 7.37 37.15 0.27 0.80 16 26 O -0.57 -4.77 13.66 -35.23 -0.48 -5.25 16 27 C -0.10 -0.93 5.01 -26.65 -0.13 -1.06 16 28 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 31 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 32 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.10 1.15 7.25 -51.93 -0.38 0.77 16 36 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 1.93 5.78 -51.93 -0.30 1.63 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.71 6.60 -51.93 -0.34 0.37 16 41 H 0.08 0.70 6.95 -51.93 -0.36 0.34 16 42 H 0.15 1.37 7.31 -52.49 -0.38 0.99 16 43 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.10 0.79 6.98 -51.93 -0.36 0.43 16 46 H 0.06 0.51 6.60 -51.93 -0.34 0.17 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.39 1.72 9.12 45.56 0.42 2.14 16 49 H 0.08 0.82 7.17 -51.93 -0.37 0.44 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 52 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 412.74 15.07 6.22 6.22 Total: -1.00 -35.46 412.74 -8.90 -44.35 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.73 Total: 1.70 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.32 Total: 3.44 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.65 Total: -54.48 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.40 Total: -17.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.46 -8.90 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058345355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.961 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds