Wall clock time and date at job start Tue Mar 31 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50705 * 110.53842 * 2 1 4 4 C 1.38245 * 119.98536 * 171.47384 * 3 2 1 5 5 C 1.38218 * 120.00777 * 179.76874 * 4 3 2 6 6 C 1.38323 * 119.98766 * 0.50554 * 5 4 3 7 7 Br 1.89099 * 120.01099 * 179.77256 * 6 5 4 8 8 C 1.38328 * 119.98256 * 359.74457 * 6 5 4 9 9 C 1.38217 * 119.99065 * 0.02562 * 8 6 5 10 10 C 1.54224 * 110.60557 * 237.15153 * 2 1 3 11 11 C 1.51312 * 103.55669 * 241.32687 * 10 2 1 12 12 O 1.21226 * 125.40317 * 179.97438 * 11 10 2 13 13 N 1.33887 * 109.20638 * 0.02562 * 11 10 2 14 14 C 1.46491 * 122.76180 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47358 * 90.02580 * 14 13 11 16 16 H 1.08000 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00555 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00016 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00551 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47426 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.46847 * 300.00330 * 19 17 15 22 22 H 1.48498 * 109.46981 * 59.99839 * 19 17 15 23 23 C 1.33876 * 114.47043 * 0.26783 * 13 11 10 24 24 O 1.21226 * 125.39132 * 179.71226 * 23 13 11 25 25 H 1.08996 * 109.47253 * 182.84616 * 1 2 3 26 26 H 1.08996 * 109.46854 * 302.84930 * 1 2 3 27 27 H 1.09000 * 109.46787 * 62.84685 * 1 2 3 28 28 H 1.08000 * 119.99283 * 0.02562 * 4 3 2 29 29 H 1.07998 * 120.00682 * 180.27819 * 5 4 3 30 30 H 1.07996 * 120.00562 * 180.02562 * 8 6 5 31 31 H 1.08000 * 120.00140 * 180.02562 * 9 8 6 32 32 H 1.09000 * 110.60628 * 122.81342 * 10 2 1 33 33 H 1.08996 * 110.60779 * 359.84358 * 10 2 1 34 34 H 1.08999 * 109.47510 * 330.02402 * 14 13 11 35 35 H 1.09003 * 109.46775 * 210.02538 * 14 13 11 36 36 H 0.97001 * 119.99134 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0588 1.4113 0.0000 4 6 3.4101 1.6428 0.1775 5 6 3.8962 2.9367 0.1728 6 6 3.0289 4.0004 0.0009 7 35 3.6923 5.7712 0.0008 8 6 1.6761 3.7685 -0.1715 9 6 1.1916 2.4741 -0.1714 10 6 2.0728 -0.7830 -1.2128 11 6 2.8583 -1.9126 -0.5830 12 8 3.4565 -2.7753 -1.1891 13 7 2.7870 -1.8090 0.7500 14 6 3.4443 -2.7550 1.6549 15 6 4.8366 -2.2687 1.9652 16 1 5.1959 -1.3473 1.5313 17 6 5.6516 -3.0000 2.8030 18 7 5.2142 -4.1224 3.3310 19 14 7.3771 -2.3969 3.1881 20 1 8.0435 -3.3559 4.1054 21 1 8.1576 -2.2930 1.9291 22 1 7.3020 -1.0626 3.8355 23 6 2.0604 -0.7732 1.1876 24 8 1.8616 -0.4968 2.3511 25 1 -0.3633 -1.0263 0.0510 26 1 -0.3633 0.5574 0.8633 27 1 -0.3633 0.4690 -0.9144 28 1 4.0866 0.8123 0.3158 29 1 4.9525 3.1173 0.3070 30 1 0.9987 4.5987 -0.3062 31 1 0.1355 2.2928 -0.3064 32 1 2.7254 -0.1519 -1.8161 33 1 1.2529 -1.1749 -1.8146 34 1 3.4991 -3.7344 1.1796 35 1 2.8717 -2.8312 2.5793 36 1 4.3183 -4.4357 3.1307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058377441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:05 Heat of formation + Delta-G solvation = -42.236487 kcal Electronic energy + Delta-G solvation = -22948.155282 eV Core-core repulsion = 19443.510383 eV Total energy + Delta-G solvation = -3504.644899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 351.026 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.85207 -39.37656 -38.01185 -35.71092 -35.00098 -33.07100 -31.81141 -31.36431 -29.27145 -28.43999 -26.77472 -24.80368 -23.22969 -22.74317 -22.45418 -20.58796 -19.08669 -17.55825 -17.30975 -16.25520 -15.97710 -15.78204 -15.23451 -15.00580 -14.60978 -14.12224 -13.93097 -13.79259 -13.66380 -13.58328 -13.32713 -12.80898 -12.57884 -12.42279 -12.12456 -11.80055 -11.75002 -11.43332 -11.25650 -11.12152 -10.96650 -10.73082 -10.47161 -10.18635 -9.97007 -9.71317 -9.52031 -9.20225 -8.73430 -8.51725 -8.46211 -6.54411 -4.27735 0.82530 1.12849 1.42651 1.92927 3.07334 3.22636 3.38667 3.40402 3.43144 3.58836 4.18159 4.27250 4.37154 4.43548 4.50058 4.68501 4.72326 4.90226 5.14720 5.23223 5.23637 5.34935 5.37819 5.46812 5.50336 5.66461 5.76601 5.84862 6.00744 6.05385 6.28213 6.30428 6.56176 6.59283 6.78141 7.58867 7.75014 7.85865 8.14854 8.37840 8.63364 9.41490 10.84622 Molecular weight = 351.03amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.003725 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.586223 B = 7515.897139 C = 9115.338244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.046 4.046 4 C -0.100 4.100 5 C -0.083 4.083 6 C -0.089 4.089 7 Br -0.056 7.056 8 C -0.091 4.091 9 C -0.102 4.102 10 C -0.150 4.150 11 C 0.523 3.477 12 O -0.481 6.481 13 N -0.551 5.551 14 C 0.221 3.779 15 C -0.613 4.613 16 H 0.053 0.947 17 C 0.026 3.974 18 N -0.901 5.901 19 Si 1.072 2.928 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.535 3.465 24 O -0.470 6.470 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 18.728 -10.644 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 C -0.047 4.047 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.169 4.169 7 Br 0.029 6.971 8 C -0.111 4.111 9 C -0.121 4.121 10 C -0.190 4.190 11 C 0.311 3.689 12 O -0.353 6.353 13 N -0.291 5.291 14 C 0.104 3.896 15 C -0.651 4.651 16 H 0.071 0.929 17 C -0.179 4.179 18 N -0.536 5.536 19 Si 0.899 3.101 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.212 1.212 23 C 0.321 3.679 24 O -0.341 6.341 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.813 18.654 -9.434 22.317 hybrid contribution -1.400 -0.045 -0.782 1.605 sum -9.213 18.609 -10.216 23.142 Atomic orbital electron populations 1.21823 0.90224 1.03542 1.03530 1.20430 0.98712 0.92813 0.94730 1.19374 0.93546 0.92827 0.98933 1.21193 0.95223 0.97223 0.98277 1.21095 0.99958 0.91163 0.98015 1.21807 0.95892 0.90880 1.08297 1.96704 1.87616 1.14957 1.97779 1.21060 0.93340 0.97521 0.99150 1.21086 1.00153 0.91063 0.99804 1.22725 1.02007 0.96543 0.97696 1.20521 0.80007 0.85939 0.82470 1.90734 1.41091 1.36902 1.66560 1.46828 1.45102 1.27790 1.09402 1.19715 0.93800 0.87867 0.88261 1.22016 0.98398 1.11156 1.33535 0.92872 1.25839 1.05049 0.94092 0.92910 1.70820 1.19962 1.20517 1.42284 0.83503 0.74244 0.75763 0.76632 1.20363 1.21172 1.21175 1.20185 0.77601 0.80479 0.89598 1.90720 1.56521 1.68068 1.18801 0.91317 0.90583 0.90447 0.84848 0.84640 0.84814 0.84306 0.86503 0.86223 0.94060 0.94131 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 7.09 37.16 0.26 -1.03 16 2 C -0.06 -0.83 0.91 -155.87 -0.14 -0.97 16 3 C -0.05 -0.58 4.72 -104.62 -0.49 -1.08 16 4 C -0.10 -1.42 8.87 -39.59 -0.35 -1.77 16 5 C -0.08 -1.05 9.79 -39.56 -0.39 -1.43 16 6 C -0.09 -1.02 6.22 -39.52 -0.25 -1.27 16 7 Br -0.06 -0.57 33.70 -68.01 -2.29 -2.86 16 8 C -0.09 -0.91 9.79 -39.56 -0.39 -1.30 16 9 C -0.10 -1.04 9.05 -39.59 -0.36 -1.40 16 10 C -0.15 -1.88 6.16 -26.94 -0.17 -2.04 16 11 C 0.52 9.85 8.08 -11.08 -0.09 9.76 16 12 O -0.48 -10.71 17.48 5.60 0.10 -10.62 16 13 N -0.55 -11.64 2.54 -116.63 -0.30 -11.94 16 14 C 0.22 5.72 4.62 -5.20 -0.02 5.70 16 15 C -0.61 -17.34 9.39 -34.44 -0.32 -17.66 16 16 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 17 C 0.03 0.76 5.46 -17.82 -0.10 0.66 16 18 N -0.90 -27.12 13.65 55.43 0.76 -26.36 16 19 Si 1.07 25.31 29.90 -169.99 -5.08 20.22 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.54 10.18 5.96 -11.09 -0.07 10.11 16 24 O -0.47 -10.54 17.47 5.60 0.10 -10.45 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.75 7.80 -51.93 -0.40 0.34 16 27 H 0.08 0.50 7.39 -51.93 -0.38 0.11 16 28 H 0.13 2.16 7.76 -52.49 -0.41 1.75 16 29 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.14 1.02 6.05 -52.49 -0.32 0.71 16 32 H 0.12 1.30 7.58 -51.93 -0.39 0.91 16 33 H 0.12 1.11 7.74 -51.93 -0.40 0.71 16 34 H 0.04 1.12 7.69 -51.93 -0.40 0.72 16 35 H 0.04 1.10 7.69 -51.93 -0.40 0.70 16 36 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -33.78 331.16 -8.47 -42.25 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.88 Total: -1.51 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.87 Total: -3.72 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.46 Total: -38.31 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.20 Total: -21.06 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.22 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.78 -8.47 -42.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058377441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.015 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds