Wall clock time and date at job start Tue Mar 31 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48504 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47421 * 299.99902 * 3 2 1 6 6 H 1.48501 * 109.47479 * 60.00012 * 3 2 1 7 7 C 1.37877 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99655 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46695 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46836 * 179.97438 * 10 9 7 12 12 C 1.46850 * 110.99980 * 189.99500 * 11 10 9 13 13 C 1.53034 * 109.52406 * 185.84019 * 12 11 10 14 14 C 1.53126 * 109.28015 * 300.82411 * 13 12 11 15 15 C 1.50698 * 109.52111 * 177.55646 * 14 13 12 16 16 N 1.27927 * 124.24481 * 300.03722 * 15 14 13 17 17 C 1.34664 * 117.84606 * 179.97438 * 16 15 14 18 18 C 1.40986 * 129.63224 * 180.02562 * 17 16 15 19 19 C 1.37261 * 120.29819 * 180.02562 * 18 17 16 20 20 Cl 1.73606 * 119.69863 * 179.97438 * 19 18 17 21 21 C 1.38900 * 120.60307 * 359.91408 * 19 18 17 22 22 C 1.37615 * 120.06702 * 0.06481 * 21 19 18 23 23 C 1.39326 * 120.12257 * 359.97438 * 22 21 19 24 24 S 1.70648 * 124.23414 * 120.00250 * 15 14 13 25 25 C 1.53119 * 109.15658 * 57.65530 * 14 13 12 26 26 C 1.46844 * 111.00424 * 314.21020 * 11 10 9 27 27 H 0.96994 * 120.00689 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47429 * 59.99975 * 9 7 2 29 29 H 1.09005 * 109.46753 * 299.99287 * 9 7 2 30 30 H 1.08997 * 109.47906 * 60.00013 * 10 9 7 31 31 H 1.08998 * 109.47238 * 299.99053 * 10 9 7 32 32 H 1.09003 * 109.45650 * 65.82819 * 12 11 10 33 33 H 1.08998 * 109.45763 * 305.85160 * 12 11 10 34 34 H 1.08998 * 109.50465 * 180.88283 * 13 12 11 35 35 H 1.09002 * 109.53402 * 60.78202 * 13 12 11 36 36 H 1.09004 * 109.52224 * 297.68669 * 14 13 12 37 37 H 1.08003 * 119.84617 * 359.97438 * 18 17 16 38 38 H 1.07996 * 119.97141 * 180.02562 * 21 19 18 39 39 H 1.07999 * 119.94348 * 179.97438 * 22 21 19 40 40 H 1.08994 * 109.50861 * 62.28585 * 25 14 13 41 41 H 1.09006 * 109.49998 * 182.40667 * 25 14 13 42 42 H 1.09002 * 109.46167 * 294.17593 * 26 11 10 43 43 H 1.09002 * 109.45997 * 54.14997 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5110 -4.9342 -0.0020 12 6 2.4170 -6.0651 0.2362 13 6 1.6464 -7.3785 0.0847 14 6 0.4911 -7.4056 1.0893 15 6 -0.3075 -8.6701 0.9043 16 7 -0.9016 -8.9940 -0.1815 17 6 -1.5802 -10.1569 -0.2044 18 6 -2.3141 -10.7493 -1.2523 19 6 -2.9396 -11.9564 -1.0636 20 17 -3.8398 -12.6715 -2.3644 21 6 -2.8578 -12.6118 0.1584 22 6 -2.1463 -12.0518 1.1948 23 6 -1.5057 -10.8268 1.0216 24 16 -0.5321 -9.8499 2.1167 25 6 -0.4107 -6.1914 0.8509 26 6 0.4195 -4.9123 0.9802 27 1 -0.4851 0.8399 0.0004 28 1 0.6248 -2.5563 -0.8919 29 1 0.6242 -2.5575 0.8881 30 1 2.8714 -3.6047 0.8890 31 1 2.8727 -3.6039 -0.8910 32 1 2.8248 -5.9974 1.2448 33 1 3.2315 -6.0364 -0.4875 34 1 2.3155 -8.2172 0.2770 35 1 1.2500 -7.4538 -0.9278 36 1 0.8893 -7.3713 2.1034 37 1 -2.3852 -10.2505 -2.2077 38 1 -3.3535 -13.5614 0.2956 39 1 -2.0844 -12.5629 2.1442 40 1 -0.8394 -6.2473 -0.1496 41 1 -1.2113 -6.1818 1.5906 42 1 0.8366 -4.8501 1.9853 43 1 -0.2167 -4.0464 0.7968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058407519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:53 Heat of formation + Delta-G solvation = 39.684716 kcal Electronic energy + Delta-G solvation = -24828.622125 eV Core-core repulsion = 21218.261909 eV Total energy + Delta-G solvation = -3610.360216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 350.091 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.83039 -39.04983 -37.65801 -36.52320 -34.42110 -32.70289 -31.44328 -30.78177 -30.17032 -28.86309 -26.16942 -24.41284 -23.60130 -23.12865 -22.72463 -21.39461 -19.96841 -19.35051 -18.89160 -16.97087 -16.64678 -16.27756 -16.01513 -15.26431 -15.10460 -14.64426 -14.48512 -14.47038 -14.33072 -14.01392 -13.67348 -13.37074 -13.11775 -12.99679 -12.69984 -12.53948 -12.22727 -11.86450 -11.60603 -11.58497 -11.32219 -11.14096 -11.07075 -10.97169 -10.85369 -10.62661 -10.50139 -10.40749 -10.31636 -9.90214 -9.74027 -9.30335 -9.08784 -8.93532 -8.50156 -8.35034 -7.69256 -6.01039 -4.03186 -0.00135 0.50167 0.85424 1.36331 1.62589 1.92973 3.13930 3.30622 3.38247 3.42079 3.55387 4.10688 4.36164 4.45205 4.50718 4.57395 4.66389 4.81685 4.84781 4.89833 5.20363 5.31656 5.35126 5.41031 5.47326 5.57846 5.63631 5.64213 5.73419 5.77293 5.87620 5.91556 6.01056 6.08144 6.28842 6.31594 6.38260 6.54921 6.59993 6.92860 7.32748 7.50746 7.61153 7.78511 7.85477 8.04455 8.42312 9.03725 9.60639 11.10337 Molecular weight = 350.09amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.001883 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.061207 B =14868.136650 C =15566.260360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C 0.063 3.937 11 N -0.539 5.539 12 C 0.057 3.943 13 C -0.100 4.100 14 C -0.018 4.018 15 C 0.123 3.877 16 N -0.460 5.460 17 C 0.103 3.897 18 C -0.057 4.057 19 C -0.023 4.023 20 Cl -0.058 7.058 21 C -0.102 4.102 22 C -0.054 4.054 23 C -0.190 4.190 24 S 0.102 5.898 25 C -0.102 4.102 26 C 0.053 3.947 27 H 0.260 0.740 28 H 0.025 0.975 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.028 0.972 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 -28.709 3.502 29.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.064 4.064 11 N -0.264 5.264 12 C -0.072 4.072 13 C -0.140 4.140 14 C -0.040 4.040 15 C -0.162 4.162 16 N -0.172 5.172 17 C -0.019 4.019 18 C -0.078 4.078 19 C -0.052 4.052 20 Cl -0.029 7.029 21 C -0.124 4.124 22 C -0.077 4.077 23 C -0.309 4.309 24 S 0.361 5.639 25 C -0.141 4.141 26 C -0.075 4.075 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.654 -28.411 3.523 29.005 hybrid contribution 0.231 0.621 -0.004 0.662 sum -4.423 -27.791 3.519 28.360 Atomic orbital electron populations 1.69967 1.06007 1.26514 1.50765 1.24997 0.94845 0.99217 0.95316 0.86540 0.80094 0.83809 0.77568 1.19770 1.20985 1.21067 1.21221 0.93048 0.90992 1.50689 0.92696 1.19256 0.94132 0.90530 0.97811 1.22314 0.97002 0.88029 0.99031 1.62039 1.11534 1.03577 1.49244 1.22033 0.95123 0.90625 0.99418 1.21610 0.95217 0.97227 0.99905 1.20217 0.94883 0.87975 1.00925 1.27006 0.98146 1.00392 0.90662 1.66125 1.10287 1.14906 1.25883 1.18969 0.99211 0.90653 0.93034 1.20433 0.95309 0.93412 0.98644 1.20493 0.99088 0.95078 0.90590 1.98394 1.73226 1.82975 1.48312 1.20957 0.99863 1.00639 0.90921 1.20246 0.95695 0.92351 0.99400 1.23977 1.06805 1.01936 0.98212 1.84064 1.48866 1.14334 1.16607 1.21669 0.96955 0.92027 1.03475 1.22191 0.94241 0.97906 0.93210 0.93034 0.95617 0.96141 0.96207 0.91866 0.95359 0.90656 0.91889 0.89780 0.89260 0.83533 0.83763 0.84273 0.89786 0.91698 0.95383 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.22 -27.88 -0.12 0.39 16 10 C 0.06 1.31 5.21 -3.82 -0.02 1.29 16 11 N -0.54 -9.56 4.81 -234.67 -1.13 -10.69 16 12 C 0.06 0.80 5.42 -3.83 -0.02 0.78 16 13 C -0.10 -1.24 5.34 -26.65 -0.14 -1.38 16 14 C -0.02 -0.21 2.68 -91.65 -0.25 -0.46 16 15 C 0.12 1.46 5.83 -13.91 -0.08 1.38 16 16 N -0.46 -6.11 10.52 -9.08 -0.10 -6.21 16 17 C 0.10 1.22 6.99 -84.96 -0.59 0.63 16 18 C -0.06 -0.59 9.86 -38.90 -0.38 -0.97 16 19 C -0.02 -0.20 6.29 -39.69 -0.25 -0.45 16 20 Cl -0.06 -0.46 28.93 -51.86 -1.50 -1.96 16 21 C -0.10 -0.73 9.81 -39.56 -0.39 -1.12 16 22 C -0.05 -0.42 10.06 -39.40 -0.40 -0.81 16 23 C -0.19 -1.94 6.55 -38.55 -0.25 -2.20 16 24 S 0.10 0.99 23.08 -107.50 -2.48 -1.49 16 25 C -0.10 -1.42 5.34 -26.65 -0.14 -1.56 16 26 C 0.05 0.88 4.85 -3.84 -0.02 0.86 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.54 6.21 -51.93 -0.32 0.22 16 30 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 0.94 8.11 -51.93 -0.42 0.52 16 37 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.10 1.94 5.81 -51.93 -0.30 1.64 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -30.53 376.21 -13.36 -43.89 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.08 Total: -2.86 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -3.46 Total: -17.00 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.49 Total: -42.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.48 Total: -1.49 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.53 -13.36 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058407519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.575 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds