Wall clock time and date at job start Tue Mar 31 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48496 * 109.47394 * 239.99978 * 3 2 1 5 5 H 1.48509 * 109.46739 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47465 * 119.99519 * 3 2 1 7 7 C 1.37876 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47629 * 179.97438 * 9 7 2 11 11 O 1.45204 * 109.47428 * 180.02562 * 10 9 7 12 12 C 1.34797 * 116.99824 * 179.97438 * 11 10 9 13 13 O 1.21565 * 120.00573 * 359.97438 * 12 11 10 14 14 C 1.46959 * 119.99775 * 179.97438 * 12 11 10 15 15 C 1.36781 * 126.96541 * 359.97438 * 14 12 11 16 16 N 1.34590 * 108.65149 * 180.02562 * 15 14 12 17 17 H 0.97010 * 124.73988 * 179.97438 * 16 15 14 18 18 C 1.36459 * 110.52519 * 359.77253 * 16 15 14 19 19 C 1.35601 * 108.68761 * 0.37604 * 18 16 15 20 20 C 1.48492 * 126.96506 * 179.89566 * 19 18 16 21 21 C 1.40861 * 126.19065 * 129.66527 * 20 19 18 22 22 N 1.30704 * 108.28250 * 180.02562 * 21 20 19 23 23 N 1.40023 * 108.56671 * 359.97438 * 22 21 20 24 24 C 1.40145 * 125.97423 * 179.97438 * 23 22 21 25 25 C 1.38847 * 120.06961 * 179.97438 * 24 23 22 26 26 C 1.38120 * 119.93263 * 180.02562 * 25 24 23 27 27 C 1.38285 * 120.06514 * 0.02562 * 26 25 24 28 28 C 1.38276 * 120.13935 * 0.02562 * 27 26 25 29 29 C 1.38118 * 120.06517 * 359.97438 * 28 27 26 30 30 C 1.35792 * 108.05532 * 0.26520 * 23 22 21 31 31 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46958 * 59.99380 * 9 7 2 33 33 H 1.08997 * 109.46910 * 300.00161 * 9 7 2 34 34 H 1.09004 * 109.47090 * 59.99910 * 10 9 7 35 35 H 1.09002 * 109.47007 * 300.00174 * 10 9 7 36 36 H 1.07998 * 125.67502 * 0.02562 * 15 14 12 37 37 H 1.07993 * 125.65877 * 180.26452 * 18 16 15 38 38 H 1.08001 * 125.85694 * 0.02562 * 21 20 19 39 39 H 1.08002 * 120.03479 * 0.04727 * 25 24 23 40 40 H 1.07997 * 119.96399 * 180.27561 * 26 25 24 41 41 H 1.07995 * 119.92698 * 179.97438 * 27 26 25 42 42 H 1.07997 * 119.97014 * 179.97438 * 28 27 26 43 43 H 1.08005 * 120.03451 * 179.97438 * 29 28 27 44 44 H 1.07999 * 126.25934 * 179.70398 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5195 -4.9196 -0.0001 12 6 2.2537 -6.0500 -0.0007 13 8 3.4677 -5.9864 -0.0012 14 6 1.5866 -7.3595 -0.0008 15 6 0.2394 -7.5962 0.0002 16 7 0.0362 -8.9267 0.0003 17 1 -0.8353 -9.3528 0.0013 18 6 1.2273 -9.5926 -0.0056 19 6 2.2334 -8.6835 -0.0013 20 6 3.6913 -8.9651 -0.0031 21 6 4.6454 -8.4060 -0.8757 22 7 5.8179 -8.8957 -0.5694 23 7 5.6645 -9.7815 0.5042 24 6 6.6892 -10.5099 1.1233 25 6 6.3976 -11.3570 2.1841 26 6 7.4098 -12.0732 2.7926 27 6 8.7127 -11.9467 2.3466 28 6 9.0065 -11.1031 1.2912 29 6 7.9986 -10.3843 0.6786 30 6 4.3483 -9.8162 0.8364 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8897 33 1 0.6242 -2.5567 0.8903 34 1 2.8721 -3.6043 0.8905 35 1 2.8721 -3.6043 -0.8895 36 1 -0.5328 -6.8412 0.0008 37 1 1.3486 -10.6657 -0.0109 38 1 4.4428 -7.6947 -1.6627 39 1 5.3803 -11.4561 2.5328 40 1 7.1829 -12.7356 3.6148 41 1 9.5024 -12.5075 2.8243 42 1 10.0250 -11.0062 0.9454 43 1 8.2287 -9.7252 -0.1455 44 1 3.9033 -10.4081 1.6225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064094986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:03 Heat of formation + Delta-G solvation = 63.466949 kcal Electronic energy + Delta-G solvation = -28521.623967 eV Core-core repulsion = 24406.549094 eV Total energy + Delta-G solvation = -4115.074873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65546 -40.96467 -39.19912 -39.15608 -35.74421 -33.83428 -33.27037 -32.07733 -31.37641 -30.68542 -29.86150 -29.37843 -28.01493 -25.14996 -23.81024 -23.37404 -23.13307 -21.50663 -20.95898 -20.75164 -19.80788 -19.21323 -18.57597 -17.76449 -16.79540 -16.37610 -15.92617 -15.71394 -15.44632 -15.30133 -15.20812 -14.97151 -14.43547 -14.32556 -14.06023 -13.89321 -13.84833 -13.34563 -13.09393 -13.01424 -12.88329 -12.44784 -12.35882 -12.14883 -11.97350 -11.53866 -11.12929 -10.97590 -10.81326 -10.64199 -10.63680 -10.47117 -10.02797 -9.54229 -9.50504 -9.43471 -9.37905 -9.25014 -8.77085 -8.52007 -8.39008 -7.82940 -6.06017 -4.09558 0.58704 0.97312 1.68746 1.89538 2.19550 2.27026 2.93387 3.03924 3.33672 3.36837 3.38934 3.47502 3.53569 3.66031 4.26531 4.44127 4.46940 4.63585 4.67792 4.80834 4.90708 4.96942 5.00531 5.04702 5.17663 5.29383 5.30550 5.49350 5.53934 5.64321 5.68155 5.82375 5.98410 6.01869 6.05488 6.13296 6.22407 6.26252 6.41382 6.50969 6.63546 6.75211 6.76492 7.03547 7.19553 7.26217 7.60789 7.63674 7.69634 7.93461 8.28735 8.53469 8.95902 9.54382 11.05498 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.002082 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.869866 B =13447.947440 C =15348.751168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.079 3.921 11 O -0.360 6.360 12 C 0.526 3.474 13 O -0.516 6.516 14 C -0.202 4.202 15 C 0.078 3.922 16 N -0.549 5.549 17 H 0.420 0.580 18 C -0.014 4.014 19 C -0.038 4.038 20 C -0.137 4.137 21 C 0.109 3.891 22 N -0.294 5.294 23 N -0.332 5.332 24 C 0.174 3.826 25 C -0.148 4.148 26 C -0.092 4.092 27 C -0.138 4.138 28 C -0.094 4.094 29 C -0.124 4.124 30 C 0.054 3.946 31 H 0.263 0.737 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.188 0.812 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 -30.214 3.092 31.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.006 3.994 11 O -0.276 6.276 12 C 0.371 3.629 13 O -0.406 6.406 14 C -0.210 4.210 15 C -0.058 4.058 16 N -0.143 5.143 17 H 0.257 0.743 18 C -0.142 4.142 19 C -0.045 4.045 20 C -0.148 4.148 21 C -0.079 4.079 22 N -0.111 5.111 23 N -0.107 5.107 24 C 0.081 3.919 25 C -0.169 4.169 26 C -0.111 4.111 27 C -0.157 4.157 28 C -0.113 4.113 29 C -0.144 4.144 30 C -0.087 4.087 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.202 0.798 37 H 0.189 0.811 38 H 0.205 0.795 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.629 -30.129 2.841 31.209 hybrid contribution -0.807 0.987 0.270 1.303 sum 6.822 -29.142 3.111 30.091 Atomic orbital electron populations 1.69960 1.06055 1.26983 1.49986 1.24975 0.94917 0.99328 0.94959 0.86545 0.79487 0.82536 0.78796 1.20073 1.21180 1.20092 1.20965 0.93174 0.90201 1.51929 0.92332 1.19149 0.94215 0.89105 0.98716 1.23551 0.96238 0.78791 1.00824 1.86563 1.42079 1.15567 1.83425 1.20098 0.85456 0.84285 0.73042 1.90808 1.14834 1.88145 1.46810 1.19620 0.92259 0.90469 1.18666 1.22189 0.97403 0.85000 1.01225 1.41486 1.08811 1.06294 1.57725 0.74300 1.21707 0.83429 0.97556 1.11557 1.18146 0.89559 0.90186 1.06609 1.18058 0.92292 1.03436 1.00995 1.24088 0.88569 0.96678 0.98575 1.77339 1.22893 1.07949 1.02917 1.45773 1.04678 1.33873 1.26339 1.17572 0.87165 0.93387 0.93801 1.20821 1.00686 0.98747 0.96602 1.20952 0.92363 0.98519 0.99270 1.21200 0.96781 0.99891 0.97783 1.21079 0.99070 0.95551 0.95578 1.20954 0.90473 1.01278 1.01704 1.22566 0.83603 1.01690 1.00818 0.92747 0.95424 0.95461 0.92540 0.92445 0.79754 0.81116 0.79480 0.85318 0.85162 0.85589 0.85178 0.84401 0.80657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.67 5.35 -27.89 -0.15 0.52 16 10 C 0.08 1.82 5.42 37.16 0.20 2.02 16 11 O -0.36 -7.43 10.06 -40.76 -0.41 -7.84 16 12 C 0.53 10.01 7.94 34.26 0.27 10.28 16 13 O -0.52 -10.94 14.37 -19.32 -0.28 -11.22 16 14 C -0.20 -2.99 6.30 -103.19 -0.65 -3.64 16 15 C 0.08 0.85 11.71 -16.87 -0.20 0.65 16 16 N -0.55 -4.07 5.88 -12.60 -0.07 -4.15 16 17 H 0.42 1.47 8.96 -40.82 -0.37 1.10 16 18 C -0.01 -0.12 11.87 -16.44 -0.20 -0.32 16 19 C -0.04 -0.48 6.18 -102.90 -0.64 -1.12 16 20 C -0.14 -1.87 5.47 -105.34 -0.58 -2.45 16 21 C 0.11 1.67 10.38 -17.04 -0.18 1.49 16 22 N -0.29 -4.55 11.83 30.81 0.36 -4.19 16 23 N -0.33 -4.42 3.81 -10.32 -0.04 -4.46 16 24 C 0.17 1.98 6.69 -83.60 -0.56 1.42 16 25 C -0.15 -1.28 9.46 -39.40 -0.37 -1.65 16 26 C -0.09 -0.65 10.04 -39.61 -0.40 -1.05 16 27 C -0.14 -0.96 10.04 -39.55 -0.40 -1.36 16 28 C -0.09 -0.76 10.04 -39.61 -0.40 -1.16 16 29 C -0.12 -1.33 9.66 -39.40 -0.38 -1.71 16 30 C 0.05 0.64 10.78 -16.46 -0.18 0.47 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.19 2.80 7.83 -52.49 -0.41 2.39 16 39 H 0.13 0.86 6.74 -52.49 -0.35 0.50 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.14 1.57 7.69 -52.48 -0.40 1.16 16 44 H 0.18 1.39 7.05 -52.49 -0.37 1.02 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -36.47 389.17 -9.31 -45.78 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.25 Total: 0.61 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -5.20 Total: -11.29 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.99 Total: -38.62 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.69 Total: -19.07 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.47 -9.31 -45.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064094986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.248 kcal (2) G-P(sol) polarization free energy of solvation -36.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds