Wall clock time and date at job start Tue Mar 31 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35829 * 117.00151 * 2 1 4 4 C 1.38883 * 119.89045 * 359.97438 * 3 2 1 5 5 C 1.37722 * 120.18437 * 180.02562 * 4 3 2 6 6 C 1.40074 * 119.96559 * 0.02562 * 5 4 3 7 7 C 1.46713 * 120.10788 * 179.97438 * 6 5 4 8 8 C 1.36234 * 119.99614 * 31.26898 * 7 6 5 9 9 C 1.43200 * 119.99756 * 187.04888 * 8 7 6 10 10 N 8.91770 * 109.43060 * 2.59527 * 2 1 3 11 11 C 1.47999 * 120.00213 * 7.04793 * 8 7 6 12 12 C 1.39531 * 119.74163 * 236.15508 * 11 8 7 13 13 C 1.38320 * 119.05700 * 180.02562 * 12 11 8 14 14 C 1.38853 * 118.52477 * 359.97438 * 13 12 11 15 15 C 1.38233 * 119.40392 * 0.28411 * 14 13 12 16 16 N 1.31773 * 120.90824 * 359.39730 * 15 14 13 17 17 C 1.40078 * 119.78481 * 0.27520 * 6 5 4 18 18 C 1.38070 * 119.81612 * 359.44394 * 17 6 5 19 19 O 1.35993 * 119.98904 * 180.29678 * 18 17 6 20 20 C 1.42898 * 116.99726 * 0.26234 * 19 18 17 21 21 C 1.53002 * 109.46945 * 179.97438 * 20 19 18 22 22 C 1.50706 * 109.46743 * 179.97438 * 21 20 19 23 23 H 1.07997 * 120.00160 * 0.02562 * 22 21 20 24 24 C 1.37881 * 119.99470 * 180.02562 * 22 21 20 25 25 N 1.31513 * 119.99553 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00094 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46813 * 90.00337 * 26 24 22 28 28 H 1.48503 * 109.47074 * 209.99663 * 26 24 22 29 29 H 1.48498 * 109.47287 * 330.00422 * 26 24 22 30 30 H 1.09001 * 109.46812 * 60.00530 * 1 2 3 31 31 H 1.09007 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47281 * 300.00252 * 1 2 3 33 33 H 1.08001 * 119.90142 * 0.04617 * 4 3 2 34 34 H 1.08003 * 120.01643 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00132 * 211.25874 * 7 6 5 36 36 H 1.07997 * 120.47800 * 0.02562 * 12 11 8 37 37 H 1.07996 * 120.73761 * 180.02562 * 13 12 11 38 38 H 1.08006 * 120.29734 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.54781 * 179.69906 * 15 14 13 40 40 H 1.08002 * 120.09531 * 179.72235 * 17 6 5 41 41 H 1.09002 * 109.47224 * 299.99693 * 20 19 18 42 42 H 1.09002 * 109.47641 * 59.99888 * 20 19 18 43 43 H 1.08998 * 109.47264 * 299.99530 * 21 20 19 44 44 H 1.09000 * 109.47166 * 60.00071 * 21 20 19 45 45 H 0.97005 * 119.99897 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2871 2.3736 -0.0005 5 6 1.9060 3.6039 -0.0011 6 6 3.3045 3.6835 -0.0016 7 6 3.9672 4.9924 -0.0028 8 6 3.3752 6.0560 0.6091 9 6 3.9442 7.3638 0.4804 10 7 4.3956 8.4012 0.3808 11 6 2.1442 5.8598 1.4069 12 6 0.9958 6.5900 1.0985 13 6 -0.1467 6.3958 1.8536 14 6 -0.1058 5.4769 2.8938 15 6 1.0673 4.7913 3.1480 16 7 2.1408 4.9898 2.4100 17 6 4.0683 2.5093 -0.0075 18 6 3.4385 1.2806 -0.0010 19 8 4.1766 0.1384 -0.0005 20 6 5.5981 0.2846 -0.0011 21 6 6.2530 -1.0981 0.0002 22 6 7.7522 -0.9438 -0.0010 23 1 8.1936 0.0418 -0.0022 24 6 8.5601 -2.0611 -0.0007 25 7 9.8683 -1.9265 -0.0013 26 14 7.7965 -3.7659 0.0019 27 1 7.5927 -4.2191 -1.3975 28 1 8.7016 -4.7126 0.7019 29 1 6.4883 -3.7213 0.7033 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2088 2.3132 -0.0002 34 1 1.3135 4.5068 -0.0011 35 1 4.9242 5.1128 -0.4885 36 1 0.9989 7.2967 0.2818 37 1 -1.0506 6.9461 1.6385 38 1 -0.9815 5.3025 3.5015 39 1 1.1032 4.0797 3.9595 40 1 5.1469 2.5648 -0.0124 41 1 5.9067 0.8324 -0.8916 42 1 5.9073 0.8335 0.8884 43 1 5.9445 -1.6455 0.8909 44 1 5.9439 -1.6474 -0.8891 45 1 10.4368 -2.7125 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064367225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:35 Heat of formation + Delta-G solvation = 39.683735 kcal Electronic energy + Delta-G solvation = -29250.774113 eV Core-core repulsion = 25200.093833 eV Total energy + Delta-G solvation = -4050.680280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.142 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.92351 -40.22153 -38.35756 -37.62690 -36.76914 -34.39434 -33.30339 -32.71295 -31.38463 -31.00328 -29.85475 -29.20691 -27.33420 -25.34000 -24.76099 -23.76149 -22.98085 -22.31084 -21.06757 -20.37489 -18.51213 -18.43130 -17.41659 -16.73829 -16.55906 -16.43580 -16.23329 -16.00530 -15.34414 -15.16222 -14.89120 -14.81123 -14.38750 -14.30302 -14.00405 -13.88674 -13.59685 -13.42468 -13.29074 -13.00410 -12.92067 -12.74461 -12.48561 -12.19411 -12.04296 -11.82910 -11.78910 -11.36662 -11.25220 -10.98950 -10.85772 -10.32766 -10.19232 -10.08733 -9.96310 -9.80961 -9.69161 -9.33287 -9.18203 -8.61150 -8.53866 -7.54829 -6.12360 -4.13164 0.14058 0.78292 0.94936 1.36925 1.75821 2.38523 3.05220 3.21922 3.30005 3.34374 3.37264 3.43484 3.59265 3.64904 3.78984 4.08638 4.36730 4.40612 4.51162 4.59178 4.72094 4.73427 4.81261 4.86053 4.99951 5.01875 5.04701 5.22059 5.23163 5.25431 5.35085 5.36711 5.51100 5.54922 5.73842 5.78358 5.83260 5.90191 5.91898 6.11222 6.13756 6.30450 6.38567 6.47873 6.60400 7.00104 7.23810 7.24671 7.26224 7.63907 7.64997 7.90296 8.39656 8.88404 9.48146 11.00116 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.002675 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.496707 B =10464.333663 C =12157.634626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.112 3.888 4 C -0.180 4.180 5 C -0.093 4.093 6 C -0.075 4.075 7 C 0.040 3.960 8 C -0.053 4.053 9 C 0.262 3.738 10 N -0.419 5.419 11 C 0.185 3.815 12 C -0.166 4.166 13 C -0.073 4.073 14 C -0.174 4.174 15 C 0.109 3.891 16 N -0.455 5.455 17 C -0.143 4.143 18 C 0.115 3.885 19 O -0.307 6.307 20 C 0.070 3.930 21 C -0.008 4.008 22 C -0.526 4.526 23 H 0.075 0.925 24 C 0.072 3.928 25 N -0.898 5.898 26 Si 0.880 3.120 27 H -0.275 1.275 28 H -0.286 1.286 29 H -0.262 1.262 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.855 14.292 2.147 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.066 3.934 4 C -0.199 4.199 5 C -0.112 4.112 6 C -0.076 4.076 7 C 0.016 3.984 8 C -0.058 4.058 9 C -0.053 4.053 10 N -0.094 5.094 11 C 0.048 3.952 12 C -0.186 4.186 13 C -0.099 4.099 14 C -0.194 4.194 15 C -0.049 4.049 16 N -0.163 5.163 17 C -0.162 4.162 18 C 0.068 3.932 19 O -0.221 6.221 20 C -0.004 4.004 21 C -0.045 4.045 22 C -0.564 4.564 23 H 0.093 0.907 24 C -0.130 4.130 25 N -0.536 5.536 26 Si 0.706 3.294 27 H -0.201 1.201 28 H -0.212 1.212 29 H -0.187 1.187 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.163 0.837 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.206 14.928 2.206 28.524 hybrid contribution -1.306 -0.516 -0.063 1.406 sum -25.512 14.413 2.143 29.380 Atomic orbital electron populations 1.23061 0.78915 1.03933 1.00948 1.86209 1.20699 1.26027 1.88346 1.18549 0.89412 0.85021 1.00409 1.20817 0.99546 0.91280 1.08248 1.21088 0.93248 0.97092 0.99748 1.18322 0.92784 0.91435 1.05035 1.22544 0.96268 0.89645 0.89915 1.16128 0.97417 0.86606 1.05609 1.25395 0.93689 0.92559 0.93643 1.81255 1.08270 1.10940 1.08949 1.19176 0.91290 0.92403 0.92360 1.22149 0.93408 1.01478 1.01595 1.21509 0.98163 0.96302 0.93908 1.22233 0.99977 0.98053 0.99088 1.22784 0.87916 0.97061 0.97118 1.67858 1.29599 1.14935 1.03932 1.21306 1.00802 0.90066 1.04071 1.18196 0.88377 0.86895 0.99695 1.86248 1.21087 1.27150 1.87583 1.23124 0.74649 1.02168 1.00462 1.19569 0.95918 0.91087 0.97964 1.20842 0.87972 0.95274 1.52317 0.90713 1.24927 0.94656 0.99283 0.94119 1.69895 1.03201 1.30277 1.50234 0.86771 0.79772 0.84055 0.78770 1.20080 1.21226 1.18661 0.92841 0.88265 0.92858 0.85073 0.85709 0.83750 0.84708 0.84666 0.84713 0.82429 0.83698 0.92486 0.92384 0.95367 0.95824 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.28 10.26 -33.89 -0.35 -4.63 16 3 C 0.11 1.59 6.71 -38.89 -0.26 1.33 16 4 C -0.18 -1.99 9.01 -39.53 -0.36 -2.35 16 5 C -0.09 -1.00 7.61 -39.08 -0.30 -1.30 16 6 C -0.08 -0.88 5.24 -105.10 -0.55 -1.43 16 7 C 0.04 0.39 9.53 -36.88 -0.35 0.04 16 8 C -0.05 -0.53 5.46 -104.69 -0.57 -1.10 16 9 C 0.26 2.91 15.19 -22.48 -0.34 2.57 16 10 N -0.42 -5.49 18.54 41.83 0.78 -4.71 16 11 C 0.19 1.79 3.47 -82.97 -0.29 1.50 16 12 C -0.17 -1.24 8.68 -39.07 -0.34 -1.58 16 13 C -0.07 -0.43 10.16 -39.32 -0.40 -0.83 16 14 C -0.17 -1.04 10.11 -39.36 -0.40 -1.44 16 15 C 0.11 0.89 11.17 -17.58 -0.20 0.69 16 16 N -0.46 -4.84 8.79 -9.81 -0.09 -4.92 16 17 C -0.14 -1.99 8.78 -38.95 -0.34 -2.33 16 18 C 0.12 1.86 6.69 -39.19 -0.26 1.60 16 19 O -0.31 -5.96 9.91 -34.40 -0.34 -6.30 16 20 C 0.07 1.40 4.68 37.16 0.17 1.57 16 21 C -0.01 -0.19 4.41 -27.88 -0.12 -0.31 16 22 C -0.53 -14.65 9.66 -34.44 -0.33 -14.99 16 23 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 24 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 25 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 26 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 30 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 33 H 0.13 1.10 6.27 -52.49 -0.33 0.77 16 34 H 0.13 1.16 5.03 -52.48 -0.26 0.90 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 38 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 39 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.15 1.93 6.28 -52.49 -0.33 1.60 16 41 H 0.06 1.07 7.65 -51.93 -0.40 0.68 16 42 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 43 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 44 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -34.12 389.22 -7.78 -41.90 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.40 Total: -2.51 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -4.34 Total: -15.15 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 1.46 Total: -36.03 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.69 Total: -10.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.12 -7.78 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064367225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.580 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds