Wall clock time and date at job start Tue Mar 31 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35940 * 117.00499 * 2 1 4 4 C 1.38729 * 120.02809 * 5.70065 * 3 2 1 5 5 C 1.38132 * 119.96506 * 179.97438 * 4 3 2 6 6 C 1.38469 * 120.03562 * 359.97438 * 5 4 3 7 7 F 1.35102 * 119.97513 * 180.02562 * 6 5 4 8 8 C 1.38436 * 120.05955 * 0.02562 * 6 5 4 9 9 C 1.38170 * 120.03039 * 359.74545 * 8 6 5 10 10 S 1.76198 * 120.01659 * 180.25499 * 9 8 6 11 11 O 1.42102 * 106.39953 * 229.42351 * 10 9 8 12 12 O 1.42090 * 106.40232 * 2.34203 * 10 9 8 13 13 N 1.65599 * 107.21614 * 115.88395 * 10 9 8 14 14 C 1.38852 * 120.00340 * 297.85965 * 13 10 9 15 15 C 1.39568 * 119.84014 * 314.65479 * 14 13 10 16 16 C 1.36339 * 120.15721 * 179.71239 * 15 14 13 17 17 C 1.40894 * 119.83908 * 0.55259 * 16 15 14 18 18 C 1.41129 * 120.15699 * 179.69739 * 17 16 15 19 19 H 1.08003 * 120.00063 * 208.19431 * 18 17 16 20 20 C 1.39868 * 120.00144 * 28.19900 * 18 17 16 21 21 N 1.30898 * 120.00080 * 11.35691 * 20 18 17 22 22 Si 1.86804 * 119.99868 * 191.36433 * 20 18 17 23 23 H 1.48491 * 109.47317 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47314 * 119.99896 * 22 20 18 25 25 H 1.48510 * 109.46735 * 239.99652 * 22 20 18 26 26 C 1.40881 * 119.68508 * 359.71879 * 17 16 15 27 27 C 1.36341 * 119.83858 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47371 * 175.37214 * 1 2 3 29 29 H 1.09002 * 109.46910 * 295.37520 * 1 2 3 30 30 H 1.08996 * 109.46861 * 55.36933 * 1 2 3 31 31 H 1.07992 * 120.01673 * 359.97438 * 4 3 2 32 32 H 1.08008 * 119.98053 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.98417 * 179.97438 * 8 6 5 34 34 H 0.97006 * 119.99494 * 117.86562 * 13 10 9 35 35 H 1.07989 * 119.92360 * 359.97062 * 15 14 13 36 36 H 1.08005 * 120.08339 * 180.27028 * 16 15 14 37 37 H 0.96997 * 120.00556 * 180.02562 * 21 20 18 38 38 H 1.07998 * 120.08042 * 179.97438 * 26 17 16 39 39 H 1.08009 * 119.91830 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2966 2.3724 0.1193 5 6 1.9252 3.6024 0.1197 6 6 3.3029 3.6767 0.0016 7 9 3.9165 4.8804 0.0026 8 6 4.0521 2.5188 -0.1175 9 6 3.4265 1.2868 -0.1134 10 16 4.3810 -0.1870 -0.2583 11 8 3.7665 -0.9646 -1.2767 12 8 5.7418 0.2192 -0.3052 13 7 4.1939 -1.0329 1.1530 14 6 4.6172 -0.4809 2.3547 15 6 5.8662 0.1367 2.4334 16 6 6.2859 0.6860 3.6086 17 6 5.4601 0.6187 4.7482 18 6 5.8906 1.1795 5.9697 19 1 5.5358 0.7729 6.9053 20 6 6.7765 2.2618 5.9687 21 7 7.0334 2.8963 4.8530 22 14 7.5932 2.8017 7.5596 23 1 7.1386 1.9278 8.6708 24 1 9.0679 2.6977 7.4191 25 1 7.2220 4.2092 7.8537 26 6 4.2030 -0.0113 4.6627 27 6 3.7941 -0.5517 3.4796 28 1 -0.3634 -1.0242 -0.0829 29 1 -0.3633 0.4404 0.9285 30 1 -0.3633 0.5840 -0.8456 31 1 0.2222 2.3147 0.2118 32 1 1.3419 4.5066 0.2130 33 1 5.1265 2.5782 -0.2100 34 1 3.7885 -1.9142 1.1401 35 1 6.5001 0.1833 1.5604 36 1 7.2509 1.1675 3.6670 37 1 7.6481 3.6466 4.8522 38 1 3.5650 -0.0669 5.5323 39 1 2.8307 -1.0354 3.4127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065362149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:31 Heat of formation + Delta-G solvation = -102.370309 kcal Electronic energy + Delta-G solvation = -29082.245179 eV Core-core repulsion = 24803.836863 eV Total energy + Delta-G solvation = -4278.408315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 351.077 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.76337 -40.28948 -38.06640 -37.43317 -36.66069 -35.47614 -34.77938 -32.79908 -31.66837 -29.89883 -29.56912 -28.71716 -27.45170 -24.73930 -23.69390 -22.42624 -21.25841 -20.90583 -19.39279 -18.46122 -17.65763 -17.39356 -17.19627 -17.11965 -16.39149 -16.00547 -15.67857 -15.39537 -15.21932 -14.88837 -14.60949 -14.48684 -14.06443 -13.51795 -13.27359 -13.02257 -12.83208 -12.68091 -12.42540 -12.25768 -12.09815 -11.88968 -11.71879 -11.64228 -11.61106 -11.37687 -11.14747 -11.13840 -10.75954 -10.61478 -10.53493 -10.16982 -9.77515 -9.58114 -9.32852 -8.94424 -8.32081 -7.64121 -7.15067 -6.79204 -4.40076 0.57687 0.87141 1.10498 2.66020 2.93618 3.01509 3.05361 3.09907 3.11689 3.16400 3.47832 3.88955 4.02260 4.22791 4.43232 4.55617 4.57878 4.84127 4.94325 5.02490 5.11278 5.28378 5.35218 5.48462 5.57588 5.75350 5.86372 5.95827 6.13513 6.20225 6.37622 6.54679 6.92493 6.98718 6.99073 7.12504 7.15654 7.44759 7.55975 7.84620 7.98132 8.08814 8.19917 8.56447 8.80911 8.88983 10.14065 Molecular weight = 351.08amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.004058 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.385791 B = 6898.351917 C = 7623.911147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.216 3.784 4 C -0.202 4.202 5 C -0.064 4.064 6 C 0.045 3.955 7 F -0.136 7.136 8 C -0.009 4.009 9 C -0.670 4.670 10 S 2.689 3.311 11 O -0.966 6.966 12 O -0.953 6.953 13 N -1.024 6.024 14 C -0.008 4.008 15 C -0.122 4.122 16 C -0.145 4.145 17 C 0.109 3.891 18 C -0.453 4.453 19 H 0.079 0.921 20 C 0.072 3.928 21 N -0.792 5.792 22 Si 0.911 3.089 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.215 4.215 27 C -0.088 4.088 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.412 0.588 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.282 0.718 38 H 0.095 0.905 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 -0.597 -7.981 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.168 3.832 4 C -0.222 4.222 5 C -0.083 4.083 6 C 0.025 3.975 7 F -0.114 7.114 8 C -0.028 4.028 9 C -0.754 4.754 10 S 2.779 3.221 11 O -0.956 6.956 12 O -0.943 6.943 13 N -0.776 5.776 14 C -0.104 4.104 15 C -0.143 4.143 16 C -0.165 4.165 17 C 0.105 3.895 18 C -0.483 4.483 19 H 0.097 0.903 20 C -0.146 4.146 21 N -0.417 5.417 22 Si 0.736 3.264 23 H -0.184 1.184 24 H -0.196 1.196 25 H -0.200 1.200 26 C -0.236 4.236 27 C -0.110 4.110 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.180 0.820 34 H 0.248 0.752 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.448 -0.617 -8.890 13.732 hybrid contribution -0.605 1.000 1.185 1.664 sum -11.052 0.383 -7.705 13.478 Atomic orbital electron populations 1.23193 0.77214 1.04764 1.01718 1.86136 1.22499 1.25836 1.87207 1.18267 0.90425 0.84991 0.89506 1.21105 1.00652 0.91338 1.09075 1.21149 0.92859 0.98828 0.95422 1.17520 0.90981 0.80942 1.08097 1.91517 1.83180 1.42319 1.94412 1.20827 1.01469 0.89188 0.91357 1.30224 1.04224 1.19629 1.21346 1.02544 0.74072 0.72873 0.72651 1.93544 1.78015 1.68467 1.55535 1.93544 1.31744 1.83025 1.86021 1.52258 1.76269 1.27432 1.21646 1.16817 0.96171 1.11996 0.85377 1.21210 0.93770 0.99827 0.99516 1.21068 1.00783 1.02474 0.92210 1.17752 0.89708 0.88652 0.93343 1.19622 1.22505 1.12308 0.93898 0.90282 1.25942 0.95003 0.95693 0.97959 1.69821 1.27845 1.16241 1.27805 0.86207 0.79439 0.78926 0.81841 1.18442 1.19643 1.19970 1.20657 0.97438 1.09000 0.96495 1.20275 0.96899 1.00496 0.93310 0.87493 0.92021 0.92141 0.83843 0.83890 0.82017 0.75186 0.85681 0.85654 0.90710 0.88649 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.82 101.05 0.99 1.21 16 2 O -0.30 -4.17 9.31 -28.46 -0.26 -4.43 16 3 C 0.22 3.24 6.63 -39.23 -0.26 2.98 16 4 C -0.20 -2.49 9.03 -39.44 -0.36 -2.84 16 5 C -0.06 -0.81 10.02 -39.54 -0.40 -1.21 16 6 C 0.04 0.70 7.30 -39.42 -0.29 0.41 16 7 F -0.14 -2.16 17.27 2.25 0.04 -2.12 16 8 C -0.01 -0.15 9.52 -39.53 -0.38 -0.52 16 9 C -0.67 -11.44 5.79 -39.44 -0.23 -11.67 16 10 S 2.69 48.70 5.20 -107.50 -0.56 48.14 16 11 O -0.97 -18.24 17.33 -62.26 -1.08 -19.31 16 12 O -0.95 -19.31 14.00 -57.17 -0.80 -20.11 16 13 N -1.02 -18.17 5.73 32.51 0.19 -17.99 16 14 C -0.01 -0.16 6.16 -83.69 -0.52 -0.68 16 15 C -0.12 -2.85 9.14 -39.77 -0.36 -3.21 16 16 C -0.15 -3.69 8.60 -39.26 -0.34 -4.02 16 17 C 0.11 2.78 5.56 -106.80 -0.59 2.18 16 18 C -0.45 -11.53 9.04 -37.88 -0.34 -11.88 16 19 H 0.08 1.92 7.87 -52.48 -0.41 1.51 16 20 C 0.07 1.75 5.24 -17.34 -0.09 1.66 16 21 N -0.79 -20.00 10.82 55.54 0.60 -19.40 16 22 Si 0.91 18.18 29.57 -169.99 -5.03 13.15 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 26 C -0.22 -4.97 9.74 -39.27 -0.38 -5.35 16 27 C -0.09 -1.84 9.90 -39.77 -0.39 -2.23 16 28 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 30 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 31 H 0.14 1.22 6.33 -52.49 -0.33 0.89 16 32 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.16 2.70 7.34 -52.49 -0.38 2.31 16 34 H 0.41 6.16 8.95 -34.47 -0.31 5.85 16 35 H 0.13 2.88 5.60 -52.49 -0.29 2.58 16 36 H 0.13 3.31 6.18 -52.48 -0.32 2.98 16 37 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 38 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 39 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -31.00 350.27 -9.24 -40.24 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -3.68 Total: 11.73 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -3.93 Total: -35.19 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.79 Total: -37.38 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -2.14 Total: -43.85 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 48.70 SS G_CDS: -0.56 Total: 48.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.00 -9.24 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065362149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.132 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds