Wall clock time and date at job start Tue Mar 31 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99632 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99492 * 3 2 1 5 5 H 1.48504 * 109.47265 * 29.99690 * 3 2 1 6 6 H 1.48504 * 109.47063 * 149.99764 * 3 2 1 7 7 C 1.38948 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99990 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.34776 * 119.99922 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00228 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99969 * 179.97438 * 10 9 7 13 13 C 1.53003 * 109.47115 * 174.00900 * 12 10 9 14 14 C 1.52999 * 109.47040 * 182.25750 * 13 12 10 15 15 C 1.50703 * 109.47256 * 62.71223 * 14 13 12 16 16 O 1.21282 * 119.99579 * 354.08386 * 15 14 13 17 17 N 1.34774 * 120.00188 * 174.08437 * 15 14 13 18 18 C 1.39001 * 120.00018 * 179.97438 * 17 15 14 19 19 N 1.29618 * 124.94228 * 359.70302 * 18 17 15 20 20 C 1.31988 * 116.91701 * 180.26313 * 19 18 17 21 21 C 1.33449 * 114.56936 * 359.97438 * 20 19 18 22 22 S 1.70966 * 124.94456 * 180.02562 * 18 17 15 23 23 C 1.52996 * 109.47240 * 302.26114 * 13 12 10 24 24 C 1.52995 * 109.47032 * 180.02562 * 23 13 12 25 25 C 1.53004 * 109.47037 * 299.99746 * 24 23 13 26 26 C 1.52996 * 109.47002 * 60.00235 * 25 24 23 27 27 C 1.52995 * 109.47032 * 299.99768 * 26 25 24 28 28 H 0.96999 * 120.00402 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00025 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47180 * 54.00933 * 12 10 9 31 31 H 1.08997 * 109.47108 * 294.01196 * 12 10 9 32 32 H 1.09005 * 109.47435 * 302.71288 * 14 13 12 33 33 H 1.08999 * 109.47346 * 182.71295 * 14 13 12 34 34 H 0.97003 * 119.99559 * 0.02562 * 17 15 14 35 35 H 1.08000 * 122.72126 * 180.02562 * 20 19 18 36 36 H 1.07997 * 125.97012 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.46746 * 299.99499 * 23 13 12 38 38 H 1.08991 * 109.47249 * 59.99783 * 23 13 12 39 39 H 1.09002 * 109.47642 * 179.97438 * 24 23 13 40 40 H 1.09001 * 109.47313 * 59.99945 * 24 23 13 41 41 H 1.08993 * 109.47137 * 299.99624 * 25 24 23 42 42 H 1.09002 * 109.47111 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47083 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.47116 * 59.99943 * 26 25 24 45 45 H 1.09001 * 109.47313 * 300.00055 * 27 26 25 46 46 H 1.09009 * 109.47079 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5608 -2.3703 0.0011 13 6 6.0709 -3.8049 0.1516 14 6 7.5998 -3.7993 0.2082 15 6 8.0548 -3.0336 1.4238 16 8 7.2437 -2.4506 2.1118 17 7 9.3628 -2.9966 1.7465 18 6 9.7824 -2.2899 2.8675 19 7 9.0016 -1.6297 3.6641 20 6 9.5711 -1.0098 4.6807 21 6 10.8962 -1.1535 4.7465 22 16 11.4044 -2.1585 3.3917 23 6 5.5150 -4.4111 1.4417 24 6 6.0256 -5.8454 1.5925 25 6 5.5631 -6.6799 0.3964 26 6 6.1190 -6.0737 -0.8937 27 6 5.6084 -4.6394 -1.0445 28 1 -0.4851 0.8400 -0.0004 29 1 3.8648 -0.3632 0.0007 30 1 5.9241 -1.7664 0.8326 31 1 5.9241 -1.9521 -0.9376 32 1 7.9949 -3.3238 -0.6896 33 1 7.9651 -4.8246 0.2669 34 1 10.0114 -3.4626 1.1960 35 1 9.0101 -0.4336 5.4016 36 1 11.5440 -0.7271 5.4981 37 1 5.8450 -3.8169 2.2939 38 1 4.4259 -4.4151 1.4014 39 1 5.6300 -6.2773 2.5119 40 1 7.1149 -5.8410 1.6331 41 1 4.4739 -6.6844 0.3559 42 1 5.9265 -7.7019 0.5040 43 1 5.7899 -6.6684 -1.7459 44 1 7.2082 -6.0693 -0.8532 45 1 4.5191 -4.6438 -1.0851 46 1 6.0048 -4.2073 -1.9635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065588541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:25 Heat of formation + Delta-G solvation = -18.002831 kcal Electronic energy + Delta-G solvation = -29841.958075 eV Core-core repulsion = 25858.794359 eV Total energy + Delta-G solvation = -3983.163716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10094 -39.86086 -38.54152 -37.34271 -35.14200 -33.91022 -32.79801 -31.54311 -30.38187 -30.10136 -28.52060 -26.86951 -25.10338 -24.23299 -22.39860 -22.30514 -21.01187 -19.72898 -19.45938 -19.20488 -18.37543 -17.80433 -16.80556 -16.54016 -16.03067 -15.66370 -15.20412 -15.09339 -14.71025 -14.61734 -14.45584 -14.05431 -13.77851 -13.51350 -13.35712 -13.22182 -13.04655 -12.67650 -12.30221 -12.01130 -11.83776 -11.82128 -11.59986 -11.36549 -11.22747 -11.14423 -10.98209 -10.78894 -10.50476 -10.44178 -10.28909 -10.00279 -9.87138 -9.72034 -9.63855 -9.58237 -9.32775 -9.12821 -8.51615 -8.11309 -8.03814 -6.22309 -3.72158 0.50477 0.71867 1.38813 2.38351 2.65078 2.90724 3.12554 3.16151 3.22472 3.89997 4.16126 4.19624 4.59716 4.77893 4.82140 4.99227 5.04576 5.14965 5.26919 5.28494 5.33370 5.34461 5.51934 5.61651 5.63485 5.66442 5.78939 5.79572 5.93254 5.96534 6.03493 6.12606 6.17103 6.24296 6.32015 6.43321 6.54471 6.64516 6.70186 6.73710 6.87385 7.06924 7.19908 7.62764 7.67980 8.04045 8.27594 8.70766 9.05973 9.54952 9.97503 10.91087 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.009239 B = 0.003587 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.046054 B = 7803.094080 C =10170.644259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.040 3.960 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.301 4.301 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.460 3.540 11 O -0.570 6.570 12 C -0.141 4.141 13 C -0.008 4.008 14 C -0.133 4.133 15 C 0.503 3.497 16 O -0.446 6.446 17 N -0.641 5.641 18 C 0.280 3.720 19 N -0.476 5.476 20 C 0.073 3.927 21 C -0.280 4.280 22 S 0.101 5.899 23 C -0.134 4.134 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.123 4.123 28 H 0.272 0.728 29 H 0.370 0.630 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.420 0.580 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.110 0.890 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.315 -6.768 3.300 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.162 4.162 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.430 4.430 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.247 3.753 11 O -0.455 6.455 12 C -0.181 4.181 13 C -0.009 4.009 14 C -0.173 4.173 15 C 0.288 3.712 16 O -0.312 6.312 17 N -0.293 5.293 18 C -0.089 4.089 19 N -0.198 5.198 20 C -0.078 4.078 21 C -0.420 4.420 22 S 0.349 5.651 23 C -0.171 4.171 24 C -0.152 4.152 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.160 4.160 28 H 0.082 0.918 29 H 0.203 0.797 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.257 0.743 35 H 0.196 0.804 36 H 0.196 0.804 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.128 0.872 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 26.376 -7.324 3.262 27.568 hybrid contribution 0.653 1.790 0.393 1.945 sum 27.029 -5.534 3.655 27.831 Atomic orbital electron populations 1.69623 1.05610 1.27327 1.49982 1.25019 0.95456 0.97900 0.97809 0.86718 0.80036 0.84227 0.78799 1.19737 1.20258 1.19341 1.19445 0.79482 0.96504 1.47580 0.86278 1.42286 1.07447 1.06433 1.66835 1.19761 0.88560 0.84163 0.82784 1.90387 1.70008 1.30497 1.54583 1.21887 0.95164 0.97869 1.03222 1.19864 0.89323 0.94487 0.97262 1.22024 0.99472 1.00954 0.94862 1.21395 0.80551 0.81733 0.87522 1.90770 1.50383 1.39955 1.50116 1.43493 1.10410 1.50934 1.24513 1.23896 0.93027 0.98025 0.93925 1.66586 1.35840 1.12028 1.05315 1.21750 0.91263 0.98878 0.95884 1.26778 0.99497 1.10541 1.05211 1.83897 1.07761 1.49812 1.23593 1.22083 1.04495 0.94018 0.96499 1.21528 0.99124 0.96851 0.97667 1.21509 1.01659 0.97520 0.94795 1.21540 0.99269 0.97004 0.97452 1.21922 1.05392 0.93266 0.95431 0.91776 0.79740 0.88100 0.91178 0.88557 0.88046 0.74325 0.80384 0.80397 0.90704 0.88101 0.92773 0.93651 0.91387 0.93226 0.92559 0.93065 0.87234 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.96 55.50 0.77 -25.82 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 20.45 27.74 -169.99 -4.71 15.74 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -5.92 6.52 56.52 0.37 -5.55 16 7 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.80 5.09 -10.97 -0.06 -14.85 16 10 C 0.46 10.60 7.17 -10.99 -0.08 10.52 16 11 O -0.57 -14.49 10.97 5.55 0.06 -14.43 16 12 C -0.14 -2.50 4.53 -27.88 -0.13 -2.62 16 13 C -0.01 -0.12 0.26 -154.51 -0.04 -0.16 16 14 C -0.13 -1.41 4.07 -27.88 -0.11 -1.52 16 15 C 0.50 6.29 7.17 -10.98 -0.08 6.21 16 16 O -0.45 -7.62 10.02 5.56 0.06 -7.56 16 17 N -0.64 -6.11 5.40 -13.07 -0.07 -6.18 16 18 C 0.28 3.15 8.02 -87.35 -0.70 2.45 16 19 N -0.48 -6.68 8.65 -15.12 -0.13 -6.81 16 20 C 0.07 0.79 11.34 -19.16 -0.22 0.57 16 21 C -0.28 -2.27 11.35 29.06 0.33 -1.95 16 22 S 0.10 0.78 23.22 -107.50 -2.50 -1.72 16 23 C -0.13 -2.26 4.07 -26.74 -0.11 -2.37 16 24 C -0.11 -1.56 5.65 -26.73 -0.15 -1.71 16 25 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 26 C -0.12 -1.38 5.65 -26.74 -0.15 -1.53 16 27 C -0.12 -1.81 4.46 -26.73 -0.12 -1.92 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.37 8.45 5.76 -40.82 -0.24 8.22 16 30 H 0.10 1.88 5.50 -51.93 -0.29 1.60 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.86 4.81 -51.93 -0.25 0.61 16 34 H 0.42 2.19 8.82 -40.82 -0.36 1.83 16 35 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.07 1.39 5.50 -51.93 -0.29 1.10 16 38 H 0.10 2.11 5.54 -51.93 -0.29 1.83 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.53 6.49 -51.93 -0.34 0.20 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.50 6.37 -51.93 -0.33 0.16 16 45 H 0.11 2.07 5.50 -51.93 -0.29 1.79 16 46 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -35.78 364.18 -9.07 -44.85 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -6.02 Total: 14.85 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.96 Total: -3.56 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.52 Total: -53.66 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.12 Total: -21.99 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.71 Total: 15.74 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.50 Total: -1.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.78 -9.07 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065588541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.847 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds