Wall clock time and date at job start Tue Mar 31 2020 05:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46766 * 153.12595 * 3 2 1 5 5 N 1.46500 * 109.47054 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00174 * 270.00253 * 5 4 3 7 7 C 1.50706 * 109.46924 * 269.99475 * 6 5 4 8 8 H 1.07999 * 119.99925 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99760 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00305 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99549 * 180.02562 * 9 7 6 12 12 H 1.48489 * 109.47233 * 60.00521 * 11 9 7 13 13 H 1.48507 * 109.46975 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47209 * 300.00156 * 11 9 7 15 15 C 1.34783 * 119.99595 * 89.99590 * 5 4 3 16 16 O 1.21279 * 119.99500 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00353 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.47275 * 179.97438 * 17 15 5 19 19 C 1.53000 * 109.46935 * 179.97438 * 18 17 15 20 20 O 1.42898 * 109.46896 * 179.97438 * 19 18 17 21 21 C 1.35929 * 117.00101 * 180.02562 * 20 19 18 22 22 C 1.38701 * 120.05648 * 359.95940 * 21 20 19 23 23 C 1.38153 * 119.95853 * 180.02562 * 22 21 20 24 24 C 1.38285 * 120.07157 * 0.02562 * 23 22 21 25 25 C 1.38238 * 120.11971 * 0.02562 * 24 23 22 26 26 C 1.38255 * 120.04624 * 359.94924 * 25 24 23 27 27 Cl 1.73604 * 120.04140 * 180.02562 * 26 25 24 28 28 H 1.08996 * 109.47270 * 33.12132 * 3 2 1 29 29 H 1.09000 * 109.46865 * 273.12225 * 3 2 1 30 30 H 1.09004 * 109.47337 * 59.99691 * 4 3 2 31 31 H 1.09000 * 109.47126 * 299.99470 * 4 3 2 32 32 H 1.08997 * 109.47398 * 29.99801 * 6 5 4 33 33 H 1.09003 * 109.47132 * 149.99992 * 6 5 4 34 34 H 0.97000 * 120.00185 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.47134 * 59.99602 * 17 15 5 36 36 H 1.09004 * 109.46843 * 300.00056 * 17 15 5 37 37 H 1.08993 * 109.46849 * 59.99531 * 18 17 15 38 38 H 1.09001 * 109.46900 * 299.99952 * 18 17 15 39 39 H 1.09004 * 109.47148 * 60.00009 * 19 18 17 40 40 H 1.08996 * 109.47021 * 299.99617 * 19 18 17 41 41 H 1.08003 * 120.02367 * 0.04181 * 22 21 20 42 42 H 1.08001 * 119.96476 * 180.29683 * 23 22 21 43 43 H 1.08006 * 119.93616 * 179.97438 * 24 23 22 44 44 H 1.08008 * 119.97717 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.2876 -0.6521 5 7 4.5823 1.2886 -0.6516 6 6 5.3140 1.8627 0.4803 7 6 5.5644 3.3269 0.2259 8 1 5.2132 3.7841 -0.6873 9 6 6.2409 4.0830 1.1596 10 7 6.6682 3.5264 2.2718 11 14 6.5506 5.8980 0.8445 12 1 5.2525 6.6014 0.6858 13 1 7.2925 6.4800 1.9918 14 1 7.3536 6.0554 -0.3947 15 6 5.2569 0.7612 -1.6924 16 8 6.4697 0.7616 -1.6918 17 6 4.5042 0.1710 -2.8570 18 6 5.4991 -0.3537 -3.8941 19 6 4.7348 -0.9535 -5.0761 20 8 5.6641 -1.4431 -6.0450 21 6 5.1453 -2.0109 -7.1658 22 6 3.7706 -2.0958 -7.3290 23 6 3.2455 -2.6737 -8.4686 24 6 4.0890 -3.1682 -9.4465 25 6 5.4597 -3.0862 -9.2866 26 6 5.9904 -2.5083 -8.1482 27 17 7.7118 -2.4048 -7.9478 28 1 2.9717 -0.8598 -0.5615 29 1 2.9713 -0.0552 1.0262 30 1 2.7535 2.1482 -0.0905 31 1 2.7540 1.3435 -1.6782 32 1 4.7248 1.7475 1.3900 33 1 6.2668 1.3461 0.5967 34 1 7.1445 4.0582 2.9285 35 1 3.8774 0.9386 -3.3111 36 1 3.8776 -0.6492 -2.5064 37 1 6.1261 -1.1211 -3.4402 38 1 6.1253 0.4668 -4.2445 39 1 4.1075 -0.1863 -5.5300 40 1 4.1090 -1.7741 -4.7253 41 1 3.1109 -1.7100 -6.5657 42 1 2.1750 -2.7355 -8.5980 43 1 3.6762 -3.6200 -10.3364 44 1 6.1164 -3.4735 -10.0516 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065590949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:15 Heat of formation + Delta-G solvation = -37.806898 kcal Electronic energy + Delta-G solvation = -26920.634975 eV Core-core repulsion = 22864.161600 eV Total energy + Delta-G solvation = -4056.473375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50061 -39.39789 -37.91669 -36.91809 -36.56196 -35.33699 -33.88309 -32.82417 -31.19430 -30.87976 -30.26152 -28.23173 -26.55364 -24.09678 -23.77538 -22.88837 -22.39237 -21.23245 -18.88404 -18.32967 -17.65800 -16.85739 -16.60983 -16.53940 -16.44490 -16.11453 -15.52297 -15.07521 -14.98567 -14.74145 -14.25900 -14.24785 -14.01833 -13.83323 -13.54167 -13.11357 -12.78557 -12.47613 -12.42122 -12.38529 -12.20864 -12.12832 -11.81802 -11.78210 -11.70962 -11.46806 -11.27521 -11.17960 -11.03358 -10.99801 -10.90495 -10.67787 -10.61264 -10.21434 -9.75315 -9.27288 -9.07171 -8.51630 -8.48906 -7.88717 -6.10722 -4.15564 0.76204 0.95760 1.95649 2.68105 2.76654 2.78785 3.24932 3.25396 3.29036 3.33984 3.37473 3.63021 4.14635 4.36452 4.40320 4.44989 4.70665 4.74326 4.76039 4.86491 4.91248 4.94987 5.05548 5.08102 5.21063 5.23443 5.25584 5.29251 5.36464 5.44589 5.55455 5.71135 5.80033 5.81620 6.01798 6.02630 6.05729 6.20765 6.31026 6.90110 7.02226 7.33191 7.39551 7.52930 7.84925 8.14838 8.22113 8.80555 8.95006 9.50061 10.97371 Molecular weight = 350.12amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.002232 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.220204 B =12539.116547 C =14534.079788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.245 3.755 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.507 3.493 16 O -0.530 6.530 17 C -0.140 4.140 18 C -0.103 4.103 19 C 0.058 3.942 20 O -0.299 6.299 21 C 0.145 3.855 22 C -0.201 4.201 23 C -0.075 4.075 24 C -0.152 4.152 25 C -0.074 4.074 26 C -0.073 4.073 27 Cl -0.055 7.055 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.628 -14.306 -19.842 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.330 5.330 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.294 3.706 16 O -0.406 6.406 17 C -0.181 4.181 18 C -0.141 4.141 19 C -0.017 4.017 20 O -0.211 6.211 21 C 0.098 3.902 22 C -0.220 4.220 23 C -0.093 4.093 24 C -0.170 4.170 25 C -0.093 4.093 26 C -0.101 4.101 27 Cl -0.026 7.026 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.188 -14.201 -19.541 25.507 hybrid contribution 0.407 1.105 0.029 1.178 sum -7.781 -13.097 -19.512 24.755 Atomic orbital electron populations 1.81209 1.13066 1.08787 1.09238 1.29117 0.95111 0.93020 0.92870 1.19914 0.81303 1.01990 1.06038 1.21301 0.82277 0.96056 1.01244 1.48224 1.04804 1.58303 1.21632 1.19347 0.92632 0.93438 0.82005 1.21368 1.36921 0.94094 1.04463 0.92453 1.24916 0.95283 0.98785 0.94988 1.69904 1.38167 1.36483 1.08661 0.86579 0.78389 0.84730 0.77862 1.20258 1.21188 1.20151 1.20217 0.88110 0.78819 0.83461 1.90715 1.13827 1.57068 1.78986 1.21636 0.99131 1.01697 0.95615 1.21234 0.98058 1.02316 0.92519 1.22987 0.91910 0.98132 0.88625 1.86198 1.35968 1.72012 1.26967 1.18746 0.91324 0.93190 0.86926 1.21297 0.93106 1.06468 1.01099 1.21071 1.00258 0.95374 0.92646 1.21020 0.92509 1.03158 1.00348 1.20937 0.95786 0.97214 0.95319 1.20265 0.85392 1.07800 0.96619 1.98385 1.09720 1.97122 1.97409 0.87566 0.86480 0.88795 0.90605 0.94751 0.93548 0.92588 0.89027 0.89265 0.89806 0.89720 0.91720 0.91738 0.84445 0.85172 0.85057 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.22 18.54 42.15 0.78 -5.44 16 2 C 0.22 2.44 15.43 -20.76 -0.32 2.12 16 3 C -0.05 -0.49 6.03 -29.51 -0.18 -0.66 16 4 C 0.12 1.45 5.17 -4.04 -0.02 1.43 16 5 N -0.60 -10.42 2.46 -175.06 -0.43 -10.85 16 6 C 0.24 5.67 5.16 -5.19 -0.03 5.64 16 7 C -0.53 -13.95 9.39 -34.44 -0.32 -14.28 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 11 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.51 8.78 7.67 -10.98 -0.08 8.70 16 16 O -0.53 -11.91 15.56 5.56 0.09 -11.82 16 17 C -0.14 -1.56 4.25 -27.88 -0.12 -1.68 16 18 C -0.10 -1.21 4.87 -26.73 -0.13 -1.34 16 19 C 0.06 0.54 4.74 37.16 0.18 0.72 16 20 O -0.30 -3.52 9.60 -19.52 -0.19 -3.70 16 21 C 0.15 1.54 6.68 -39.20 -0.26 1.28 16 22 C -0.20 -1.66 9.04 -39.44 -0.36 -2.01 16 23 C -0.08 -0.51 10.04 -39.60 -0.40 -0.91 16 24 C -0.15 -1.01 10.04 -39.56 -0.40 -1.41 16 25 C -0.07 -0.59 9.83 -39.58 -0.39 -0.98 16 26 C -0.07 -0.76 6.33 -39.36 -0.25 -1.01 16 27 Cl -0.06 -0.62 28.51 -51.86 -1.48 -2.10 16 28 H 0.11 0.78 7.22 -51.93 -0.38 0.40 16 29 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.09 0.85 7.40 -51.93 -0.38 0.47 16 36 H 0.09 0.71 7.19 -51.93 -0.37 0.34 16 37 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 39 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 40 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 41 H 0.14 0.89 6.30 -52.48 -0.33 0.56 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 44 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -33.86 397.01 -8.60 -42.46 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.89 Total: -3.21 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.17 Total: -2.80 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 1.09 Total: -40.89 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.10 Total: -15.53 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.10 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.86 -8.60 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065590949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.652 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds