Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00226 * 2 1 4 4 C 1.52993 * 109.47222 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47169 * 65.00093 * 4 3 2 6 6 C 1.46501 * 120.00347 * 274.99848 * 5 4 3 7 7 C 1.50701 * 109.47095 * 276.04165 * 6 5 4 8 8 H 1.07998 * 119.99835 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99746 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99827 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00101 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.47356 * 90.00466 * 11 9 7 13 13 H 1.48509 * 109.46943 * 210.00124 * 11 9 7 14 14 H 1.48495 * 109.47190 * 329.99655 * 11 9 7 15 15 S 1.65603 * 120.00010 * 94.99468 * 5 4 3 16 16 O 1.42101 * 106.40346 * 151.17738 * 15 5 4 17 17 O 1.42100 * 106.40208 * 18.26182 * 15 5 4 18 18 C 1.76202 * 107.22206 * 264.72115 * 15 5 4 19 19 C 1.38247 * 119.97732 * 344.80933 * 18 15 5 20 20 C 1.38186 * 120.03536 * 180.29742 * 19 18 15 21 21 C 1.38483 * 120.00037 * 359.72690 * 20 19 18 22 22 F 1.35099 * 120.01854 * 180.02562 * 21 20 19 23 23 C 1.38411 * 119.96423 * 359.97438 * 21 20 19 24 24 C 1.38335 * 119.98123 * 164.55689 * 18 15 5 25 25 Cl 1.73589 * 120.00308 * 359.97342 * 24 18 15 26 26 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47335 * 300.00026 * 1 2 3 28 28 H 1.09000 * 109.47088 * 60.00287 * 1 2 3 29 29 H 1.09002 * 109.46990 * 59.99456 * 3 2 1 30 30 H 1.08996 * 109.46699 * 300.00047 * 3 2 1 31 31 H 1.08998 * 109.47673 * 304.99996 * 4 3 2 32 32 H 1.09004 * 109.47096 * 184.99981 * 4 3 2 33 33 H 1.09000 * 109.46565 * 36.03874 * 6 5 4 34 34 H 1.08993 * 109.47435 * 156.03482 * 6 5 4 35 35 H 0.96998 * 120.00090 * 180.02562 * 10 9 7 36 36 H 1.08000 * 119.98617 * 0.02562 * 19 18 15 37 37 H 1.08001 * 119.99674 * 179.70249 * 20 19 18 38 38 H 1.08004 * 120.02030 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0015 -0.8955 -1.3759 7 6 5.2890 -1.4271 -0.8007 8 1 6.0162 -0.7459 -0.3842 9 6 5.5385 -2.7831 -0.8064 10 7 6.6624 -3.2469 -0.3049 11 14 4.2803 -3.9613 -1.5262 12 1 4.5554 -4.1565 -2.9723 13 1 4.3676 -5.2676 -0.8250 14 1 2.9178 -3.3968 -1.3532 15 16 4.4473 1.5121 -2.5244 16 8 5.3991 0.7543 -3.2586 17 8 4.7255 2.7975 -1.9864 18 6 3.0470 1.7054 -3.5763 19 6 1.9540 0.8713 -3.4318 20 6 0.8577 1.0178 -4.2601 21 6 0.8511 2.0044 -5.2319 22 9 -0.2207 2.1484 -6.0416 23 6 1.9428 2.8435 -5.3726 24 6 3.0398 2.6951 -4.5428 25 17 4.4097 3.7467 -4.7186 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8508 0.5685 0.8427 32 1 3.9784 2.1765 0.0902 33 1 3.1578 -1.3210 -0.8325 34 1 3.9323 -1.1713 -2.4280 35 1 6.8381 -4.2009 -0.3092 36 1 1.9588 0.1018 -2.6740 37 1 0.0062 0.3627 -4.1498 38 1 1.9385 3.6135 -6.1299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065624656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -125.901814 kcal Electronic energy + Delta-G solvation = -28018.946476 eV Core-core repulsion = 23737.084908 eV Total energy + Delta-G solvation = -4281.861568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 351.054 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.44194 -39.41080 -38.06495 -36.94079 -36.69248 -35.67169 -35.33484 -32.49382 -31.49558 -31.01051 -29.93067 -27.31014 -25.96372 -23.72362 -23.54412 -22.67815 -21.66964 -19.02035 -18.25791 -17.64133 -17.34310 -16.79743 -16.60300 -16.26223 -16.09345 -15.80567 -15.38573 -15.24076 -14.87008 -14.37305 -14.24631 -14.00339 -13.87267 -13.73149 -13.53628 -12.60948 -12.50448 -12.41731 -12.19765 -11.91088 -11.80969 -11.75457 -11.68058 -11.47079 -11.36874 -11.25798 -10.98827 -10.76861 -10.68568 -10.38274 -10.22366 -9.65488 -9.53814 -9.47366 -9.28308 -8.56204 -8.24922 -6.05458 -4.04226 0.26017 0.63918 0.71687 1.55820 2.84673 3.24191 3.31339 3.35056 3.38204 3.72544 3.88465 3.98842 4.26748 4.41188 4.46464 4.73398 4.94857 5.02438 5.13456 5.15795 5.23009 5.26068 5.33372 5.41565 5.41894 5.45599 5.55071 5.60515 5.63116 5.67762 6.11195 6.24732 6.35230 6.76655 7.04880 7.21774 7.32798 7.59984 8.50461 8.99273 9.53486 11.08047 Molecular weight = 351.05amu Principal moments of inertia in cm(-1) A = 0.010652 B = 0.005032 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.911922 B = 5563.045082 C = 6220.506490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.372 6.372 3 C 0.037 3.963 4 C 0.120 3.880 5 N -0.968 5.968 6 C 0.220 3.780 7 C -0.528 4.528 8 H 0.080 0.920 9 C 0.075 3.925 10 N -0.895 5.895 11 Si 0.865 3.135 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.260 1.260 15 S 2.678 3.322 16 O -0.922 6.922 17 O -0.955 6.955 18 C -0.678 4.678 19 C 0.011 3.989 20 C -0.168 4.168 21 C 0.156 3.844 22 F -0.127 7.127 23 C -0.166 4.166 24 C 0.078 3.922 25 Cl -0.031 7.031 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.629 11.647 -5.422 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.290 6.290 3 C -0.042 4.042 4 C -0.006 4.006 5 N -0.808 5.808 6 C 0.097 3.903 7 C -0.567 4.567 8 H 0.098 0.902 9 C -0.128 4.128 10 N -0.533 5.533 11 Si 0.691 3.309 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.184 1.184 15 S 2.762 3.238 16 O -0.912 6.912 17 O -0.945 6.945 18 C -0.759 4.759 19 C -0.008 4.008 20 C -0.187 4.187 21 C 0.136 3.864 22 F -0.105 7.105 23 C -0.186 4.186 24 C 0.050 3.950 25 Cl -0.001 7.001 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.557 11.762 -5.620 19.541 hybrid contribution -1.709 -0.498 -0.918 2.003 sum -16.266 11.264 -6.538 20.837 Atomic orbital electron populations 1.22754 0.82216 1.02580 0.99471 1.88089 1.18552 1.27196 1.95185 1.23243 0.95643 0.85205 1.00091 1.21429 0.90634 0.99994 0.88582 1.57171 1.81832 1.18033 1.23735 1.19693 0.99704 0.73851 0.97021 1.21312 1.02399 0.93063 1.39937 0.90237 1.24818 0.95181 0.97982 0.94776 1.69887 1.23932 1.13933 1.45576 0.87020 0.82771 0.81161 0.79931 1.19912 1.20975 1.18434 1.02860 0.73796 0.73557 0.73632 1.93670 1.54792 1.70695 1.72041 1.93552 1.82697 1.40000 1.78249 1.31633 1.22674 1.04855 1.16744 1.21031 0.89421 0.94557 0.95797 1.21373 1.01210 0.99507 0.96607 1.17629 0.83659 0.95434 0.89630 1.91556 1.53099 1.94905 1.70926 1.21009 0.92456 1.02620 1.02522 1.20056 0.89772 0.91063 0.94118 1.98462 1.40688 1.64353 1.96642 0.89755 0.94329 0.94624 0.92218 0.93945 0.87607 0.87986 0.92516 0.95793 0.92559 0.82017 0.83173 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.37 -5.21 9.01 -35.23 -0.32 -5.53 16 3 C 0.04 0.47 6.28 37.15 0.23 0.70 16 4 C 0.12 1.87 6.10 -4.05 -0.02 1.85 16 5 N -0.97 -18.48 2.00 -115.67 -0.23 -18.72 16 6 C 0.22 4.91 3.01 -5.19 -0.02 4.89 16 7 C -0.53 -14.53 9.93 -34.44 -0.34 -14.87 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.89 -27.09 13.96 55.43 0.77 -26.32 16 11 Si 0.86 20.58 27.47 -169.99 -4.67 15.91 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 15 S 2.68 51.81 4.79 -107.50 -0.51 51.30 16 16 O -0.92 -21.60 17.16 -57.17 -0.98 -22.59 16 17 O -0.95 -18.39 15.15 -57.17 -0.87 -19.26 16 18 C -0.68 -10.68 5.84 -39.54 -0.23 -10.91 16 19 C 0.01 0.14 8.84 -39.60 -0.35 -0.21 16 20 C -0.17 -1.86 10.03 -39.51 -0.40 -2.25 16 21 C 0.16 1.75 7.30 -39.43 -0.29 1.46 16 22 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 23 C -0.17 -1.93 9.81 -39.48 -0.39 -2.32 16 24 C 0.08 1.13 6.30 -39.51 -0.25 0.88 16 25 Cl -0.03 -0.45 26.80 -51.86 -1.39 -1.84 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.49 7.41 -51.93 -0.38 0.11 16 31 H 0.11 1.73 8.11 -51.93 -0.42 1.31 16 32 H 0.10 1.44 6.88 -51.93 -0.36 1.09 16 33 H 0.06 1.21 5.65 -51.93 -0.29 0.92 16 34 H 0.02 0.54 7.12 -51.93 -0.37 0.17 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.16 2.17 6.42 -52.49 -0.34 1.84 16 37 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -33.26 350.91 -8.19 -41.45 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.29 Total: -1.03 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.04 Total: -17.36 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.54 Total: -45.03 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -2.17 Total: -47.37 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.51 Total: 51.30 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.39 Total: -1.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.26 -8.19 -41.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065624656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.449 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds