Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00162 * 2 1 4 4 C 1.38750 * 120.05329 * 4.97654 * 3 2 1 5 5 C 1.38129 * 119.94326 * 180.02562 * 4 3 2 6 6 C 1.38280 * 120.05451 * 359.97438 * 5 4 3 7 7 C 1.38248 * 120.11592 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05055 * 0.02562 * 7 6 5 9 9 S 1.76201 * 120.02543 * 179.97438 * 8 7 6 10 10 O 1.42098 * 106.39913 * 229.72087 * 9 8 7 11 11 O 1.42101 * 106.40477 * 2.64560 * 9 8 7 12 12 N 1.65608 * 107.21691 * 116.18451 * 9 8 7 13 13 C 1.39206 * 119.99682 * 294.76756 * 12 9 8 14 14 C 1.36171 * 126.22443 * 4.57102 * 13 12 9 15 15 C 1.39774 * 107.81478 * 179.84600 * 14 13 12 16 16 C 1.50693 * 125.83876 * 180.16246 * 15 14 13 17 17 N 1.30844 * 108.32068 * 0.42164 * 15 14 13 18 18 N 1.35255 * 126.21610 * 184.88382 * 13 12 9 19 19 C 1.46497 * 126.04255 * 359.97438 * 18 13 12 20 20 C 1.50706 * 109.46721 * 90.00935 * 19 18 13 21 21 H 1.08002 * 119.99903 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99717 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99831 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00392 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47139 * 89.99972 * 24 22 20 26 26 H 1.48496 * 109.47296 * 210.00541 * 24 22 20 27 27 H 1.48499 * 109.46707 * 330.00461 * 24 22 20 28 28 H 1.08997 * 109.47171 * 304.33350 * 1 2 3 29 29 H 1.08998 * 109.47001 * 64.33211 * 1 2 3 30 30 H 1.08998 * 109.47329 * 184.33078 * 1 2 3 31 31 H 1.08006 * 120.03176 * 0.05164 * 4 3 2 32 32 H 1.07994 * 119.97021 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.94316 * 180.28058 * 6 5 4 34 34 H 1.07994 * 119.97646 * 180.02562 * 7 6 5 35 35 H 0.97001 * 119.99971 * 114.77032 * 12 9 8 36 36 H 1.07997 * 126.09105 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.47513 * 275.29202 * 16 15 14 38 38 H 1.08996 * 109.47342 * 35.29264 * 16 15 14 39 39 H 1.09001 * 109.47314 * 155.29186 * 16 15 14 40 40 H 1.09000 * 109.47099 * 210.00070 * 19 18 13 41 41 H 1.08995 * 109.47416 * 330.00462 * 19 18 13 42 42 H 0.96994 * 120.00371 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2955 2.3732 0.1042 5 6 1.9249 3.6027 0.1034 6 6 3.3019 3.6758 -0.0005 7 6 4.0520 2.5191 -0.1044 8 6 3.4270 1.2869 -0.1052 9 16 4.3837 -0.1868 -0.2384 10 8 3.7841 -0.9627 -1.2668 11 8 5.7451 0.2195 -0.2646 12 7 4.1758 -1.0349 1.1688 13 6 4.6406 -0.5114 2.3720 14 6 5.2019 0.7160 2.5521 15 6 5.5239 0.8445 3.9062 16 6 6.1625 2.0475 4.5510 17 7 5.1810 -0.2606 4.5171 18 7 4.6221 -1.1320 3.5737 19 6 4.1077 -2.4773 3.8412 20 6 5.2180 -3.4823 3.6722 21 1 6.2076 -3.1519 3.3930 22 6 4.9701 -4.8237 3.8730 23 7 5.9391 -5.7006 3.7260 24 14 3.2583 -5.3953 4.3552 25 1 2.4707 -5.6875 3.1307 26 1 3.3615 -6.6242 5.1825 27 1 2.5819 -4.3284 5.1359 28 1 -0.3633 0.5796 0.8486 29 1 -0.3633 0.4451 -0.9262 30 1 -0.3634 -1.0247 0.0776 31 1 0.2200 2.3166 0.1862 32 1 1.3412 4.5077 0.1849 33 1 3.7925 4.6379 0.0036 34 1 5.1273 2.5788 -0.1851 35 1 3.7303 -1.8965 1.1545 36 1 5.3669 1.4588 1.7857 37 1 7.2451 1.9877 4.4396 38 1 5.7973 2.9546 4.0695 39 1 5.9070 2.0705 5.6104 40 1 3.7272 -2.5246 4.8615 41 1 3.3027 -2.7042 3.1423 42 1 5.7648 -6.6442 3.8676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066247968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = 2.511164 kcal Electronic energy + Delta-G solvation = -29776.521326 eV Core-core repulsion = 25658.414069 eV Total energy + Delta-G solvation = -4118.107257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.69635 -40.48506 -37.85318 -37.03908 -35.79708 -35.06759 -33.81473 -32.16160 -31.74800 -30.48606 -29.51462 -28.09832 -27.64736 -26.33424 -23.59535 -22.56182 -22.51929 -20.85687 -19.95842 -19.27397 -18.62548 -17.41322 -17.17619 -17.00255 -16.85041 -16.43659 -16.09907 -15.20727 -15.11231 -14.80860 -14.69168 -14.64697 -14.05947 -14.02431 -13.35160 -13.09074 -12.79707 -12.75184 -12.68580 -12.51402 -12.20669 -12.12885 -12.01493 -11.99059 -11.90019 -11.83795 -11.77119 -11.48854 -11.39238 -10.98062 -10.79405 -10.66585 -10.25766 -9.89559 -9.70796 -9.66234 -8.81532 -8.70083 -8.06164 -7.67303 -6.28409 -4.32659 0.29511 0.64551 1.07216 2.53149 2.75755 2.87224 3.11020 3.18516 3.19083 3.22919 3.32440 3.51962 3.79356 4.18329 4.26844 4.42696 4.67783 4.72065 4.85609 4.89102 4.95334 4.96661 5.09308 5.21027 5.21903 5.25445 5.42559 5.69223 5.73852 5.85391 5.95554 5.97718 6.02532 6.06313 6.20010 6.28980 6.34729 6.40604 6.75672 6.85587 6.90635 7.23509 7.31044 7.75231 8.26879 8.47802 8.78356 9.25715 10.83964 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.011066 B = 0.004422 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.573573 B = 6330.260169 C = 7228.933660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.228 3.772 4 C -0.229 4.229 5 C -0.026 4.026 6 C -0.176 4.176 7 C 0.020 3.980 8 C -0.702 4.702 9 S 2.710 3.290 10 O -0.940 6.940 11 O -0.939 6.939 12 N -1.023 6.023 13 C 0.341 3.659 14 C -0.332 4.332 15 C 0.074 3.926 16 C -0.065 4.065 17 N -0.284 5.284 18 N -0.335 5.335 19 C 0.229 3.771 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.080 3.920 23 N -0.882 5.882 24 Si 0.870 3.130 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.264 1.264 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.152 0.848 35 H 0.432 0.568 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 19.366 -7.639 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.179 3.821 4 C -0.248 4.248 5 C -0.044 4.044 6 C -0.195 4.195 7 C 0.000 4.000 8 C -0.790 4.790 9 S 2.798 3.202 10 O -0.930 6.930 11 O -0.929 6.929 12 N -0.774 5.774 13 C 0.115 3.885 14 C -0.366 4.366 15 C -0.091 4.091 16 C -0.124 4.124 17 N -0.108 5.108 18 N -0.119 5.119 19 C 0.110 3.890 20 C -0.584 4.584 21 H 0.102 0.898 22 C -0.124 4.124 23 N -0.519 5.519 24 Si 0.696 3.304 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.170 0.830 35 H 0.269 0.731 36 H 0.161 0.839 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.250 18.039 -7.227 22.454 hybrid contribution -1.836 -0.089 -0.230 1.852 sum -13.086 17.950 -7.457 23.431 Atomic orbital electron populations 1.23217 0.76814 1.05026 1.01745 1.86127 1.22939 1.26207 1.86983 1.18330 0.90432 0.85062 0.88235 1.21303 1.00506 0.92333 1.10705 1.21243 0.94900 0.97072 0.91177 1.21177 0.94014 0.98712 1.05568 1.20886 1.00749 0.89916 0.88405 1.30075 1.04112 1.19768 1.25030 1.01640 0.73903 0.73163 0.71462 1.93623 1.78519 1.68885 1.51947 1.93615 1.31242 1.82759 1.85282 1.52905 1.71100 1.33380 1.19989 1.17429 0.98277 0.91582 0.81235 1.20593 1.19846 0.97718 0.98414 1.21806 0.99894 0.95279 0.92132 1.20069 0.99943 0.92293 1.00087 1.77382 1.18910 1.00620 1.13909 1.48881 1.46139 1.14121 1.02737 1.19988 0.95430 0.75117 0.98494 1.21198 0.97198 0.90267 1.49739 0.89819 1.24813 0.97170 0.96183 0.94276 1.69867 1.32060 1.02353 1.47591 0.86941 0.84624 0.79351 0.79473 1.19563 1.20351 1.18810 0.92038 0.91936 0.87306 0.84599 0.85011 0.84686 0.83014 0.73055 0.83910 0.90793 0.91066 0.91317 0.92648 0.94441 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.87 101.05 1.00 1.21 16 2 O -0.31 -4.00 9.34 -27.46 -0.26 -4.25 16 3 C 0.23 2.92 6.63 -39.22 -0.26 2.66 16 4 C -0.23 -2.23 9.07 -39.43 -0.36 -2.59 16 5 C -0.03 -0.21 10.04 -39.61 -0.40 -0.61 16 6 C -0.18 -1.58 10.04 -39.56 -0.40 -1.98 16 7 C 0.02 0.23 8.21 -39.60 -0.32 -0.10 16 8 C -0.70 -9.79 5.19 -39.43 -0.20 -9.99 16 9 S 2.71 45.98 4.85 -107.50 -0.52 45.46 16 10 O -0.94 -17.39 17.37 -62.02 -1.08 -18.46 16 11 O -0.94 -17.45 15.39 -57.17 -0.88 -18.33 16 12 N -1.02 -18.87 5.87 31.11 0.18 -18.69 16 13 C 0.34 7.00 7.56 -153.40 -1.16 5.84 16 14 C -0.33 -6.24 9.17 -39.75 -0.36 -6.60 16 15 C 0.07 1.40 7.21 -82.44 -0.59 0.81 16 16 C -0.07 -0.88 10.44 36.00 0.38 -0.50 16 17 N -0.28 -6.33 12.56 33.65 0.42 -5.91 16 18 N -0.33 -7.67 3.60 -61.63 -0.22 -7.89 16 19 C 0.23 5.47 5.09 -5.19 -0.03 5.44 16 20 C -0.55 -15.33 9.94 -34.44 -0.34 -15.68 16 21 H 0.08 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 23 N -0.88 -26.29 13.96 55.43 0.77 -25.52 16 24 Si 0.87 19.98 27.47 -169.99 -4.67 15.31 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 28 H 0.06 0.40 7.17 -51.93 -0.37 0.03 16 29 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.14 0.94 6.28 -52.48 -0.33 0.61 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.15 1.58 7.20 -52.49 -0.38 1.20 16 35 H 0.43 7.62 8.06 -34.48 -0.28 7.35 16 36 H 0.14 2.31 5.17 -52.49 -0.27 2.04 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.32 7.20 -51.93 -0.37 0.95 16 41 H 0.04 0.81 6.87 -51.93 -0.36 0.46 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -36.65 366.18 -8.79 -45.44 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.91 Total: 7.27 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -3.15 Total: -19.94 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 1.16 Total: -58.01 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -2.21 Total: -41.05 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Atomic # 16 Polarization: 45.98 SS G_CDS: -0.52 Total: 45.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.65 -8.79 -45.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066247968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.951 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds