Wall clock time and date at job start Tue Mar 31 2020 05:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46821 * 243.33669 * 3 2 1 5 5 C 1.37096 * 120.00144 * 264.23004 * 4 3 2 6 6 H 1.08000 * 120.00158 * 197.72532 * 5 4 3 7 7 C 1.38954 * 119.99885 * 17.72011 * 5 4 3 8 8 N 1.31414 * 119.99364 * 21.40298 * 7 5 4 9 9 Si 1.86794 * 120.00333 * 201.39706 * 7 5 4 10 10 H 1.48505 * 109.47146 * 90.00113 * 9 7 5 11 11 H 1.48497 * 109.47597 * 210.00449 * 9 7 5 12 12 H 1.48503 * 109.47077 * 330.00497 * 9 7 5 13 13 C 1.34777 * 119.99820 * 84.23351 * 4 3 2 14 14 O 1.21289 * 119.99741 * 179.97438 * 13 4 3 15 15 C 1.50703 * 120.00146 * 0.02562 * 13 4 3 16 16 N 1.46500 * 109.46941 * 180.02562 * 15 13 4 17 17 C 1.34779 * 119.99771 * 179.97438 * 16 15 13 18 18 O 1.21582 * 119.99926 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99925 * 179.97438 * 17 16 15 20 20 C 1.46491 * 119.99879 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47252 * 180.02562 * 20 19 17 22 22 C 1.38245 * 119.98708 * 269.73018 * 21 20 19 23 23 C 1.38211 * 120.01449 * 179.72334 * 22 21 20 24 24 C 1.38357 * 119.98652 * 0.54585 * 23 22 21 25 25 Cl 1.73598 * 120.01462 * 179.70377 * 24 23 22 26 26 C 1.38353 * 119.97187 * 359.72654 * 24 23 22 27 27 C 1.38219 * 119.98526 * 0.02562 * 26 24 23 28 28 H 1.09003 * 109.47257 * 123.33474 * 3 2 1 29 29 H 1.09002 * 109.47265 * 3.33780 * 3 2 1 30 30 H 0.97004 * 119.99254 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.47202 * 59.99515 * 15 13 4 32 32 H 1.09001 * 109.46484 * 299.99525 * 15 13 4 33 33 H 0.96998 * 119.99968 * 359.97438 * 16 15 13 34 34 H 0.96998 * 119.99815 * 0.02562 * 19 17 16 35 35 H 1.09003 * 109.47121 * 60.00436 * 20 19 17 36 36 H 1.09001 * 109.47484 * 300.00465 * 20 19 17 37 37 H 1.08001 * 119.98905 * 359.97438 * 22 21 20 38 38 H 1.08003 * 120.00908 * 180.26925 * 23 22 21 39 39 H 1.08001 * 120.00669 * 179.97438 * 26 24 23 40 40 H 1.07999 * 119.99325 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.6207 1.2344 5 6 3.4364 1.9487 1.2463 6 1 4.0526 2.3411 2.0418 7 6 2.9888 2.7898 0.2349 8 7 1.9355 2.4579 -0.4775 9 14 3.8838 4.3922 -0.1120 10 1 4.9488 4.1562 -1.1197 11 1 2.9207 5.3941 -0.6350 12 1 4.4938 4.9002 1.1431 13 6 3.2104 -0.1144 2.3582 14 8 3.6148 0.3988 3.3800 15 6 2.8368 -1.5743 2.3449 16 7 3.0482 -2.1446 3.6777 17 6 2.7785 -3.4455 3.9046 18 8 2.3602 -4.1458 3.0030 19 7 2.9734 -3.9703 5.1306 20 6 2.6808 -5.3844 5.3771 21 6 2.9810 -5.7161 6.8161 22 6 4.2407 -6.1584 7.1750 23 6 4.5183 -6.4573 8.4955 24 6 3.5319 -6.3248 9.4566 25 17 3.8776 -6.7074 11.1142 26 6 2.2698 -5.8875 9.0960 27 6 1.9949 -5.5839 7.7759 28 1 2.9711 0.5656 -0.8586 29 1 2.9718 -1.0251 -0.0598 30 1 1.6228 3.0452 -1.1833 31 1 3.4578 -2.1017 1.6210 32 1 1.7877 -1.6783 2.0679 33 1 3.3822 -1.5859 4.3969 34 1 3.3075 -3.4116 5.8498 35 1 3.2983 -6.0022 4.7250 36 1 1.6281 -5.5788 5.1717 37 1 5.0092 -6.2664 6.4238 38 1 5.5037 -6.7987 8.7764 39 1 1.4993 -5.7842 9.8457 40 1 1.0097 -5.2430 7.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066645071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:22 Heat of formation + Delta-G solvation = -3.359519 kcal Electronic energy + Delta-G solvation = -26527.193617 eV Core-core repulsion = 22368.673649 eV Total energy + Delta-G solvation = -4158.519968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 350.093 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.25235 -39.59831 -38.76435 -36.97693 -35.98270 -35.00629 -34.52668 -33.88803 -32.02467 -31.53883 -31.42929 -28.11285 -27.39958 -25.91494 -24.28724 -23.30954 -21.81346 -20.83389 -19.61542 -18.59382 -18.05788 -17.53881 -16.55473 -16.34324 -16.20416 -16.08513 -15.43824 -15.35449 -14.80113 -14.55463 -14.22334 -14.14410 -13.97132 -13.94357 -13.65621 -13.50486 -13.07253 -13.02441 -12.47407 -12.27031 -11.94660 -11.93412 -11.82572 -11.73757 -11.64793 -11.33934 -11.24613 -11.22239 -10.63112 -10.47977 -10.41403 -10.17493 -9.50957 -9.37958 -9.25285 -9.11192 -8.83546 -8.69181 -8.18235 -6.60819 -4.11267 0.56898 0.83111 1.69103 2.69743 3.02450 3.16784 3.20426 3.26407 3.32345 3.44372 3.69141 3.94034 4.04631 4.26082 4.30589 4.42217 4.44282 4.68322 4.80637 4.82366 4.85741 5.13219 5.17479 5.27449 5.42095 5.49529 5.51153 5.71006 5.72023 5.76265 5.87012 6.05143 6.08778 6.29725 6.38719 6.43007 6.62366 7.00187 7.37510 7.74231 8.13328 8.15577 8.69735 8.71409 8.85208 9.06005 9.54789 10.44858 Molecular weight = 350.09amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.001749 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.280929 B =16007.957137 C =16791.939536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.243 3.757 3 C 0.217 3.783 4 N -0.432 5.432 5 C -0.316 4.316 6 H 0.111 0.889 7 C 0.033 3.967 8 N -0.872 5.872 9 Si 0.931 3.069 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.444 3.556 14 O -0.574 6.574 15 C 0.124 3.876 16 N -0.725 5.725 17 C 0.706 3.294 18 O -0.595 6.595 19 N -0.746 5.746 20 C 0.181 3.819 21 C -0.101 4.101 22 C -0.086 4.086 23 C -0.113 4.113 24 C -0.029 4.029 25 Cl -0.071 7.071 26 C -0.113 4.113 27 C -0.086 4.086 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.275 0.725 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.407 0.593 34 H 0.398 0.602 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -17.347 13.983 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.076 4.076 3 C 0.090 3.910 4 N -0.152 5.152 5 C -0.443 4.443 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.510 5.510 9 Si 0.757 3.243 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.232 3.768 14 O -0.458 6.458 15 C -0.004 4.004 16 N -0.383 5.383 17 C 0.406 3.594 18 O -0.474 6.474 19 N -0.403 5.403 20 C 0.057 3.943 21 C -0.102 4.102 22 C -0.105 4.105 23 C -0.132 4.132 24 C -0.056 4.056 25 Cl -0.042 7.042 26 C -0.132 4.132 27 C -0.105 4.105 28 H 0.148 0.852 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.244 0.756 34 H 0.232 0.768 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.777 -17.646 13.606 22.600 hybrid contribution 0.934 1.428 0.505 1.779 sum 4.711 -16.218 14.110 22.007 Atomic orbital electron populations 1.80911 1.13552 1.11841 1.08351 1.29206 0.95296 0.90274 0.92775 1.18818 0.81775 0.98283 0.92144 1.43567 1.55708 1.09861 1.06066 1.19745 1.30271 0.82727 1.11588 0.87138 1.25334 0.94878 0.99866 0.97045 1.69874 1.19529 1.39361 1.22247 0.85845 0.78982 0.80426 0.79042 1.20013 1.21050 1.19283 1.19977 0.84909 0.87892 0.83982 1.90521 1.51083 1.72969 1.31230 1.20936 1.02336 0.92977 0.84194 1.44766 1.70791 1.08940 1.13768 1.15816 0.78836 0.82000 0.82785 1.90920 1.52730 1.60310 1.43411 1.45060 1.72880 1.11142 1.11201 1.19983 1.02036 0.81529 0.90740 1.20060 0.94130 1.00384 0.95615 1.21127 0.96401 0.97318 0.95619 1.21090 0.99072 1.00817 0.92200 1.21033 0.95637 1.03099 0.85828 1.98384 1.95273 1.92739 1.17848 1.21096 0.95381 0.99665 0.97013 1.21140 0.99736 0.97888 0.91704 0.85176 0.89416 0.91396 0.89565 0.89904 0.75556 0.76792 0.90451 0.90497 0.84606 0.84702 0.84704 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.05 18.54 42.15 0.78 -10.27 16 2 C 0.24 5.28 12.95 -20.76 -0.27 5.01 16 3 C 0.22 4.14 4.91 -6.83 -0.03 4.11 16 4 N -0.43 -9.57 2.60 -117.93 -0.31 -9.88 16 5 C -0.32 -7.75 9.32 -14.93 -0.14 -7.89 16 6 H 0.11 2.85 7.39 -52.49 -0.39 2.46 16 7 C 0.03 0.79 4.87 -17.46 -0.08 0.71 16 8 N -0.87 -21.26 9.48 55.50 0.53 -20.73 16 9 Si 0.93 18.88 29.60 -169.99 -5.03 13.85 16 10 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 13 C 0.44 9.44 7.63 -10.98 -0.08 9.36 16 14 O -0.57 -13.68 15.32 5.55 0.09 -13.60 16 15 C 0.12 2.17 4.76 -5.19 -0.02 2.15 16 16 N -0.73 -11.48 5.53 -66.41 -0.37 -11.85 16 17 C 0.71 10.73 8.57 -86.91 -0.74 9.99 16 18 O -0.60 -11.03 16.34 5.29 0.09 -10.94 16 19 N -0.75 -8.16 5.55 -66.42 -0.37 -8.52 16 20 C 0.18 1.67 5.80 -5.20 -0.03 1.64 16 21 C -0.10 -0.76 5.25 -104.62 -0.55 -1.31 16 22 C -0.09 -0.59 9.70 -39.59 -0.38 -0.98 16 23 C -0.11 -0.78 9.83 -39.55 -0.39 -1.17 16 24 C -0.03 -0.22 6.32 -39.50 -0.25 -0.47 16 25 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.04 16 26 C -0.11 -0.80 9.83 -39.55 -0.39 -1.19 16 27 C -0.09 -0.62 9.70 -39.59 -0.38 -1.00 16 28 H 0.13 2.51 6.46 -51.93 -0.34 2.18 16 29 H 0.09 1.28 6.68 -51.93 -0.35 0.93 16 30 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 32 H 0.08 1.54 7.51 -51.93 -0.39 1.15 16 33 H 0.41 6.21 7.45 -40.82 -0.30 5.91 16 34 H 0.40 3.63 8.48 -40.82 -0.35 3.28 16 35 H 0.08 0.72 8.08 -51.93 -0.42 0.31 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -31.52 370.77 -8.43 -39.94 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.16 Total: 9.50 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: -3.75 Total: 18.94 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.26 Total: -61.25 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.17 Total: -24.54 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.52 -8.43 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.584 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds