Wall clock time and date at job start Tue Mar 31 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 119.99981 * 2 1 4 4 C 1.34771 * 119.99772 * 179.97438 * 2 1 3 5 5 O 1.21276 * 120.00340 * 5.18448 * 4 2 1 6 6 C 1.50710 * 119.99717 * 184.91274 * 4 2 1 7 7 H 1.08996 * 109.50062 * 25.48962 * 6 4 2 8 8 C 1.53117 * 109.50070 * 265.36981 * 6 4 2 9 9 C 1.53119 * 109.15968 * 182.40578 * 8 6 4 10 10 C 1.53043 * 109.27855 * 57.65142 * 9 8 6 11 11 N 1.46846 * 109.52282 * 300.82084 * 10 9 8 12 12 C 1.46897 * 110.99883 * 185.83821 * 11 10 9 13 13 C 1.50693 * 109.47154 * 168.98372 * 12 11 10 14 14 O 1.21277 * 120.00201 * 353.50002 * 13 12 11 15 15 N 1.34779 * 120.00074 * 173.50572 * 13 12 11 16 16 C 1.46506 * 119.99918 * 179.97438 * 15 13 12 17 17 C 1.50694 * 109.47220 * 90.00256 * 16 15 13 18 18 H 1.08002 * 119.99759 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00194 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47503 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46430 * 120.00242 * 21 19 17 24 24 H 1.48500 * 109.47038 * 239.99962 * 21 19 17 25 25 C 1.46497 * 119.99985 * 359.97438 * 15 13 12 26 26 C 1.53001 * 109.47020 * 90.00084 * 25 15 13 27 27 C 1.47196 * 109.47319 * 179.97438 * 26 25 15 28 28 N 9.91094 * 149.67853 * 49.69528 * 5 1 2 29 29 C 1.46853 * 111.19585 * 61.74525 * 11 10 9 30 30 H 1.09004 * 109.47285 * 270.00219 * 1 2 3 31 31 H 1.09000 * 109.47234 * 30.00709 * 1 2 3 32 32 H 1.09006 * 109.47292 * 150.00344 * 1 2 3 33 33 H 1.09006 * 109.47282 * 244.61142 * 3 2 1 34 34 H 1.09005 * 109.47077 * 4.60962 * 3 2 1 35 35 H 1.08997 * 109.47415 * 124.61157 * 3 2 1 36 36 H 1.09004 * 109.52410 * 302.30604 * 8 6 4 37 37 H 1.08996 * 109.52882 * 62.49813 * 8 6 4 38 38 H 1.08997 * 109.50182 * 297.70952 * 9 8 6 39 39 H 1.09001 * 109.50357 * 177.59278 * 9 8 6 40 40 H 1.08996 * 109.45902 * 180.80540 * 10 9 8 41 41 H 1.08999 * 109.45177 * 60.83282 * 10 9 8 42 42 H 1.09000 * 109.47630 * 288.98332 * 12 11 10 43 43 H 1.09003 * 109.46971 * 48.98013 * 12 11 10 44 44 H 1.08999 * 109.46722 * 210.00129 * 16 15 13 45 45 H 1.08999 * 109.46829 * 329.99695 * 16 15 13 46 46 H 0.96998 * 119.99694 * 180.02562 * 20 19 17 47 47 H 1.09006 * 109.47343 * 209.99847 * 25 15 13 48 48 H 1.08994 * 109.47351 * 330.00164 * 25 15 13 49 49 H 1.08994 * 109.47238 * 300.00209 * 26 25 15 50 50 H 1.09010 * 109.47306 * 60.00166 * 26 25 15 51 51 H 1.09002 * 109.45791 * 178.24218 * 29 11 10 52 52 H 1.08995 * 109.46623 * 58.27290 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5362 -2.2154 -0.0939 6 6 3.6417 -1.1695 0.1123 7 1 3.9703 -0.2622 0.6191 8 6 4.2583 -1.2258 -1.2881 9 6 5.7832 -1.2885 -1.1636 10 6 6.1720 -2.5091 -0.3264 11 7 5.5582 -2.4076 1.0038 12 6 6.0207 -3.4912 1.8810 13 6 5.5922 -3.2081 3.2978 14 8 5.0680 -2.1496 3.5727 15 7 5.7917 -4.1312 4.2594 16 6 5.3756 -3.8557 5.6368 17 6 3.9564 -4.3219 5.8357 18 1 3.4181 -4.7774 5.0177 19 6 3.3453 -4.1668 7.0619 20 7 4.0007 -3.6116 8.0577 21 14 1.5859 -4.7441 7.3081 22 1 1.0751 -5.3292 6.0425 23 1 1.5477 -5.7722 8.3791 24 1 0.7365 -3.5904 7.6989 25 6 6.4245 -5.4100 3.9272 26 6 7.9408 -5.2860 4.0892 27 6 8.5766 -6.5710 3.7561 28 7 9.0686 -7.5616 3.4987 29 6 4.0926 -2.3936 0.9125 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3634 -0.8901 -0.5138 33 1 2.7608 1.3631 -0.9285 34 1 1.4920 2.0956 0.0826 35 1 2.8846 1.2915 0.8457 36 1 3.8987 -2.1131 -1.8091 37 1 3.9749 -0.3340 -1.8471 38 1 6.1461 -0.3830 -0.6774 39 1 6.2262 -1.3718 -2.1561 40 1 7.2565 -2.5486 -0.2239 41 1 5.8207 -3.4150 -0.8204 42 1 5.5867 -4.4354 1.5521 43 1 7.1079 -3.5560 1.8362 44 1 6.0321 -4.3850 6.3274 45 1 5.4362 -2.7841 5.8272 46 1 3.5709 -3.5029 8.9205 47 1 6.0499 -6.1853 4.5957 48 1 6.1897 -5.6746 2.8963 49 1 8.3154 -4.5108 3.4209 50 1 8.1757 -5.0213 5.1203 51 1 3.6668 -2.3492 1.9149 52 1 3.7511 -3.3001 0.4128 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068970538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:36 Heat of formation + Delta-G solvation = -32.830286 kcal Electronic energy + Delta-G solvation = -32213.514632 eV Core-core repulsion = 28020.506835 eV Total energy + Delta-G solvation = -4193.007798 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 350.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.46620 -39.39838 -37.93499 -36.80727 -35.60603 -35.18600 -33.64196 -32.79914 -31.23042 -30.80663 -28.54978 -28.15147 -26.51153 -26.35054 -24.00313 -23.64101 -23.43859 -22.17978 -20.21058 -19.05641 -18.47611 -17.59651 -17.15281 -16.66963 -16.43211 -16.26248 -15.82983 -15.54710 -15.28367 -15.04317 -14.71477 -14.45637 -14.25237 -13.92295 -13.85535 -13.72828 -13.43253 -13.11779 -12.90596 -12.85109 -12.84666 -12.64600 -12.52760 -12.41317 -12.33408 -12.18092 -12.05154 -11.79593 -11.50731 -11.43438 -11.25947 -11.06719 -10.94867 -10.86155 -10.69854 -10.62658 -10.45683 -10.15311 -9.67440 -9.65141 -8.96643 -8.78748 -8.45482 -8.17372 -7.79759 -6.07046 -4.11115 2.58377 2.74171 2.82184 2.89003 3.29714 3.33145 3.38211 3.43837 3.53764 3.94044 4.26158 4.42720 4.47817 4.69108 4.74776 4.85356 4.93678 4.96283 5.02117 5.10161 5.13348 5.17761 5.20752 5.28490 5.32189 5.36884 5.41748 5.44526 5.45255 5.52124 5.55070 5.59458 5.64369 5.69520 5.77564 5.84246 5.85477 5.95615 6.09551 6.17065 6.25458 6.34407 6.86810 7.06536 7.12781 7.23307 7.39352 7.47327 7.58323 7.89905 8.13036 8.19956 8.30592 8.88224 9.04928 9.54700 11.01012 Molecular weight = 350.21amu Principal moments of inertia in cm(-1) A = 0.007277 B = 0.003834 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3847.031989 B = 7300.536265 C =10305.633097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.625 5.625 3 C 0.079 3.921 4 C 0.523 3.477 5 O -0.537 6.537 6 C -0.099 4.099 7 H 0.103 0.897 8 C -0.107 4.107 9 C -0.112 4.112 10 C 0.053 3.947 11 N -0.518 5.518 12 C 0.034 3.966 13 C 0.508 3.492 14 O -0.514 6.514 15 N -0.599 5.599 16 C 0.246 3.754 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.117 3.883 26 C -0.050 4.050 27 C 0.217 3.783 28 N -0.447 5.447 29 C 0.071 3.929 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.034 0.966 45 H 0.047 0.953 46 H 0.263 0.737 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.106 0.894 50 H 0.117 0.883 51 H 0.097 0.903 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 8.385 -18.677 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.359 5.359 3 C -0.064 4.064 4 C 0.311 3.689 5 O -0.413 6.413 6 C -0.121 4.121 7 H 0.121 0.879 8 C -0.145 4.145 9 C -0.149 4.149 10 C -0.075 4.075 11 N -0.243 5.243 12 C -0.097 4.097 13 C 0.294 3.706 14 O -0.388 6.388 15 N -0.332 5.332 16 C 0.128 3.872 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.010 4.010 26 C -0.092 4.092 27 C -0.101 4.101 28 N -0.124 5.124 29 C -0.057 4.057 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.124 0.876 50 H 0.135 0.865 51 H 0.115 0.885 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.475 7.434 -18.542 20.277 hybrid contribution -1.450 -0.625 0.122 1.584 sum 2.025 6.809 -18.421 19.743 Atomic orbital electron populations 1.21667 0.79352 1.02874 1.02039 1.47751 1.07039 1.06567 1.74584 1.21841 0.97443 0.85005 1.02135 1.20684 0.90096 0.82995 0.75168 1.90686 1.70534 1.31227 1.48901 1.21296 0.90436 1.02283 0.98077 0.87916 1.21507 0.96002 1.02344 0.94669 1.21545 0.94847 0.99144 0.99407 1.22145 0.99422 0.97180 0.88785 1.61497 1.07361 1.45040 1.10372 1.22105 1.01528 0.93350 0.92696 1.20166 0.79853 0.84471 0.86160 1.90669 1.41662 1.24502 1.81995 1.48231 1.58855 1.14464 1.11675 1.19325 0.94953 0.98421 0.74549 1.21461 0.98389 1.39944 0.96726 0.92404 1.24895 0.98017 0.95109 0.95865 1.69928 1.37159 1.43711 1.02478 0.86504 0.84788 0.78432 0.78113 1.19762 1.20982 1.20901 1.21304 0.88750 0.88718 1.02190 1.19912 0.96400 0.87419 1.05451 1.29110 0.93352 0.94725 0.92876 1.81189 1.09708 1.11827 1.09666 1.21960 0.86883 0.95234 1.01634 0.92595 0.91422 0.90562 0.92217 0.90526 0.91154 0.91558 0.91611 0.90600 0.91155 0.90469 0.94855 0.92358 0.88246 0.94800 0.93540 0.92780 0.88802 0.90805 0.87572 0.86453 0.88458 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.43 59.85 0.62 1.46 16 2 N -0.62 -7.19 3.27 -189.51 -0.62 -7.81 16 3 C 0.08 0.61 9.70 59.84 0.58 1.19 16 4 C 0.52 7.57 6.67 -10.98 -0.07 7.49 16 5 O -0.54 -9.80 15.80 5.56 0.09 -9.71 16 6 C -0.10 -1.26 2.15 -91.69 -0.20 -1.46 16 7 H 0.10 1.26 6.26 -51.93 -0.33 0.94 16 8 C -0.11 -1.05 5.27 -26.61 -0.14 -1.19 16 9 C -0.11 -0.95 6.09 -26.65 -0.16 -1.12 16 10 C 0.05 0.53 5.46 -3.83 -0.02 0.51 16 11 N -0.52 -7.01 4.34 -236.12 -1.02 -8.03 16 12 C 0.03 0.46 4.19 -4.98 -0.02 0.44 16 13 C 0.51 9.33 7.20 -10.99 -0.08 9.25 16 14 O -0.51 -11.74 14.34 5.56 0.08 -11.66 16 15 N -0.60 -10.94 2.46 -175.06 -0.43 -11.37 16 16 C 0.25 5.83 5.16 -5.19 -0.03 5.80 16 17 C -0.53 -14.18 9.39 -34.44 -0.32 -14.50 16 18 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.12 1.56 5.19 -4.04 -0.02 1.54 16 26 C -0.05 -0.52 6.03 -29.52 -0.18 -0.69 16 27 C 0.22 2.60 15.43 -20.78 -0.32 2.28 16 28 N -0.45 -6.55 18.53 42.14 0.78 -5.77 16 29 C 0.07 1.10 4.07 -3.83 -0.02 1.08 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.47 7.96 -51.93 -0.41 0.05 16 32 H 0.08 0.87 7.36 -51.93 -0.38 0.48 16 33 H 0.06 0.37 7.69 -51.93 -0.40 -0.03 16 34 H 0.08 0.44 7.83 -51.93 -0.41 0.03 16 35 H 0.07 0.58 6.97 -51.93 -0.36 0.22 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.53 7.69 -51.93 -0.40 0.13 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.65 8.00 -51.93 -0.42 0.24 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.73 7.02 -51.93 -0.36 0.37 16 43 H 0.10 1.02 7.25 -51.93 -0.38 0.64 16 44 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 45 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 48 H 0.07 0.84 6.26 -51.93 -0.33 0.51 16 49 H 0.11 0.86 7.42 -51.93 -0.39 0.48 16 50 H 0.12 1.20 8.14 -51.92 -0.42 0.78 16 51 H 0.10 1.91 6.10 -51.93 -0.32 1.59 16 52 H 0.04 0.66 7.83 -51.93 -0.41 0.26 16 LS Contribution 420.96 15.07 6.34 6.34 Total: -1.00 -35.93 420.96 -8.12 -44.05 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.58 Total: -1.52 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -0.47 Total: 13.73 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.56 Total: -57.86 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.17 Total: -21.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.93 -8.12 -44.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068970538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.223 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds