Wall clock time and date at job start Tue Mar 31 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00196 * 2 1 4 4 C 1.34780 * 119.99466 * 180.02562 * 2 1 3 5 5 O 1.21281 * 120.00289 * 6.45322 * 4 2 1 6 6 C 1.50696 * 119.99760 * 186.44590 * 4 2 1 7 7 H 1.08996 * 109.54229 * 306.98548 * 6 4 2 8 8 C 1.53120 * 109.50335 * 67.08020 * 6 4 2 9 9 C 1.53123 * 109.21468 * 177.62319 * 8 6 4 10 10 C 1.53031 * 109.27963 * 302.31789 * 9 8 6 11 11 N 1.46851 * 109.52562 * 59.17899 * 10 9 8 12 12 C 1.46899 * 111.00214 * 174.15924 * 11 10 9 13 13 C 1.50704 * 109.46904 * 66.04741 * 12 11 10 14 14 O 1.21280 * 120.00267 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99665 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00102 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47307 * 89.99517 * 16 15 13 18 18 H 1.07999 * 119.99639 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00519 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00385 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99551 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47090 * 89.99636 * 21 19 17 23 23 H 1.48506 * 109.46886 * 209.99269 * 21 19 17 24 24 H 1.48495 * 109.47432 * 329.99537 * 21 19 17 25 25 C 1.46501 * 120.00183 * 0.02562 * 15 13 12 26 26 C 1.52999 * 109.47525 * 90.00082 * 25 15 13 27 27 C 1.47195 * 109.47120 * 179.97438 * 26 25 15 28 28 N 9.06045 * 151.46075 * 214.60072 * 6 1 2 29 29 C 1.46846 * 111.19405 * 298.25716 * 11 10 9 30 30 H 1.09005 * 109.47328 * 270.00042 * 1 2 3 31 31 H 1.09006 * 109.47281 * 29.99436 * 1 2 3 32 32 H 1.08998 * 109.47449 * 149.99716 * 1 2 3 33 33 H 1.08995 * 109.47394 * 264.48865 * 3 2 1 34 34 H 1.08993 * 109.47119 * 24.49322 * 3 2 1 35 35 H 1.09005 * 109.46711 * 144.49157 * 3 2 1 36 36 H 1.09007 * 109.51959 * 57.69023 * 8 6 4 37 37 H 1.08995 * 109.52825 * 297.56768 * 8 6 4 38 38 H 1.09001 * 109.49916 * 62.25634 * 9 8 6 39 39 H 1.08997 * 109.49953 * 182.33609 * 9 8 6 40 40 H 1.08998 * 109.46081 * 179.19097 * 10 9 8 41 41 H 1.09004 * 109.46319 * 299.16173 * 10 9 8 42 42 H 1.08996 * 109.47241 * 186.04575 * 12 11 10 43 43 H 1.08994 * 109.46949 * 306.04584 * 12 11 10 44 44 H 1.09002 * 109.47651 * 210.00089 * 16 15 13 45 45 H 1.09003 * 109.46678 * 329.99928 * 16 15 13 46 46 H 0.97004 * 119.99562 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.47015 * 210.00078 * 25 15 13 48 48 H 1.08998 * 109.46927 * 329.99632 * 25 15 13 49 49 H 1.09002 * 109.46971 * 300.00024 * 26 25 15 50 50 H 1.08998 * 109.47385 * 59.99831 * 26 25 15 51 51 H 1.09001 * 109.45989 * 181.75239 * 29 11 10 52 52 H 1.08994 * 109.46638 * 301.72447 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5381 -2.2142 -0.1190 6 6 3.6386 -1.1716 0.1460 7 1 4.0796 -0.5092 -0.5989 8 6 4.0166 -0.6870 1.5485 9 6 5.5379 -0.7503 1.7105 10 6 6.0133 -2.1837 1.4630 11 7 5.6295 -2.6010 0.1083 12 6 6.1891 -3.9203 -0.2145 13 6 5.5608 -4.9634 0.6735 14 8 4.7291 -4.6395 1.4946 15 7 5.9239 -6.2559 0.5557 16 6 5.3135 -7.2699 1.4192 17 6 4.0775 -7.8182 0.7540 18 1 3.7770 -7.4488 -0.2153 19 6 3.3310 -8.7924 1.3822 20 7 2.2526 -9.2713 0.8014 21 14 3.8514 -9.4320 3.0584 22 1 3.2166 -8.6107 4.1204 23 1 3.4224 -10.8463 3.2035 24 1 5.3286 -9.3473 3.1838 25 6 6.9297 -6.6469 -0.4351 26 6 8.3214 -6.5795 0.1969 27 6 9.3319 -6.9730 -0.7985 28 7 10.1098 -7.2764 -1.5704 29 6 4.1703 -2.5937 -0.0561 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8901 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 2.4647 1.5340 -1.0228 34 1 1.5694 2.0509 0.4260 35 1 3.1037 1.1650 0.5969 36 1 3.5440 -1.3262 2.2943 37 1 3.6784 0.3404 1.6824 38 1 6.0087 -0.0813 0.9900 39 1 5.8092 -0.4457 2.7212 40 1 7.0976 -2.2291 1.5634 41 1 5.5528 -2.8501 2.1924 42 1 5.9809 -4.1580 -1.2576 43 1 7.2670 -3.9072 -0.0530 44 1 6.0244 -8.0787 1.5884 45 1 5.0426 -6.8187 2.3737 46 1 1.7273 -9.9564 1.2436 47 1 6.7322 -7.6648 -0.7712 48 1 6.8841 -5.9679 -1.2866 49 1 8.5190 -5.5616 0.5330 50 1 8.3671 -7.2585 1.0484 51 1 3.9162 -2.9369 -1.0590 52 1 3.7185 -3.2581 0.6803 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068970541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:41 Heat of formation + Delta-G solvation = -19.157417 kcal Electronic energy + Delta-G solvation = -32480.351784 eV Core-core repulsion = 28287.936887 eV Total energy + Delta-G solvation = -4192.414897 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 350.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.60347 -39.65076 -37.77230 -36.80808 -35.64065 -35.32328 -33.58903 -32.70840 -31.09713 -31.01953 -28.89992 -28.14132 -26.71588 -26.39683 -24.08789 -23.52699 -23.25272 -21.94610 -20.16280 -19.09353 -18.59939 -17.74496 -17.04495 -16.84638 -16.70706 -16.32771 -15.86342 -15.72100 -15.19887 -15.00881 -14.74196 -14.59821 -14.24617 -14.10016 -13.87189 -13.70887 -13.36341 -13.11934 -12.89912 -12.85408 -12.69538 -12.59744 -12.50856 -12.46437 -12.37054 -12.13517 -12.01176 -11.91347 -11.62370 -11.52478 -11.21874 -11.06086 -10.88287 -10.76625 -10.58153 -10.52432 -10.33152 -10.18290 -9.83754 -9.59380 -9.52193 -8.76604 -8.59988 -7.90456 -7.83697 -6.08814 -4.08494 2.66371 2.66563 2.75469 2.90130 3.15190 3.26969 3.32074 3.34876 3.55608 3.97488 4.13137 4.37749 4.45683 4.68687 4.81896 4.84776 4.89622 4.99257 5.01602 5.05638 5.07155 5.14659 5.23959 5.26392 5.28884 5.34719 5.41672 5.44339 5.53007 5.57059 5.61140 5.67977 5.73344 5.73779 5.85354 5.96491 6.01426 6.03286 6.11987 6.31992 6.36484 6.56602 6.58873 6.85607 7.05907 7.13476 7.20839 7.26399 7.52264 7.57976 8.07234 8.20696 8.44204 8.80729 8.95896 9.50314 11.04538 Molecular weight = 350.21amu Principal moments of inertia in cm(-1) A = 0.008603 B = 0.003494 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.803734 B = 8011.802497 C =10217.700256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.628 5.628 3 C 0.068 3.932 4 C 0.516 3.484 5 O -0.522 6.522 6 C -0.096 4.096 7 H 0.096 0.904 8 C -0.116 4.116 9 C -0.109 4.109 10 C 0.037 3.963 11 N -0.515 5.515 12 C 0.033 3.967 13 C 0.477 3.523 14 O -0.526 6.526 15 N -0.590 5.590 16 C 0.214 3.786 17 C -0.531 4.531 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.894 5.894 21 Si 0.875 3.125 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.116 3.884 26 C -0.049 4.049 27 C 0.216 3.784 28 N -0.442 5.442 29 C 0.051 3.949 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.030 0.970 45 H 0.038 0.962 46 H 0.265 0.735 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.114 0.886 51 H 0.071 0.929 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 21.949 0.411 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.364 5.364 3 C -0.075 4.075 4 C 0.303 3.697 5 O -0.396 6.396 6 C -0.118 4.118 7 H 0.114 0.886 8 C -0.154 4.154 9 C -0.147 4.147 10 C -0.091 4.091 11 N -0.238 5.238 12 C -0.099 4.099 13 C 0.264 3.736 14 O -0.403 6.403 15 N -0.322 5.322 16 C 0.094 3.906 17 C -0.569 4.569 18 H 0.093 0.907 19 C -0.129 4.129 20 N -0.532 5.532 21 Si 0.702 3.298 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.010 4.010 26 C -0.091 4.091 27 C -0.103 4.103 28 N -0.119 5.119 29 C -0.077 4.077 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.125 0.875 50 H 0.132 0.868 51 H 0.090 0.910 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.512 21.301 -0.666 22.596 hybrid contribution -0.595 -0.862 1.580 1.895 sum 6.917 20.439 0.914 21.597 Atomic orbital electron populations 1.21625 0.79454 1.03079 1.01707 1.47729 1.06905 1.06395 1.75366 1.22067 0.98002 0.85297 1.02097 1.20767 0.90144 0.83025 0.75748 1.90783 1.70272 1.31074 1.47473 1.21258 0.90914 1.00195 0.99408 0.88609 1.21727 0.97147 1.01115 0.95385 1.21512 0.94697 0.97021 1.01430 1.22292 0.99988 0.96297 0.90537 1.62379 1.11659 1.23375 1.26370 1.22357 1.00151 0.87176 1.00225 1.21758 0.83072 0.83765 0.85036 1.90600 1.32571 1.79879 1.37268 1.48053 1.39262 1.07748 1.37126 1.19703 0.93969 0.86054 0.90884 1.21291 1.08018 1.21109 1.06483 0.90680 1.24856 0.94570 0.96075 0.97397 1.69898 1.15942 1.28799 1.38604 0.86883 0.79368 0.78393 0.85177 1.19995 1.21126 1.19048 1.21342 0.84642 1.03905 0.91144 1.19875 0.90307 1.04225 0.94681 1.29084 0.93965 0.93117 0.94089 1.81268 1.10965 1.09329 1.10364 1.22240 0.86890 0.94752 1.03827 0.92913 0.91546 0.90343 0.92679 0.91109 0.89888 0.91163 0.91062 0.91322 0.91331 0.91308 0.91635 0.87918 0.88242 0.95170 0.94447 0.92545 0.88537 0.90151 0.87510 0.86754 0.91004 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.46 59.85 0.63 1.45 16 2 N -0.63 -6.87 3.27 -189.52 -0.62 -7.49 16 3 C 0.07 0.45 9.91 59.85 0.59 1.05 16 4 C 0.52 7.55 6.96 -10.99 -0.08 7.47 16 5 O -0.52 -10.36 15.53 5.56 0.09 -10.27 16 6 C -0.10 -1.19 1.88 -91.62 -0.17 -1.37 16 7 H 0.10 1.00 7.76 -51.93 -0.40 0.60 16 8 C -0.12 -1.23 4.97 -26.61 -0.13 -1.36 16 9 C -0.11 -1.03 6.09 -26.65 -0.16 -1.19 16 10 C 0.04 0.44 5.09 -3.83 -0.02 0.42 16 11 N -0.52 -6.71 4.86 -236.03 -1.15 -7.86 16 12 C 0.03 0.41 4.41 -4.97 -0.02 0.39 16 13 C 0.48 8.33 7.09 -10.99 -0.08 8.26 16 14 O -0.53 -11.40 11.20 5.56 0.06 -11.33 16 15 N -0.59 -10.31 2.46 -175.06 -0.43 -10.74 16 16 C 0.21 4.75 4.23 -5.19 -0.02 4.73 16 17 C -0.53 -14.65 9.94 -34.44 -0.34 -15.00 16 18 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.89 -27.49 13.96 55.43 0.77 -26.71 16 21 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 25 C 0.12 1.47 5.17 -4.04 -0.02 1.45 16 26 C -0.05 -0.46 6.03 -29.52 -0.18 -0.64 16 27 C 0.22 2.44 15.44 -20.73 -0.32 2.12 16 28 N -0.44 -6.26 18.54 42.20 0.78 -5.48 16 29 C 0.05 0.79 3.60 -3.76 -0.01 0.78 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.08 0.94 7.34 -51.93 -0.38 0.56 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.34 8.03 -51.93 -0.42 -0.08 16 35 H 0.08 0.50 4.18 -51.93 -0.22 0.28 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.57 5.30 -51.93 -0.28 0.30 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 41 H 0.07 1.00 6.00 -51.93 -0.31 0.69 16 42 H 0.10 1.22 7.40 -51.93 -0.38 0.84 16 43 H 0.10 0.93 7.11 -51.93 -0.37 0.56 16 44 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 45 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.10 1.34 8.07 -51.93 -0.42 0.93 16 48 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 49 H 0.11 0.76 7.22 -51.93 -0.38 0.38 16 50 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 52 H 0.09 1.93 5.22 -51.93 -0.27 1.66 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -37.64 408.30 -7.72 -45.35 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.27 Total: 1.45 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.44 Total: 10.57 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.64 Total: -58.28 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.15 Total: -21.61 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.64 -7.72 -45.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068970541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.196 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds