Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99741 * 2 1 4 4 C 1.53004 * 109.46662 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47225 * 65.00150 * 4 3 2 6 6 C 1.46498 * 120.00085 * 275.00054 * 5 4 3 7 7 C 1.50706 * 109.46707 * 274.99589 * 6 5 4 8 8 H 1.07992 * 120.00403 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99824 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00111 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00212 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47397 * 89.99452 * 11 9 7 13 13 H 1.48493 * 109.47436 * 210.00105 * 11 9 7 14 14 H 1.48504 * 109.47245 * 329.99898 * 11 9 7 15 15 S 1.65608 * 120.00014 * 94.99630 * 5 4 3 16 16 O 1.42099 * 106.40144 * 336.46091 * 15 5 4 17 17 O 1.42101 * 106.39861 * 203.53896 * 15 5 4 18 18 C 1.76201 * 107.21614 * 90.00294 * 15 5 4 19 19 C 1.38237 * 120.00615 * 115.27934 * 18 15 5 20 20 C 1.38222 * 120.04921 * 180.24707 * 19 18 15 21 21 C 1.38262 * 120.06007 * 359.75028 * 20 19 18 22 22 C 1.38287 * 120.00807 * 359.97058 * 21 20 19 23 23 Cl 1.73596 * 120.01878 * 180.02562 * 22 21 20 24 24 C 1.38403 * 120.00515 * 294.99860 * 18 15 5 25 25 F 1.35104 * 120.02975 * 0.02562 * 24 18 15 26 26 H 1.09005 * 109.47103 * 299.99784 * 1 2 3 27 27 H 1.09001 * 109.47528 * 59.99976 * 1 2 3 28 28 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47418 * 60.00356 * 3 2 1 30 30 H 1.09004 * 109.47178 * 299.99776 * 3 2 1 31 31 H 1.08996 * 109.47253 * 304.99729 * 4 3 2 32 32 H 1.09003 * 109.46891 * 184.99773 * 4 3 2 33 33 H 1.08997 * 109.46952 * 34.99463 * 6 5 4 34 34 H 1.08994 * 109.47587 * 155.00031 * 6 5 4 35 35 H 0.96995 * 119.99950 * 180.02562 * 10 9 7 36 36 H 1.07996 * 119.97705 * 359.97438 * 19 18 15 37 37 H 1.07993 * 119.97328 * 179.76147 * 20 19 18 38 38 H 1.07993 * 119.99637 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0003 -0.8950 -1.3782 7 6 5.2994 -1.4245 -0.8276 8 1 6.0330 -0.7424 -0.4242 9 6 5.5509 -2.7802 -0.8380 10 7 6.6843 -3.2424 -0.3570 11 14 4.2817 -3.9603 -1.5351 12 1 4.5308 -4.1547 -2.9861 13 1 4.3836 -5.2664 -0.8360 14 1 2.9216 -3.3979 -1.3374 15 16 4.4453 1.5131 -2.5263 16 8 3.8177 2.7742 -2.3401 17 8 4.2756 0.7257 -3.6970 18 6 6.1774 1.7898 -2.3596 19 6 7.0514 1.2929 -3.3084 20 6 8.4108 1.5050 -3.1758 21 6 8.8983 2.2190 -2.0968 22 6 8.0257 2.7221 -1.1492 23 17 8.6375 3.6191 0.2053 24 6 6.6627 2.5096 -1.2817 25 9 5.8089 3.0001 -0.3566 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1765 0.0889 33 1 3.1678 -1.3218 -0.8190 34 1 3.9117 -1.1709 -2.4289 35 1 6.8614 -4.1960 -0.3647 36 1 6.6721 0.7347 -4.1516 37 1 9.0927 1.1130 -3.9157 38 1 9.9605 2.3845 -1.9944 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069326148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = -129.110694 kcal Electronic energy + Delta-G solvation = -28194.055603 eV Core-core repulsion = 23912.054888 eV Total energy + Delta-G solvation = -4282.000715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 351.054 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.21682 -39.03360 -37.84538 -36.84568 -36.58747 -35.55660 -35.44449 -32.51907 -31.29854 -30.51477 -29.80846 -27.22906 -25.80279 -23.73190 -22.92718 -22.62145 -21.62948 -18.94457 -18.09951 -17.32795 -17.17287 -16.77553 -16.66290 -16.04900 -15.85301 -15.62690 -15.29111 -15.09290 -14.66066 -14.59282 -14.18413 -13.77913 -13.60801 -13.13718 -12.74521 -12.55506 -12.45473 -12.25126 -12.08666 -11.93608 -11.86391 -11.72239 -11.64111 -11.40910 -11.28961 -11.21116 -10.90929 -10.72454 -10.57300 -10.32847 -10.15674 -9.58411 -9.39917 -9.36585 -8.75590 -8.59872 -8.14095 -6.11776 -4.11690 0.55327 0.86676 0.94159 1.91002 3.13168 3.30648 3.36714 3.43378 3.45201 3.84286 4.05423 4.11260 4.40248 4.51726 4.70091 4.87808 5.07316 5.21639 5.30538 5.34303 5.36639 5.48834 5.58953 5.63324 5.64764 5.68670 5.78565 5.84489 5.90357 6.08829 6.22634 6.42725 6.53949 6.99209 7.18366 7.32573 7.49509 7.60273 8.43780 8.90255 9.49099 11.00676 Molecular weight = 351.05amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.005548 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.300832 B = 5045.385494 C = 6261.680971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.044 3.956 4 C 0.124 3.876 5 N -0.962 5.962 6 C 0.212 3.788 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.078 3.922 10 N -0.895 5.895 11 Si 0.866 3.134 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.258 1.258 15 S 2.688 3.312 16 O -0.964 6.964 17 O -0.950 6.950 18 C -0.686 4.686 19 C 0.020 3.980 20 C -0.135 4.135 21 C -0.036 4.036 22 C -0.093 4.093 23 Cl -0.050 7.050 24 C 0.207 3.793 25 F -0.113 7.113 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.264 0.736 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 11.605 -2.046 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.034 4.034 4 C -0.003 4.003 5 N -0.801 5.801 6 C 0.089 3.911 7 C -0.580 4.580 8 H 0.095 0.905 9 C -0.126 4.126 10 N -0.533 5.533 11 Si 0.693 3.307 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.182 1.182 15 S 2.774 3.226 16 O -0.954 6.954 17 O -0.940 6.940 18 C -0.770 4.770 19 C 0.001 3.999 20 C -0.154 4.154 21 C -0.055 4.055 22 C -0.121 4.121 23 Cl -0.021 7.021 24 C 0.185 3.815 25 F -0.091 7.091 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.046 11.682 -2.496 11.992 hybrid contribution 0.040 -0.517 0.486 0.710 sum -1.007 11.166 -2.011 11.390 Atomic orbital electron populations 1.22717 0.82215 1.02406 0.99386 1.88053 1.18606 1.27410 1.95235 1.23112 0.94980 0.85023 1.00335 1.21408 0.91590 0.98963 0.88309 1.57067 1.77376 1.18208 1.27458 1.19778 0.99182 0.73729 0.98379 1.21442 1.01794 0.93221 1.41539 0.90541 1.24808 0.95143 0.98046 0.94557 1.69899 1.23582 1.14045 1.45777 0.86977 0.83208 0.80818 0.79723 1.19840 1.21151 1.18219 1.02230 0.73288 0.73127 0.73954 1.93561 1.73215 1.42251 1.86364 1.93547 1.84803 1.69882 1.45814 1.31349 1.30001 1.12486 1.03191 1.20977 0.92724 0.90528 0.95696 1.21296 0.95700 0.99723 0.98659 1.21199 0.99830 0.93098 0.91388 1.20900 0.91976 1.04649 0.94589 1.98377 1.87280 1.73174 1.43247 1.16614 0.86048 0.92832 0.85967 1.91536 1.69056 1.84945 1.63526 0.94537 0.94470 0.89943 0.92597 0.92976 0.88541 0.88889 0.92093 0.94051 0.92594 0.82460 0.83510 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.48 9.02 -35.23 -0.32 -6.80 16 3 C 0.04 0.70 6.28 37.16 0.23 0.93 16 4 C 0.12 2.18 5.67 -4.04 -0.02 2.16 16 5 N -0.96 -19.66 2.75 -115.67 -0.32 -19.98 16 6 C 0.21 4.98 4.34 -5.19 -0.02 4.96 16 7 C -0.54 -14.45 9.94 -34.44 -0.34 -14.79 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 11 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 15 S 2.69 52.59 5.29 -107.50 -0.57 52.02 16 16 O -0.96 -18.92 16.40 -57.17 -0.94 -19.86 16 17 O -0.95 -20.13 15.52 -57.17 -0.89 -21.02 16 18 C -0.69 -12.34 5.91 -39.52 -0.23 -12.57 16 19 C 0.02 0.32 9.55 -39.59 -0.38 -0.06 16 20 C -0.13 -1.75 10.04 -39.58 -0.40 -2.14 16 21 C -0.04 -0.47 9.83 -39.55 -0.39 -0.86 16 22 C -0.09 -1.42 6.33 -39.44 -0.25 -1.66 16 23 Cl -0.05 -0.68 28.62 -51.86 -1.48 -2.16 16 24 C 0.21 3.59 7.19 -39.39 -0.28 3.31 16 25 F -0.11 -1.94 13.31 2.25 0.03 -1.91 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.75 8.11 -51.93 -0.42 1.33 16 32 H 0.09 1.50 5.07 -51.93 -0.26 1.24 16 33 H 0.06 1.45 5.66 -51.93 -0.29 1.15 16 34 H 0.04 0.99 6.34 -51.93 -0.33 0.66 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.16 2.30 7.33 -52.49 -0.38 1.92 16 37 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -32.44 350.36 -8.41 -40.85 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.24 Total: 0.03 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.07 Total: -17.18 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.45 Total: -45.46 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -2.14 Total: -47.68 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.03 Total: -1.91 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.57 Total: 52.02 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.44 -8.41 -40.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069326148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.264 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds