Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99632 * 2 1 4 4 H 1.48498 * 109.47053 * 269.99804 * 3 2 1 5 5 H 1.48497 * 109.47686 * 30.00191 * 3 2 1 6 6 H 1.48508 * 109.46926 * 150.00462 * 3 2 1 7 7 C 1.37871 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00294 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00143 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47156 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00304 * 96.78413 * 10 9 7 12 12 C 1.50694 * 109.47541 * 89.99690 * 11 10 9 13 13 C 1.38678 * 120.42033 * 270.25721 * 12 11 10 14 14 C 1.38626 * 118.42035 * 180.24312 * 13 12 11 15 15 C 1.38227 * 119.15907 * 359.74701 * 14 13 12 16 16 N 1.31845 * 120.76808 * 359.97438 * 15 14 13 17 17 C 1.31888 * 121.72613 * 0.02562 * 16 15 14 18 18 C 1.34779 * 119.99715 * 276.77683 * 10 9 7 19 19 O 1.21721 * 120.00065 * 185.39311 * 18 10 9 20 20 C 1.46246 * 120.00036 * 5.40002 * 18 10 9 21 21 C 1.35594 * 120.14381 * 278.47899 * 20 18 10 22 22 C 1.47113 * 117.86613 * 180.88527 * 21 20 18 23 23 C 1.39440 * 121.48098 * 196.12584 * 22 21 20 24 24 C 1.37961 * 119.50506 * 179.97438 * 23 22 21 25 25 C 1.38570 * 120.35335 * 0.02772 * 24 23 22 26 26 C 1.38250 * 120.63491 * 0.02562 * 25 24 23 27 27 C 1.38350 * 119.85327 * 359.97438 * 26 25 24 28 28 O 1.35570 * 121.30997 * 179.97438 * 27 26 25 29 29 C 1.43081 * 117.16232 * 145.89770 * 28 27 26 30 30 H 0.97003 * 119.99711 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47124 * 60.00155 * 9 7 2 32 32 H 1.08999 * 109.47328 * 300.00018 * 9 7 2 33 33 H 1.08996 * 109.46778 * 329.99569 * 11 10 9 34 34 H 1.09002 * 109.47339 * 210.00066 * 11 10 9 35 35 H 1.08000 * 120.78551 * 359.96551 * 13 12 11 36 36 H 1.08000 * 120.42046 * 179.72770 * 14 13 12 37 37 H 1.08003 * 119.61015 * 180.02562 * 15 14 13 38 38 H 1.07995 * 119.61756 * 179.97438 * 17 16 15 39 39 H 1.07994 * 121.06238 * 0.86690 * 21 20 18 40 40 H 1.07998 * 120.24715 * 359.96370 * 23 22 21 41 41 H 1.08007 * 119.82026 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.68165 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.07266 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.50910 * 288.33805 * 29 28 27 45 45 H 1.09002 * 109.25993 * 168.85919 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.3849 -3.2162 -1.2597 12 6 5.8470 -2.9657 -1.5246 13 6 6.2498 -1.8463 -2.2374 14 6 7.6050 -1.6592 -2.4615 15 6 8.5037 -2.5852 -1.9659 16 7 8.0850 -3.6353 -1.2874 17 6 6.8038 -3.8453 -1.0552 18 6 4.0951 -3.2562 1.1593 19 8 4.5920 -4.3672 1.1734 20 6 3.6012 -2.6602 2.4001 21 6 4.3670 -1.7719 3.0808 22 6 3.8292 -1.2184 4.3332 23 6 4.3758 -0.0770 4.9188 24 6 3.8389 0.4073 6.0937 25 6 2.7650 -0.2342 6.6897 26 6 2.2159 -1.3672 6.1186 27 6 2.7405 -1.8679 4.9405 28 8 2.2255 -2.9770 4.3552 29 6 2.2374 -3.0264 2.9253 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6796 0.8895 32 1 3.8746 -0.6808 -0.8905 33 1 3.7917 -2.8012 -2.0746 34 1 4.2068 -4.2893 -1.1907 35 1 5.5246 -1.1396 -2.6129 36 1 7.9541 -0.8010 -3.0164 37 1 9.5612 -2.4464 -2.1359 38 1 6.4987 -4.7171 -0.4958 39 1 5.3405 -1.4805 2.7153 40 1 5.2132 0.4240 4.4561 41 1 4.2580 1.2913 6.5515 42 1 2.3535 0.1541 7.6096 43 1 1.3786 -1.8597 6.5907 44 1 1.4999 -2.3274 2.5308 45 1 1.9843 -4.0350 2.5982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069351597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = 14.786148 kcal Electronic energy + Delta-G solvation = -30749.067001 eV Core-core repulsion = 26697.307081 eV Total energy + Delta-G solvation = -4051.759920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.58929 -40.12516 -39.02443 -37.19491 -35.48142 -34.04722 -32.98736 -32.24107 -31.53883 -30.34055 -30.21585 -28.26268 -26.46041 -25.67161 -23.88174 -23.48601 -22.54174 -22.43763 -21.94008 -20.01513 -18.04125 -17.72814 -17.19611 -16.93791 -16.69467 -16.26464 -16.03546 -15.65982 -15.51122 -15.18632 -14.63993 -14.43714 -14.36393 -13.94965 -13.68571 -13.46495 -13.30942 -13.13753 -12.96568 -12.82509 -12.63994 -12.43614 -12.18770 -12.01467 -11.81170 -11.59960 -11.38647 -11.15331 -11.07618 -10.78699 -10.50326 -10.42054 -9.93022 -9.81447 -9.70937 -9.46672 -9.35743 -8.90658 -8.81788 -8.50325 -8.04084 -7.60690 -6.33194 -4.35361 0.88934 1.16562 1.36794 1.50564 2.37056 2.92971 3.07932 3.16720 3.18972 3.45649 3.71593 4.00844 4.06153 4.16661 4.53919 4.78590 4.82965 4.89433 4.96422 4.97979 5.03697 5.06466 5.09644 5.15360 5.23848 5.37147 5.45068 5.51060 5.62630 5.72899 5.85776 5.93968 5.98087 6.01779 6.01989 6.15013 6.21049 6.23993 6.32896 6.41177 6.49451 6.54675 6.59701 6.71006 6.80442 6.91586 7.07203 7.30168 7.58672 7.84631 8.06220 8.22377 8.57851 8.70578 9.25853 10.78651 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004295 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.931263 B = 6518.118506 C = 7759.262497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.082 3.918 3 Si 0.864 3.136 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.208 3.792 10 N -0.578 5.578 11 C 0.160 3.840 12 C -0.149 4.149 13 C -0.062 4.062 14 C -0.179 4.179 15 C 0.091 3.909 16 N -0.490 5.490 17 C 0.120 3.880 18 C 0.568 3.432 19 O -0.554 6.554 20 C -0.149 4.149 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.073 4.073 24 C -0.153 4.153 25 C -0.088 4.088 26 C -0.146 4.146 27 C 0.137 3.863 28 O -0.311 6.311 29 C 0.116 3.884 30 H 0.268 0.732 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.103 0.897 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 0.773 3.541 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.123 4.123 3 Si 0.691 3.309 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.099 0.901 9 C 0.087 3.913 10 N -0.307 5.307 11 C 0.036 3.964 12 C -0.152 4.152 13 C -0.089 4.089 14 C -0.199 4.199 15 C -0.066 4.066 16 N -0.199 5.199 17 C -0.037 4.037 18 C 0.356 3.644 19 O -0.434 6.434 20 C -0.152 4.152 21 C -0.097 4.097 22 C -0.119 4.119 23 C -0.091 4.091 24 C -0.171 4.171 25 C -0.106 4.106 26 C -0.164 4.164 27 C 0.092 3.908 28 O -0.225 6.225 29 C 0.042 3.958 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.178 0.822 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.120 0.880 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.778 -0.443 3.921 10.544 hybrid contribution -0.163 2.009 -0.705 2.136 sum 9.615 1.567 3.217 10.259 Atomic orbital electron populations 1.69869 1.06109 1.27329 1.48907 1.24808 0.94671 0.98719 0.94074 0.87019 0.80719 0.84319 0.78858 1.19906 1.20702 1.18807 1.21282 0.88654 0.95028 1.52992 0.90141 1.19894 0.96203 0.77483 0.97749 1.47989 1.61995 1.15900 1.04833 1.20231 0.89178 0.99697 0.87267 1.21426 0.98376 0.96262 0.99143 1.21614 0.96144 0.95942 0.95162 1.22103 0.94089 1.01181 1.02558 1.22733 1.00042 0.90108 0.93735 1.67734 1.17961 1.20688 1.13508 1.22905 0.87445 0.98582 0.94788 1.17845 0.78100 0.84757 0.83706 1.90767 1.45941 1.20021 1.86628 1.22231 0.98273 0.98433 0.96247 1.21756 0.99385 0.94924 0.93667 1.19076 0.97282 0.98375 0.97198 1.21015 0.98966 0.94307 0.94851 1.20984 0.98315 1.01131 0.96652 1.21013 0.95742 0.94553 0.99338 1.20523 1.01707 0.97447 0.96739 1.19100 0.91135 0.86922 0.93671 1.85996 1.78026 1.36727 1.21789 1.21726 0.93236 1.04458 0.76389 0.92232 0.94728 0.95168 0.88737 0.89209 0.84687 0.85040 0.83194 0.82194 0.85272 0.85600 0.85897 0.85568 0.85044 0.87959 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 13.96 55.43 0.77 -23.60 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.86 19.13 27.47 -169.99 -4.67 14.46 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 7 C -0.54 -13.12 9.18 -34.44 -0.32 -13.44 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.21 4.28 4.00 -5.19 -0.02 4.26 16 10 N -0.58 -10.91 2.46 -178.15 -0.44 -11.35 16 11 C 0.16 2.59 5.48 -5.20 -0.03 2.56 16 12 C -0.15 -2.26 5.48 -104.48 -0.57 -2.83 16 13 C -0.06 -0.84 9.86 -39.28 -0.39 -1.23 16 14 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 15 C 0.09 1.15 11.18 -17.55 -0.20 0.96 16 16 N -0.49 -7.58 10.36 -13.25 -0.14 -7.72 16 17 C 0.12 1.90 10.74 -17.55 -0.19 1.71 16 18 C 0.57 11.20 6.96 -13.04 -0.09 11.11 16 19 O -0.55 -11.62 15.96 5.17 0.08 -11.53 16 20 C -0.15 -2.85 4.21 -102.37 -0.43 -3.28 16 21 C -0.08 -1.40 8.57 -36.93 -0.32 -1.72 16 22 C -0.12 -2.02 5.80 -104.97 -0.61 -2.63 16 23 C -0.07 -1.06 9.86 -39.24 -0.39 -1.44 16 24 C -0.15 -1.91 10.03 -39.56 -0.40 -2.31 16 25 C -0.09 -1.09 10.02 -39.45 -0.40 -1.49 16 26 C -0.15 -2.10 10.01 -39.54 -0.40 -2.50 16 27 C 0.14 2.36 6.46 -38.66 -0.25 2.11 16 28 O -0.31 -5.68 10.42 -18.41 -0.19 -5.88 16 29 C 0.12 2.17 6.95 35.99 0.25 2.42 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.03 0.74 5.40 -51.93 -0.28 0.46 16 32 H 0.03 0.60 7.45 -51.93 -0.39 0.21 16 33 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 34 H 0.09 1.43 7.45 -51.93 -0.39 1.04 16 35 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.16 2.61 7.39 -52.49 -0.39 2.22 16 39 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.10 2.10 7.78 -51.93 -0.40 1.70 16 45 H 0.11 1.96 8.10 -51.93 -0.42 1.54 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -29.94 384.20 -9.67 -39.61 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.66 Total: 8.49 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -5.23 Total: -8.28 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.20 Total: -42.67 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.11 Total: -17.41 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.94 -9.67 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069351597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.396 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds