Wall clock time and date at job start Tue Mar 31 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30830 * 126.43986 * 2 1 4 4 N 1.28928 * 109.74279 * 180.13769 * 3 2 1 5 5 C 1.29724 * 109.42700 * 0.10676 * 4 3 2 6 6 N 1.34785 * 126.44342 * 180.02562 * 2 1 3 7 7 C 1.46221 * 128.60981 * 359.41946 * 6 2 1 8 8 C 1.53332 * 109.17475 * 161.67473 * 7 6 2 9 9 N 1.47069 * 109.24587 * 45.68664 * 8 7 6 10 10 C 1.34779 * 120.94379 * 116.48771 * 9 8 7 11 11 O 1.21664 * 120.00103 * 353.96686 * 10 9 8 12 12 C 1.46892 * 120.00183 * 173.97008 * 10 9 8 13 13 C 1.36127 * 125.43172 * 339.84037 * 12 10 9 14 14 C 1.41708 * 107.74655 * 180.02562 * 13 12 10 15 15 C 1.40017 * 133.35229 * 179.97438 * 14 13 12 16 16 C 1.36576 * 119.83144 * 180.02562 * 15 14 13 17 17 C 1.38855 * 120.59996 * 0.02562 * 16 15 14 18 18 C 1.37846 * 120.63224 * 359.97438 * 17 16 15 19 19 C 1.39081 * 119.81409 * 0.02562 * 18 17 16 20 20 N 1.37842 * 133.16344 * 180.34161 * 19 18 17 21 21 C 1.36892 * 125.62053 * 359.93570 * 20 19 18 22 22 H 1.07999 * 120.00471 * 217.08320 * 21 20 19 23 23 C 1.39006 * 119.99972 * 37.07463 * 21 20 19 24 24 N 1.31352 * 120.00103 * 19.06487 * 23 21 20 25 25 Si 1.86802 * 120.00093 * 199.06313 * 23 21 20 26 26 H 1.48498 * 109.47302 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47099 * 120.00354 * 25 23 21 28 28 H 1.48504 * 109.47014 * 240.00232 * 25 23 21 29 29 C 1.47520 * 118.11570 * 296.47155 * 9 8 7 30 30 H 1.09002 * 109.47267 * 269.99604 * 1 2 3 31 31 H 1.09000 * 109.47182 * 30.00147 * 1 2 3 32 32 H 1.09002 * 109.47041 * 149.99540 * 1 2 3 33 33 H 1.09005 * 109.51526 * 281.59445 * 7 6 2 34 34 H 1.09001 * 109.51575 * 41.76696 * 7 6 2 35 35 H 1.08995 * 109.51249 * 285.75427 * 8 7 6 36 36 H 1.09004 * 109.54009 * 165.63546 * 8 7 6 37 37 H 1.07998 * 126.13108 * 359.96895 * 13 12 10 38 38 H 1.08002 * 120.08296 * 0.02562 * 15 14 13 39 39 H 1.07999 * 119.69724 * 180.02562 * 16 15 14 40 40 H 1.07999 * 119.68223 * 179.97438 * 17 16 15 41 41 H 1.08003 * 120.09212 * 179.97438 * 18 17 16 42 42 H 0.96999 * 120.00372 * 184.06018 * 24 23 21 43 43 H 1.09003 * 109.95349 * 283.78346 * 29 9 8 44 44 H 1.09001 * 110.03299 * 162.55048 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0525 0.0000 4 7 3.5190 0.6821 -0.0029 5 6 3.5808 -0.6137 -0.0072 6 7 2.3076 -1.0843 -0.0005 7 6 1.9305 -2.4970 0.0105 8 6 3.1252 -3.3407 -0.4499 9 7 4.3400 -2.8762 0.2366 10 6 5.0117 -3.6850 1.0799 11 8 4.5571 -4.7763 1.3676 12 6 6.2926 -3.2491 1.6517 13 6 7.0909 -2.2701 1.1444 14 6 8.2258 -2.1589 1.9857 15 6 9.3617 -1.3405 1.9643 16 6 10.3105 -1.4696 2.9381 17 6 10.1602 -2.4069 3.9516 18 6 9.0507 -3.2238 3.9939 19 6 8.0710 -3.1108 3.0132 20 7 6.8770 -3.7636 2.7935 21 6 6.3577 -4.7603 3.5751 22 1 5.8287 -5.5840 3.1191 23 6 6.5114 -4.7122 4.9558 24 7 6.8049 -3.5754 5.5448 25 14 6.3005 -6.2643 5.9737 26 1 5.9753 -7.4033 5.0781 27 1 7.5614 -6.5530 6.7030 28 1 5.1977 -6.0704 6.9492 29 6 4.8028 -1.4999 -0.0242 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6453 -2.7899 1.0209 34 1 1.0907 -2.6549 -0.6662 35 1 3.2526 -3.2341 -1.5272 36 1 2.9473 -4.3881 -0.2062 37 1 6.8950 -1.6838 0.2588 38 1 9.4872 -0.6090 1.1797 39 1 11.1856 -0.8370 2.9197 40 1 10.9199 -2.4966 4.7139 41 1 8.9429 -3.9500 4.7860 42 1 6.9701 -3.5527 6.5003 43 1 5.2861 -1.4486 -0.9999 44 1 5.5001 -1.1869 0.7529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069453518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:01 Heat of formation + Delta-G solvation = 133.719128 kcal Electronic energy + Delta-G solvation = -31155.755410 eV Core-core repulsion = 27076.019651 eV Total energy + Delta-G solvation = -4079.735759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.144 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.30203 -40.69706 -39.11995 -36.66377 -35.82161 -34.78448 -33.69084 -32.23191 -31.16284 -30.50936 -29.04851 -28.60327 -27.79677 -26.15685 -25.08852 -24.40015 -22.64089 -21.43669 -21.10615 -20.58673 -19.84289 -18.89059 -17.82482 -17.28436 -16.89403 -16.25095 -15.91046 -15.49690 -15.38102 -14.93400 -14.90258 -14.40919 -14.29866 -14.13260 -13.58591 -13.39751 -13.29744 -12.98073 -12.89426 -12.83872 -12.67588 -12.60104 -12.37116 -12.05975 -11.89956 -11.59210 -11.38384 -11.33112 -11.22262 -10.79187 -10.56885 -10.38717 -10.31513 -10.18346 -9.85307 -9.46835 -9.20699 -9.07156 -8.78598 -8.64799 -7.26184 -6.93352 -6.62443 -4.49860 1.71842 1.76330 2.26637 2.71984 2.79539 2.87310 2.95255 3.00679 3.01129 3.08034 3.76980 3.98392 4.10607 4.18918 4.25717 4.45964 4.59479 4.65374 4.74445 4.81073 5.03693 5.11576 5.18987 5.27402 5.36048 5.44254 5.49518 5.52485 5.74180 5.81175 5.86876 5.93100 6.04569 6.11642 6.24714 6.33372 6.48982 6.64122 6.75603 6.80909 6.95819 7.03216 7.10799 7.34252 7.43759 7.55058 7.62554 7.88507 8.03596 8.33185 8.48899 8.73270 8.78159 9.22692 10.11670 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.003863 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.130015 B = 7247.447102 C = 8676.865211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.172 3.828 3 N -0.299 5.299 4 N -0.282 5.282 5 C 0.170 3.830 6 N -0.467 5.467 7 C 0.089 3.911 8 C 0.105 3.895 9 N -0.622 5.622 10 C 0.603 3.397 11 O -0.527 6.527 12 C -0.030 4.030 13 C -0.222 4.222 14 C -0.118 4.118 15 C -0.092 4.092 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.049 4.049 19 C 0.083 3.917 20 N -0.224 5.224 21 C -0.340 4.340 22 H 0.123 0.877 23 C 0.051 3.949 24 N -0.814 5.814 25 Si 0.928 3.072 26 H -0.259 1.259 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.181 3.819 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.282 0.718 43 H 0.101 0.899 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 1.087 -9.387 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.096 4.096 3 N -0.140 5.140 4 N -0.121 5.121 5 C -0.099 4.099 6 N -0.159 5.159 7 C -0.035 4.035 8 C -0.019 4.019 9 N -0.358 5.358 10 C 0.395 3.605 11 O -0.403 6.403 12 C -0.148 4.148 13 C -0.249 4.249 14 C -0.122 4.122 15 C -0.111 4.111 16 C -0.172 4.172 17 C -0.173 4.173 18 C -0.068 4.068 19 C -0.032 4.032 20 N 0.116 4.884 21 C -0.468 4.468 22 H 0.140 0.860 23 C -0.162 4.162 24 N -0.443 5.443 25 Si 0.752 3.248 26 H -0.183 1.183 27 H -0.195 1.195 28 H -0.200 1.200 29 C 0.056 3.944 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.513 1.708 -8.773 11.676 hybrid contribution -0.681 -1.776 0.735 2.040 sum -8.194 -0.069 -8.037 11.478 Atomic orbital electron populations 1.20176 0.83817 1.04263 1.04004 1.24692 0.97038 0.82973 1.04853 1.74473 0.96131 1.23631 1.19725 1.74038 1.12078 1.07546 1.18447 1.25104 0.87203 0.92865 1.04705 1.45924 1.06902 1.08422 1.54661 1.22460 0.99626 0.76835 1.04624 1.21780 0.82725 1.00462 0.96920 1.47796 1.27493 1.13469 1.47062 1.17225 0.83069 0.83439 0.76732 1.90751 1.68990 1.21627 1.58909 1.19361 0.96022 1.01669 0.97751 1.20650 0.97572 1.02977 1.03728 1.17930 0.96691 1.00207 0.97416 1.20048 0.93341 0.98912 0.98766 1.20297 0.99352 1.00680 0.96830 1.20561 0.98313 0.98709 0.99765 1.20127 0.91494 0.99136 0.96047 1.18134 0.87986 0.98705 0.98365 1.39942 1.10542 1.22613 1.15269 1.20229 1.37314 1.01209 0.88075 0.85970 1.25698 0.95016 0.98278 0.97256 1.70046 1.37269 1.24499 1.12458 0.85843 0.78710 0.80925 0.79368 1.18263 1.19545 1.19960 1.21167 0.90101 0.77473 1.05631 0.89665 0.88739 0.90591 0.88682 0.87757 0.90028 0.86175 0.84436 0.87627 0.87868 0.87667 0.86893 0.90703 0.88106 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.28 36.00 0.37 -0.13 16 2 C 0.17 2.26 8.06 -155.38 -1.25 1.01 16 3 N -0.30 -5.03 12.23 32.71 0.40 -4.63 16 4 N -0.28 -5.02 12.21 32.79 0.40 -4.62 16 5 C 0.17 2.65 7.88 -155.30 -1.22 1.42 16 6 N -0.47 -6.16 3.11 -110.82 -0.34 -6.51 16 7 C 0.09 0.87 6.92 -4.02 -0.03 0.85 16 8 C 0.10 1.17 6.41 -3.56 -0.02 1.15 16 9 N -0.62 -9.59 2.97 -174.87 -0.52 -10.11 16 10 C 0.60 12.24 7.57 -12.76 -0.10 12.14 16 11 O -0.53 -11.91 14.55 5.22 0.08 -11.83 16 12 C -0.03 -0.69 6.45 -82.25 -0.53 -1.22 16 13 C -0.22 -4.53 8.48 -39.02 -0.33 -4.86 16 14 C -0.12 -2.64 6.16 -106.89 -0.66 -3.30 16 15 C -0.09 -1.80 10.06 -39.52 -0.40 -2.20 16 16 C -0.15 -2.88 9.97 -39.95 -0.40 -3.27 16 17 C -0.15 -3.09 10.02 -39.50 -0.40 -3.48 16 18 C -0.05 -1.13 8.53 -39.41 -0.34 -1.47 16 19 C 0.08 2.05 6.09 -83.83 -0.51 1.54 16 20 N -0.22 -5.75 2.84 -56.08 -0.16 -5.91 16 21 C -0.34 -8.90 9.09 -15.01 -0.14 -9.04 16 22 H 0.12 3.26 6.67 -52.49 -0.35 2.91 16 23 C 0.05 1.26 4.39 -17.47 -0.08 1.19 16 24 N -0.81 -20.98 10.84 55.50 0.60 -20.38 16 25 Si 0.93 19.04 29.60 -169.99 -5.03 14.00 16 26 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 29 C 0.18 2.63 5.12 -4.50 -0.02 2.61 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.40 7.68 -51.93 -0.40 0.00 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.62 7.76 -51.93 -0.40 0.22 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.12 1.37 7.04 -51.93 -0.37 1.00 16 37 H 0.14 2.26 5.40 -52.49 -0.28 1.98 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.11 2.71 6.36 -52.48 -0.33 2.38 16 42 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 43 H 0.10 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.15 2.50 4.56 -51.93 -0.24 2.26 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -33.47 359.58 -10.08 -43.55 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.88 Total: 8.08 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -6.05 Total: -7.06 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.38 Total: -52.16 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.47 -10.08 -43.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069453518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.270 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds