Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37711 * 119.65353 * 2 1 4 4 C 1.39864 * 120.00199 * 180.02562 * 3 2 1 5 5 C 1.46028 * 133.87759 * 179.97438 * 4 3 2 6 6 N 1.30236 * 107.68067 * 180.02562 * 5 4 3 7 7 N 1.39856 * 110.04890 * 359.97438 * 6 5 4 8 8 H 0.96998 * 125.41159 * 180.02562 * 7 6 5 9 9 C 1.36525 * 109.16960 * 0.02562 * 7 6 5 10 10 C 1.40608 * 133.75911 * 179.97438 * 9 7 6 11 11 C 1.47499 * 120.22420 * 0.02562 * 10 9 7 12 12 O 1.21593 * 120.00352 * 306.10295 * 11 10 9 13 13 N 1.34783 * 119.99527 * 126.10172 * 11 10 9 14 14 C 1.46491 * 120.00239 * 4.73693 * 13 11 10 15 15 C 1.50703 * 109.46865 * 95.82341 * 14 13 11 16 16 H 1.07999 * 120.00369 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99904 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99840 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00111 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47068 * 89.99885 * 19 17 15 21 21 H 1.48499 * 109.46880 * 209.99807 * 19 17 15 22 22 H 1.48494 * 109.47057 * 329.99753 * 19 17 15 23 23 C 1.46504 * 119.99516 * 184.74274 * 13 11 10 24 24 C 1.50703 * 109.47199 * 90.00102 * 23 13 11 25 25 C 1.38671 * 120.41419 * 269.71377 * 24 23 13 26 26 C 1.38626 * 118.41866 * 179.78288 * 25 24 23 27 27 C 1.38231 * 119.15966 * 0.51989 * 26 25 24 28 28 N 1.31858 * 120.76247 * 359.71953 * 27 26 25 29 29 C 1.31886 * 121.72554 * 0.02562 * 28 27 26 30 30 C 1.38473 * 119.65562 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47363 * 269.97760 * 1 2 3 32 32 H 1.09005 * 109.46838 * 29.97966 * 1 2 3 33 33 H 1.09002 * 109.47007 * 149.97416 * 1 2 3 34 34 H 1.08003 * 119.99584 * 0.03931 * 3 2 1 35 35 H 1.08001 * 126.15914 * 0.02562 * 5 4 3 36 36 H 1.09004 * 109.47482 * 215.82066 * 14 13 11 37 37 H 1.09003 * 109.47645 * 335.82463 * 14 13 11 38 38 H 0.96998 * 119.99869 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.46541 * 209.99998 * 23 13 11 40 40 H 1.09003 * 109.47121 * 329.99542 * 23 13 11 41 41 H 1.07998 * 120.79179 * 0.03160 * 25 24 23 42 42 H 1.08005 * 120.42392 * 180.22639 * 26 25 24 43 43 H 1.08005 * 119.61707 * 179.74715 * 27 26 25 44 44 H 1.08001 * 119.61538 * 179.97438 * 29 28 27 45 45 H 1.08001 * 119.74823 * 359.69514 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.1968 0.0000 4 6 3.5869 1.2053 -0.0005 5 6 4.5927 2.2640 -0.0012 6 7 5.7647 1.6962 -0.0020 7 7 5.6234 0.3048 -0.0015 8 1 6.3531 -0.3343 -0.0016 9 6 4.2951 -0.0109 -0.0007 10 6 3.5838 -1.2238 -0.0004 11 6 4.3076 -2.5090 -0.0004 12 8 5.1465 -2.7345 -0.8512 13 7 4.0391 -3.4335 0.9430 14 6 2.9577 -3.2061 1.9047 15 6 1.7029 -3.8851 1.4194 16 1 1.7104 -4.4317 0.4879 17 6 0.5456 -3.8093 2.1650 18 7 -0.5493 -4.4023 1.7417 19 14 0.5328 -2.8644 3.7764 20 1 0.1639 -1.4495 3.5176 21 1 -0.4582 -3.4735 4.6994 22 1 1.8826 -2.9192 4.3930 23 6 4.8289 -4.6658 1.0066 24 6 6.0167 -4.4551 1.9099 25 6 7.2189 -3.9961 1.3933 26 6 8.2833 -3.8127 2.2624 27 6 8.1152 -4.1017 3.6036 28 7 6.9585 -4.5414 4.0590 29 6 5.9232 -4.7228 3.2623 30 6 2.1921 -1.2034 -0.0005 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6426 2.1288 0.0006 35 1 4.3993 3.3266 -0.0009 36 1 3.2412 -3.6163 2.8740 37 1 2.7771 -2.1355 2.0020 38 1 -1.3636 -4.3487 2.2660 39 1 4.2115 -5.4730 1.4005 40 1 5.1748 -4.9277 0.0066 41 1 7.3224 -3.7828 0.3397 42 1 9.2333 -3.4531 1.8954 43 1 8.9408 -3.9654 4.2865 44 1 4.9917 -5.0849 3.6717 45 1 1.6424 -2.1330 0.0040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069534957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = 87.942407 kcal Electronic energy + Delta-G solvation = -31157.174095 eV Core-core repulsion = 27140.879220 eV Total energy + Delta-G solvation = -4016.294875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.148 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.20532 -40.18444 -39.06608 -37.10012 -35.48410 -33.26967 -32.53674 -32.19238 -31.46409 -30.98395 -29.72996 -28.25866 -26.42225 -26.04883 -23.60444 -23.49657 -22.55672 -22.27660 -21.51270 -20.84610 -18.99961 -17.53381 -17.15032 -16.99880 -16.75860 -16.12017 -15.93208 -15.62367 -15.26461 -14.86840 -14.58354 -14.38150 -14.24419 -13.86695 -13.62898 -13.41131 -13.17701 -13.12912 -13.03821 -12.86454 -12.57691 -12.16744 -11.92702 -11.81790 -11.54876 -11.37676 -11.28630 -11.14120 -10.98096 -10.76269 -10.69709 -10.41440 -10.09352 -9.82555 -9.72755 -9.43670 -9.37908 -8.90293 -8.84315 -8.32415 -8.02058 -7.65006 -6.35025 -4.37698 0.98275 1.15213 1.36845 1.72240 2.51963 2.84015 3.10549 3.14275 3.19524 3.23416 3.54863 3.97991 4.05875 4.16913 4.52867 4.68107 4.71310 4.87337 4.94220 4.96452 5.00612 5.10783 5.15971 5.20995 5.34129 5.48540 5.51398 5.66589 5.73870 5.83036 5.91768 5.99685 6.04125 6.06483 6.19921 6.23967 6.27346 6.39882 6.44661 6.50054 6.58163 6.67039 6.78561 6.88407 7.09476 7.12591 7.30197 7.42007 7.68376 7.88175 8.04476 8.24087 8.59680 8.70752 9.23801 10.76019 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.007415 B = 0.005871 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3775.013056 B = 4768.180008 C = 7332.295450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.129 4.129 3 C -0.030 4.030 4 C -0.193 4.193 5 C 0.075 3.925 6 N -0.258 5.258 7 N -0.503 5.503 8 H 0.440 0.560 9 C 0.165 3.835 10 C -0.151 4.151 11 C 0.567 3.433 12 O -0.565 6.565 13 N -0.576 5.576 14 C 0.202 3.798 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.087 3.913 18 N -0.881 5.881 19 Si 0.859 3.141 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.264 1.264 23 C 0.159 3.841 24 C -0.146 4.146 25 C -0.059 4.059 26 C -0.180 4.180 27 C 0.091 3.909 28 N -0.488 5.488 29 C 0.114 3.886 30 C -0.013 4.013 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.195 0.805 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.269 0.731 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.151 0.849 44 H 0.158 0.842 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.258 7.653 -0.593 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C -0.051 4.051 4 C -0.201 4.201 5 C -0.123 4.123 6 N -0.072 5.072 7 N -0.217 5.217 8 H 0.284 0.716 9 C 0.047 3.953 10 C -0.158 4.158 11 C 0.355 3.645 12 O -0.446 6.446 13 N -0.304 5.304 14 C 0.081 3.919 15 C -0.584 4.584 16 H 0.101 0.899 17 C -0.118 4.118 18 N -0.518 5.518 19 Si 0.685 3.315 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.188 1.188 23 C 0.036 3.964 24 C -0.150 4.150 25 C -0.086 4.086 26 C -0.200 4.200 27 C -0.066 4.066 28 N -0.197 5.197 29 C -0.044 4.044 30 C -0.034 4.034 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.212 0.788 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.168 0.832 44 H 0.175 0.825 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.670 7.488 -0.070 12.231 hybrid contribution -0.531 0.200 0.141 0.585 sum 9.139 7.688 0.071 11.943 Atomic orbital electron populations 1.20698 0.90418 1.02616 1.02524 1.19674 0.96639 0.92205 1.04581 1.20539 0.90928 0.97904 0.95724 1.19732 0.94414 0.91451 1.14466 1.25019 0.88216 0.99421 0.99600 1.76497 1.23476 0.88381 1.18804 1.45797 1.05153 1.04246 1.66547 0.71605 1.18475 0.84957 0.94229 0.97616 1.18738 0.93720 0.90125 1.13239 1.18153 0.81776 0.83699 0.80835 1.90690 1.36125 1.79908 1.37869 1.47864 1.33266 1.17576 1.31677 1.20010 0.85677 0.97906 0.88305 1.21279 0.92565 1.34937 1.09645 0.89900 1.24779 0.95262 0.94659 0.97133 1.69874 1.01059 1.42203 1.38630 0.87087 0.78888 0.81058 0.84425 1.19342 1.20726 1.18845 1.20199 0.89323 0.87862 0.99065 1.21438 0.96594 1.00527 0.96395 1.21666 0.92026 0.94154 1.00750 1.22124 1.00027 1.02765 0.95062 1.22724 0.95122 0.94984 0.93770 1.67713 1.00050 1.12491 1.39425 1.22819 0.97014 0.94912 0.89622 1.22082 0.91696 1.00605 0.89006 0.91346 0.92132 0.90804 0.85492 0.78789 0.95007 0.94439 0.92125 0.88327 0.89224 0.84494 0.85132 0.83178 0.82500 0.80996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.99 36.00 0.36 -1.13 16 2 C -0.13 -2.07 5.87 -104.73 -0.61 -2.68 16 3 C -0.03 -0.43 9.72 -39.17 -0.38 -0.81 16 4 C -0.19 -2.97 6.36 -105.22 -0.67 -3.63 16 5 C 0.08 0.99 12.29 -15.11 -0.19 0.80 16 6 N -0.26 -3.91 12.55 31.89 0.40 -3.51 16 7 N -0.50 -8.23 7.34 32.51 0.24 -7.99 16 8 H 0.44 6.79 8.96 -182.78 -1.64 5.15 16 9 C 0.16 2.90 7.04 -83.94 -0.59 2.31 16 10 C -0.15 -2.86 4.74 -104.88 -0.50 -3.36 16 11 C 0.57 11.15 7.17 -12.48 -0.09 11.06 16 12 O -0.56 -11.64 16.52 5.28 0.09 -11.55 16 13 N -0.58 -11.01 2.44 -177.67 -0.43 -11.44 16 14 C 0.20 4.20 3.74 -5.20 -0.02 4.18 16 15 C -0.55 -12.92 7.58 -34.44 -0.26 -13.18 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 17 C 0.09 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.88 -23.38 13.96 55.43 0.77 -22.60 16 19 Si 0.86 18.78 27.47 -169.99 -4.67 14.11 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 23 C 0.16 2.66 5.61 -5.19 -0.03 2.63 16 24 C -0.15 -2.26 5.48 -104.48 -0.57 -2.84 16 25 C -0.06 -0.84 9.86 -39.28 -0.39 -1.23 16 26 C -0.18 -2.21 10.11 -39.44 -0.40 -2.61 16 27 C 0.09 1.18 11.18 -17.54 -0.20 0.99 16 28 N -0.49 -7.59 10.36 -13.25 -0.14 -7.73 16 29 C 0.11 1.78 10.86 -17.55 -0.19 1.59 16 30 C -0.01 -0.25 7.29 -39.14 -0.29 -0.54 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 35 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.03 0.67 7.17 -51.93 -0.37 0.29 16 37 H 0.04 0.80 5.08 -51.93 -0.26 0.54 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.10 1.60 8.02 -51.93 -0.42 1.19 16 40 H 0.09 1.48 7.31 -51.93 -0.38 1.10 16 41 H 0.14 1.92 7.94 -52.49 -0.42 1.50 16 42 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 45 H 0.17 3.57 5.36 -52.49 -0.28 3.29 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -29.30 382.58 -9.82 -39.12 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.73 Total: 12.23 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -5.11 Total: -6.40 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.84 Total: -53.28 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.67 Total: 14.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.30 -9.82 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069534957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.062 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds