Wall clock time and date at job start Tue Mar 31 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39810 * 120.07501 * 8.26678 * 3 2 1 5 5 C 1.37650 * 119.92275 * 180.02562 * 4 3 2 6 6 C 1.39175 * 120.07900 * 359.97438 * 5 4 3 7 7 N 1.39182 * 119.92717 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99928 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46973 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99970 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00222 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99626 * 359.97438 * 11 9 8 13 13 C 1.50699 * 109.47198 * 269.99560 * 12 11 9 14 14 H 1.08001 * 119.99641 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99899 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99986 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47386 * 89.99631 * 17 15 13 19 19 H 1.48503 * 109.47250 * 210.00079 * 17 15 13 20 20 H 1.48500 * 109.46830 * 330.00085 * 17 15 13 21 21 C 1.46503 * 120.00342 * 179.97438 * 11 9 8 22 22 C 1.50695 * 109.47313 * 270.00350 * 21 11 9 23 23 C 1.38678 * 120.41675 * 270.25293 * 22 21 11 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 C 1.39184 * 120.14876 * 0.28237 * 6 5 4 29 29 C 1.37657 * 120.07311 * 359.44690 * 28 6 5 30 30 H 1.07995 * 120.03826 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.95735 * 179.97438 * 5 4 3 32 32 H 0.96997 * 120.00044 * 0.02562 * 7 6 5 33 33 H 1.08999 * 109.47510 * 60.00000 * 8 7 6 34 34 H 1.09002 * 109.46884 * 299.99425 * 8 7 6 35 35 H 1.09000 * 109.46928 * 30.00295 * 12 11 9 36 36 H 1.09006 * 109.46774 * 149.99687 * 12 11 9 37 37 H 0.96998 * 119.99672 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46632 * 150.00159 * 21 11 9 39 39 H 1.08996 * 109.46728 * 30.00153 * 21 11 9 40 40 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 41 41 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 42 42 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 44 44 H 1.07998 * 119.96207 * 179.70417 * 28 6 5 45 45 H 1.08001 * 120.03839 * 180.27752 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -1.1964 -0.1740 5 6 4.6457 -1.1922 -0.1729 6 6 5.3395 0.0018 0.0005 7 7 6.7313 0.0024 0.0005 8 6 7.4632 1.2582 0.1835 9 6 8.9450 0.9863 0.1444 10 8 9.3497 -0.1452 -0.0196 11 7 9.8204 2.0004 0.2918 12 6 9.3314 3.3672 0.4894 13 6 9.1647 4.0395 -0.8490 14 1 9.3991 3.5022 -1.7561 15 6 8.7119 5.3401 -0.9155 16 7 8.4260 5.9942 0.1891 17 14 8.5045 6.1732 -2.5745 18 1 7.1300 5.9311 -3.0817 19 1 8.7273 7.6339 -2.4263 20 1 9.4915 5.6168 -3.5346 21 6 11.2609 1.7360 0.2543 22 6 11.7540 1.4417 1.6476 23 6 12.1968 2.4689 2.4672 24 6 12.6463 2.1507 3.7394 25 6 12.6334 0.8301 4.1476 26 7 12.2000 -0.1204 3.3430 27 6 11.7653 0.1456 2.1265 28 6 4.6446 1.1944 0.1793 29 6 3.2681 1.1983 0.1737 30 1 2.7315 -2.1233 -0.3082 31 1 5.1879 -2.1166 -0.3068 32 1 7.2167 -0.8286 -0.1206 33 1 7.1998 1.6954 1.1466 34 1 7.1996 1.9520 -0.6148 35 1 8.3709 3.3387 1.0039 36 1 10.0488 3.9265 1.0900 37 1 8.1071 6.9090 0.1422 38 1 11.7806 2.6102 -0.1380 39 1 11.4561 0.8781 -0.3890 40 1 12.1957 3.4919 2.1211 41 1 13.0025 2.9247 4.4031 42 1 12.9816 0.5739 5.1373 43 1 11.4182 -0.6596 1.4959 44 1 5.1861 2.1185 0.3184 45 1 2.7295 2.1247 0.3080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069618201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:08 Heat of formation + Delta-G solvation = 56.681925 kcal Electronic energy + Delta-G solvation = -29149.803459 eV Core-core repulsion = 25132.153027 eV Total energy + Delta-G solvation = -4017.650432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.148 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.27692 -39.73708 -39.03124 -36.67300 -35.65239 -34.91985 -33.20516 -32.27885 -31.57655 -31.13290 -30.13330 -27.84728 -27.33402 -25.45155 -23.56045 -23.07309 -22.99010 -22.51396 -21.66879 -18.97625 -18.72049 -17.65300 -17.11973 -16.71456 -16.37744 -16.29069 -15.61968 -15.39984 -15.31954 -14.83684 -14.61760 -14.42996 -14.09863 -13.94442 -13.62820 -13.53415 -13.47927 -13.39315 -12.92662 -12.89664 -12.70258 -12.57672 -12.48975 -12.02060 -12.00407 -11.97368 -11.58072 -11.47404 -11.08791 -10.98010 -10.91973 -10.38529 -10.06531 -10.03025 -9.72847 -9.52895 -9.33968 -9.07275 -8.88940 -8.73708 -8.08966 -7.44052 -6.38033 -4.47402 1.02432 1.19073 1.39851 1.41376 2.76701 2.96522 3.06899 3.11420 3.17235 3.20350 3.23522 3.73869 3.98334 4.06021 4.09571 4.18332 4.56501 4.81897 4.87525 4.88415 4.95884 4.99557 5.04409 5.15335 5.19423 5.28104 5.45005 5.51202 5.56003 5.62297 5.78204 5.80017 5.92571 5.94516 6.01429 6.13507 6.23296 6.25905 6.39455 6.41395 6.46689 6.65445 6.83334 6.88802 7.14257 7.24718 7.55372 7.60296 7.72456 7.80465 7.97043 8.08494 8.48523 8.65427 9.22524 10.68420 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.007342 B = 0.003234 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3812.944313 B = 8657.228407 C =11488.510468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.270 3.730 3 C -0.114 4.114 4 C -0.018 4.018 5 C -0.204 4.204 6 C 0.259 3.741 7 N -0.720 5.720 8 C 0.102 3.898 9 C 0.515 3.485 10 O -0.569 6.569 11 N -0.584 5.584 12 C 0.235 3.765 13 C -0.547 4.547 14 H 0.063 0.937 15 C 0.070 3.930 16 N -0.887 5.887 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.161 3.839 22 C -0.148 4.148 23 C -0.058 4.058 24 C -0.178 4.178 25 C 0.090 3.910 26 N -0.492 5.492 27 C 0.117 3.883 28 C -0.203 4.203 29 C -0.014 4.014 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.411 0.589 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.138 0.862 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -7.662 3.388 8.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.044 4.044 3 C -0.120 4.120 4 C -0.040 4.040 5 C -0.227 4.227 6 C 0.149 3.851 7 N -0.347 5.347 8 C -0.025 4.025 9 C 0.303 3.697 10 O -0.450 6.450 11 N -0.313 5.313 12 C 0.116 3.884 13 C -0.585 4.585 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.038 3.962 22 C -0.151 4.151 23 C -0.084 4.084 24 C -0.198 4.198 25 C -0.067 4.067 26 N -0.200 5.200 27 C -0.041 4.041 28 C -0.226 4.226 29 C -0.035 4.035 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.250 0.750 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.168 0.832 43 H 0.175 0.825 44 H 0.155 0.845 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.148 -8.695 3.696 9.517 hybrid contribution 0.539 1.518 -1.104 1.953 sum 1.686 -7.178 2.591 7.815 Atomic orbital electron populations 1.81215 1.12322 1.07914 1.11221 1.25793 0.92690 0.93247 0.92636 1.15753 0.83979 0.95363 1.16885 1.20767 0.93277 0.96240 0.93685 1.20456 0.93737 0.96871 1.11623 1.18058 0.83460 0.93904 0.89654 1.44618 1.02478 1.10483 1.77146 1.21252 0.89652 0.87114 1.04437 1.20263 0.88483 0.84703 0.76296 1.90586 1.79991 1.22176 1.52253 1.48190 1.04496 1.09902 1.68727 1.19542 0.95822 0.75509 0.97544 1.21440 1.46332 0.98190 0.92574 0.91855 1.24916 0.94623 0.96970 0.96908 1.69906 1.43657 1.11906 1.26954 0.86524 0.78875 0.78702 0.83619 1.20260 1.21001 1.19735 1.20161 0.81677 1.02915 0.91482 1.21402 1.00267 0.94597 0.98880 1.21646 0.93806 0.99822 0.93161 1.22119 1.02349 0.98080 0.97244 1.22726 0.95898 0.89137 0.98934 1.67721 1.10469 1.37133 1.04701 1.22840 0.93765 0.95691 0.91757 1.20736 0.93891 0.97562 1.10425 1.20880 0.93472 0.96322 0.92873 0.85471 0.85268 0.75024 0.88977 0.87199 0.94311 0.94302 0.92268 0.88894 0.89505 0.84462 0.85008 0.83234 0.82461 0.84461 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.68 18.54 41.84 0.78 -5.90 16 2 C 0.27 3.44 15.33 -22.47 -0.34 3.09 16 3 C -0.11 -1.27 5.74 -106.80 -0.61 -1.88 16 4 C -0.02 -0.18 9.75 -39.21 -0.38 -0.56 16 5 C -0.20 -2.11 9.87 -39.45 -0.39 -2.50 16 6 C 0.26 3.12 6.65 -83.82 -0.56 2.56 16 7 N -0.72 -9.43 5.68 -59.79 -0.34 -9.77 16 8 C 0.10 1.52 3.93 -5.19 -0.02 1.50 16 9 C 0.51 8.70 7.74 -10.99 -0.09 8.61 16 10 O -0.57 -10.12 14.81 5.55 0.08 -10.03 16 11 N -0.58 -10.11 2.44 -176.43 -0.43 -10.54 16 12 C 0.24 4.69 4.97 -5.19 -0.03 4.66 16 13 C -0.55 -12.31 9.28 -34.44 -0.32 -12.63 16 14 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 15 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -21.94 13.29 55.43 0.74 -21.21 16 17 Si 0.90 18.74 29.54 -169.99 -5.02 13.72 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C 0.16 2.49 5.56 -5.19 -0.03 2.46 16 22 C -0.15 -2.17 5.48 -104.48 -0.57 -2.75 16 23 C -0.06 -0.78 9.86 -39.28 -0.39 -1.17 16 24 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 25 C 0.09 1.13 11.18 -17.54 -0.20 0.93 16 26 N -0.49 -7.38 10.36 -13.25 -0.14 -7.52 16 27 C 0.12 1.77 10.86 -17.55 -0.19 1.57 16 28 C -0.20 -2.45 9.28 -39.44 -0.37 -2.81 16 29 C -0.01 -0.16 9.75 -39.21 -0.38 -0.54 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.41 5.37 7.44 -40.82 -0.30 5.07 16 33 H 0.09 1.34 7.19 -51.93 -0.37 0.96 16 34 H 0.11 1.75 7.80 -51.93 -0.41 1.34 16 35 H 0.04 0.80 6.44 -51.93 -0.33 0.46 16 36 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 38 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 39 H 0.09 1.31 7.37 -51.93 -0.38 0.93 16 40 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 42 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.16 2.40 7.62 -52.49 -0.40 2.00 16 44 H 0.14 1.69 6.70 -52.49 -0.35 1.34 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -27.00 397.89 -9.16 -36.16 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.47 Total: 9.49 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -5.36 Total: -0.41 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.60 Total: -54.93 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -27.00 -9.16 -36.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069618201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.844 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds